Report for Sequence Feature Glyma10g39451
Feature Type: gene_model
Chromosome: Gm10
Start: 47118922
stop: 47120992
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g39451
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT2G32150 AT
Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:13659095-13660531 FORWARD LENGTH=263
SoyBase E_val: 1.00E-98 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG3109
KOG
Haloacid dehalogenase-like hydrolase
JGI ISS
PTHR12725 Panther
HALOACID DEHALOGENASE-LIKE HYDROLASE
JGI ISS
PTHR12725:SF15 Panther
PREDICTED PROTEIN (FRAGMENT)
JGI ISS
UniRef100_B7FKK9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Phosphate metabolism protein n=1 Tax=Medicago truncatula RepID=B7FKK9_MEDTR
SoyBase E_val: 2.00E-117 ISS
UniRef100_Q8LJU2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative hydrolase n=1 Tax=Glycine max RepID=Q8LJU2_SOYBN
SoyBase E_val: 1.00E-151 ISS
Expression Patterns of Glyma10g39451
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma10g39451
Paralog Evidence Comments
Glyma20g28320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g39451 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g248900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g39451
Coding sequences of Glyma10g39451
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g39451.1 sequence type=CDS gene model=Glyma10g39451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGAATTGTCCAACAATTAATTCAAAACACACCGGAATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCAAAGCCTTGACCCAACGAGTTGAGCTCTTCAAAACCTACGGAAGCACCCTTGCCGGCTTAAGAGCACAAGGCCTCGATATCACTGCAGAGGACTACCACGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCGACACTGATCATCAGTTACGGAACCTCCTCTTGAGCATCAAACAAAGAAAAATTGTTTTTACTAATTCTGACAGGATTCACGCGATGAGGGCGCTGGATAGGCTTGGGGTCAAGGACTGTTTCGAGCAAATCATATGCTTCGAGACTATAAACCCGAACCTTCCCTATTCAACCCGACCCGACGAATTCCCCATCCTCCTTAAACCTTCGCTCGACGCCTTCAAGATCGCGCTTGACGCTGCCAACGTGGATCCTCGTCGTACGATTTTATGCTATATATTGCAGTTGTTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTTGGGAAGACAATGAAAAGCAAAGGAGCTGACTATGCTGTGGAGAGTGTGCATAACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGGTGATCCAACGATGACACGTTCGAAGAGTGAATTGGAGGCCGTACTCGCTTGTGCTCTGGTTGGAGCTTGA
Predicted protein sequences of Glyma10g39451
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g39451.1 sequence type=predicted peptide gene model=Glyma10g39451 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MNCPTINSKHTGIDKCVKKNIQLFLIQKCGFSESKALTQRVELFKTYGSTLAGLRAQGLDITAEDYHGFVHGRLPYDSIDTDHQLRNLLLSIKQRKIVFTNSDRIHAMRALDRLGVKDCFEQIICFETINPNLPYSTRPDEFPILLKPSLDAFKIALDAANVDPRRTILCYILQLFLDDSVRNIAAGKEMGLHTVLVGKTMKSKGADYAVESVHNLAQVIPEIWANEMDGGDPTMTRSKSELEAVLACALVGA*