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Report for Sequence Feature Glyma10g39451

Feature Type:gene_model
Chromosome:Gm10
Start:47118922
stop:47120992
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G32150AT Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr2:13659095-13660531 FORWARD LENGTH=263 SoyBaseE_val: 1.00E-98ISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0016787GO-mf Annotation by Michelle Graham. GO Molecular Function: hydrolase activity SoyBaseN/AISS
KOG3109 KOG Haloacid dehalogenase-like hydrolase JGI ISS
PTHR12725Panther HALOACID DEHALOGENASE-LIKE HYDROLASE JGI ISS
PTHR12725:SF15Panther PREDICTED PROTEIN (FRAGMENT) JGI ISS
UniRef100_B7FKK9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phosphate metabolism protein n=1 Tax=Medicago truncatula RepID=B7FKK9_MEDTR SoyBaseE_val: 2.00E-117ISS
UniRef100_Q8LJU2UniRef Annotation by Michelle Graham. Best UniRef hit: Putative hydrolase n=1 Tax=Glycine max RepID=Q8LJU2_SOYBN SoyBaseE_val: 1.00E-151ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g39451 not represented in the dataset

Glyma10g39451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g28320 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g248900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g39451.1   sequence type=CDS   gene model=Glyma10g39451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTGTCCAACAATTAATTCAAAACACACCGGAATTGACAAGTGCGTCAAGAAAAACATCCAACTCTTTCTCATCCAGAAATGCGGATTCTCAGAATCCAAAGCCTTGACCCAACGAGTTGAGCTCTTCAAAACCTACGGAAGCACCCTTGCCGGCTTAAGAGCACAAGGCCTCGATATCACTGCAGAGGACTACCACGGTTTCGTGCACGGAAGGCTACCTTACGACTCCATCGACACTGATCATCAGTTACGGAACCTCCTCTTGAGCATCAAACAAAGAAAAATTGTTTTTACTAATTCTGACAGGATTCACGCGATGAGGGCGCTGGATAGGCTTGGGGTCAAGGACTGTTTCGAGCAAATCATATGCTTCGAGACTATAAACCCGAACCTTCCCTATTCAACCCGACCCGACGAATTCCCCATCCTCCTTAAACCTTCGCTCGACGCCTTCAAGATCGCGCTTGACGCTGCCAACGTGGATCCTCGTCGTACGATTTTATGCTATATATTGCAGTTGTTTCTGGATGACAGCGTTCGCAATATTGCCGCGGGAAAAGAAATGGGTCTCCACACTGTTCTGGTTGGGAAGACAATGAAAAGCAAAGGAGCTGACTATGCTGTGGAGAGTGTGCATAACTTGGCACAAGTGATCCCAGAGATATGGGCAAACGAAATGGACGGTGGTGATCCAACGATGACACGTTCGAAGAGTGAATTGGAGGCCGTACTCGCTTGTGCTCTGGTTGGAGCTTGA

>Glyma10g39451.1   sequence type=predicted peptide   gene model=Glyma10g39451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNCPTINSKHTGIDKCVKKNIQLFLIQKCGFSESKALTQRVELFKTYGSTLAGLRAQGLDITAEDYHGFVHGRLPYDSIDTDHQLRNLLLSIKQRKIVFTNSDRIHAMRALDRLGVKDCFEQIICFETINPNLPYSTRPDEFPILLKPSLDAFKIALDAANVDPRRTILCYILQLFLDDSVRNIAAGKEMGLHTVLVGKTMKSKGADYAVESVHNLAQVIPEIWANEMDGGDPTMTRSKSELEAVLACALVGA*







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