Glyma10g39390 - SoyBase

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Report for Sequence Feature Glyma10g39390

Feature Type:	gene_model
Chromosome:	Gm10
Start:	47063521
stop:	47067407
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g39390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G04910	AT	Annotation by Michelle Graham. TAIR10: with no lysine (K) kinase 1 \| chr3:1355084-1358057 FORWARD LENGTH=700	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0004713	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG0584	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR13902	Panther	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED	JGI		ISS
PTHR13902:SF38	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_C0M0P3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C0M0P3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7I7D3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: With no lysine kinase n=1 Tax=Medicago truncatula RepID=G7I7D3_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g39390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g39390

Paralog	Evidence	Comments
Glyma20g28411	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g39390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g248400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g39390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g39390

Limit To All Plant Sequences

>Glyma10g39390.2   sequence type=CDS   gene model=Glyma10g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGGTGCTGCATTTGTTGTGGCAGAGTGCTGTGAGTATGTGGAAGTCGATCCCACGGGAAGATATGGAAGATATAGTGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTCTATAGAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGTTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATTCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTATACTTCCTGGGTTGATACTACCAACAGACACATTAACTTTGTCACTGAGATGTTTACCTCTGGGACTCTAAGACAGTACAGACTTAAACACAAACGGGTGAACATCAGAGCTGTTAAGCATTGGTGCAGGCAGATTTTGGAAGGGCTTCTGTATCTGCACAGCCATGATCCTCCTGTGATCCATAGAGATCTCAAGTGTGACAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATTGGTGATCTTGGCCTTGCTGCAATTCTCCGCAAATCTAATGCTGCTCGCTGTGTTGGCACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCCGAAGCTCTTTACAAAGTAGACAATACCGAGGTTAGGCAGTTTGTAGAGAAATGCTTAGCAACTGTGTCCCTCAGACTTTCAGCTAGGGAACTCTTGGATGACCCTTTTCTCCAAATTTATGATTATGGATTTGACTCAAAAGTTGTGCAGTATCATAGAGATTGCTATGAAGTAAACCCATTAATTAGACAACCTTTGAATGGAATTTACAGCATTAACAACAACTTAATGAGTGGGGACACTGATAATGTTGGTGGTTATGGACCTGTATCTAAATTGGATTATCATCGAGACGATTTTGAAGCAAGTGAAATTGGTCTCTTTGGTTGTGAAGAGGATGACAATTTGGCCGAAGTTGACACCACAATCAAAGGTAGAAGAGAAGATGATGGCATCTTTTTGAGACTCAGAATAGCAGATAAGGAAGGTCGAATTAGAAACATCTACTTCCCATTTGACATTGAGACTGATACCGCACTGAGTGTTGCAAATGAAATGGTAGCTGAGCTTGATATAAATGACCAAGATGTAACAAATTTAGCAAATATGATAGACAATGAAATTGCAACATTGGTTCCAGAGTGGAAAACAGGACCCATAATAGAGGAAAAATCAGAATGTTCAAGTGCAAGTGTCTGCCTCAATTGTGCTGCAAACGGTTACTTGTTTGATTATGTATTATCAAATAATCCATGTGGCAAGAACCTTCAATTTCTTCATTGTTCTAAAACTGGATGTGCTGCAGTTCATGGCCGATTCGAAGAGATAACATACCAAGTTGAAGGGTCTAAAAATAGTGCTAGAGAAGGTGCATTAGATGCATCAAGCCAATCCAATGACATTCAATATACAGATATCTGGGCTCAGAGAGATGAACCAGAGTTATGCCATGAAGAGTTAAAAGACATACACTGTGACCAAGCTCATGAGGCATCAAACTCATCAAACATCAAGGAGGATGGAAAAACTATTAATGTGGATGAACAAAGTGATCTCAATACCAGAAAGCCTTCTTCAAACCCTGCACCAAATTGTGTTTTCTTGGACTATGAAAATGAAATTAGGCAAGAACTAAGATGGCTCAAAGCAAAGTACCAGATGCAGCTAAGGGAGCTTAGAGACCAACAACTTGGGGGTAAACCAAAATTTACTAGCATATCTCCTGACACCGATAAATTGGAGCATTTGAAAGATGGAATTCTGAGGCTATCAGATGCATCCAACTTGAAGATACAAAACAATAAACCACTATTGAAAACTATAGTTTCTGGGAAGCATTTTCATATTGAATCGGAGAAATGCAACAGTTTGGCTGATCAAATGGTTCAAAATGTTGATGAGATTCGTCGGTCTAACAGTCCTGAGCAAATGATCACAGTCAAGGATTTCTTTACAGGAGTATTGCTTCCACACTCACTTCAGAGGGCAACCTCACTTCCTGTTGATGCAGTAGATGTCTAG

Predicted protein sequences of Glyma10g39390

Limit To All Plant Sequences

>Glyma10g39390.2   sequence type=predicted peptide   gene model=Glyma10g39390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNGAAFVVAECCEYVEVDPTGRYGRYSEILGKGASKTVYRAFDEYEGIEVAWNQVKFYDFLQNPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTTNRHINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILEGLLYLHSHDPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVDNTEVRQFVEKCLATVSLRLSARELLDDPFLQIYDYGFDSKVVQYHRDCYEVNPLIRQPLNGIYSINNNLMSGDTDNVGGYGPVSKLDYHRDDFEASEIGLFGCEEDDNLAEVDTTIKGRREDDGIFLRLRIADKEGRIRNIYFPFDIETDTALSVANEMVAELDINDQDVTNLANMIDNEIATLVPEWKTGPIIEEKSECSSASVCLNCAANGYLFDYVLSNNPCGKNLQFLHCSKTGCAAVHGRFEEITYQVEGSKNSAREGALDASSQSNDIQYTDIWAQRDEPELCHEELKDIHCDQAHEASNSSNIKEDGKTINVDEQSDLNTRKPSSNPAPNCVFLDYENEIRQELRWLKAKYQMQLRELRDQQLGGKPKFTSISPDTDKLEHLKDGILRLSDASNLKIQNNKPLLKTIVSGKHFHIESEKCNSLADQMVQNVDEIRRSNSPEQMITVKDFFTGVLLPHSLQRATSLPVDAVDV*

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