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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G36280 | AT | Annotation by Michelle Graham. TAIR10: L-Aspartase-like family protein | chr1:13640600-13642908 FORWARD LENGTH=527 | SoyBase | E_val: 0 | ISS |
| GO:0006188 | GO-bp | Annotation by Michelle Graham. GO Biological Process: IMP biosynthetic process | SoyBase | N/A | ISS |
| GO:0009113 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleobase biosynthetic process | SoyBase | N/A | ISS |
| GO:0009152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine ribonucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004018 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity | SoyBase | N/A | ISS |
| KOG2700 | KOG | Adenylosuccinate lyase | JGI | ISS | |
| PTHR11444 | Panther | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE | JGI | ISS | |
| PTHR11444:SF2 | Panther | FUMARATE HYDRATASE CLASS II | JGI | ISS | |
| PF00206 | PFAM | Lyase | JGI | ISS | |
| PF08328 | PFAM | Adenylosuccinate lyase C-terminal | JGI | ISS | |
| UniRef100_Q8VZX0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Adenylosuccinate-AMP lyase n=1 Tax=Vigna unguiculata RepID=Q8VZX0_VIGUN | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233CABD | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233CABD related cluster n=1 Tax=unknown RepID=UPI000233CABD | SoyBase | E_val: 0 | ISS |
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Glyma10g39305 not represented in the dataset |
Glyma10g39305 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g28590 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g247800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g39305.2 sequence type=transcript gene model=Glyma10g39305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTCGTGGCACTCTCTAACGCTACCCAACTTGGGAGCTTCAACCCCCTTAGAACCAACCTTCAAAAGGTTGCTCTTGCAAAGCCATCCTCAGCACTCACACACCCACCCACCTCTACCCACAACATTTTTGGACCTCATTCCGCTGATTTTGAGCTCTCTGCTTTGACGGCTCTATCCCCATTGGATGGTCGTTATTGGGGAAAAGTTAAGGAACTGTCTCCTTTTCTGAGAGAATATGGCTTAATATGCTTTCGGATTAAATGGTTGCTGCAGCTGTCTCAGATTCCTGAAATTGTTGAGGTTCCCAGTTTCAGTGAAGGTGCTACAATATTTTTACAAGGCTTGATTGATGACTTTAGTGTTGATGATGCCTTGGAGGTTAAGAACATTGAGAGGGTCACAAATCATGATGTGAAAGCAGTGGAGTACTTCTTGAAACAGAATTCTGATGGATTATGTTATTCTAAAACCCTTTTTGATATAAATAATCTTGCACATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGGATAAAATAATCAAAGCTTTGTGTGACATATCTGAAGATAATGCTCATGTCCCGATGCTTTCTCGCACTCATGGACAGAATCAATGTATTATTGTGGGCTCAGAGAAAGGAAGGAACTGTCTCAGGTTGAGAATATTGGGGAAATTTTCTGGTGCAGTTGGAAATTACAATGCACATGTTGTTTCATATCCTGAAGTTAACTGGCCTCACATTGCAGAACAGTTTGTACAATCTCTTGGATTAAGTTTTAATCCTTATGTTGCTCAGATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTTGCTCATCCAGTTCAATAATATATTGATTGAATTTGATAGAGATGTATGGGGCTATATATCTTTGGGTTACTTTAACCAGACCACTAAGGCTGGGGAGGTTGGGTCTTCAACTATGCCTCACAAAGTGAATCCTATTGATTTTGAGAACAGCGAAGGTAATCTAGGTGTAGCTAATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCAATTTCGCATTGGCAGGCAAGGCCTACTTGAGTTTGATTTTTTTTTTTTTGGTATTATTATGGTCATTTTGGTATTGCTATTATTCTAAACTATGGTGCCAAGAGGATTTTACCAATATATCTTTTGGAAATTGGTTTGTGTAATTTTTTGTACACACATTGCAAATAATGTGCTATGGAAAGAGTTACCAAGCTATTGTAATCTATGGTACAATTTGGCTAGCTAGTGATTTGTATCATAA
>Glyma10g39305.1 sequence type=CDS gene model=Glyma10g39305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTCGTGGCACTCTCTAACGCTACCCAACTTGGGAGCTTCAACCCCCTTAGAACCAACCTTCAAAAGGTTGCTCTTGCAAAGCCATCCTCAGCACTCACACACCCACCCACCTCTACCCACAACATTTTTGGACCTCATTCCGCTGATTTTGAGCTCTCTGCTTTGACGGCTCTATCCCCATTGGATGGTCGTTATTGGGGAAAAGTTAAGGAACTGTCTCCTTTTCTGAGAGAATATGGCTTAATATGCTTTCGGATTAAATGGTTGCTGCAGCTGTCTCAGATTCCTGAAATTGTTGAGGTTCCCAGTTTCAGTGAAGGTGCTACAATATTTTTACAAGGCTTGATTGATGACTTTAGTGTTGATGATGCCTTGGAGGTTAAGAACATTGAGAGGGTCACAAATCATGATGTGAAAGCAGTGGAGTACTTCTTGAAACAGAATTCTGATGGATTATGTTATTCTAAAACCCTTTTTGATATAAATAATCTTGCACATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGGATAAAATAATCAAAGCTTTGTGTGACATATCTGAAGATAATGCTCATGTCCCGATGCTTTCTCGCACTCATGGACAGAATCAATGTATTATTGTGGGCTCAGAGAAAGGAAGGAACTGTCTCAGGTTGAGAATATTGGGGAAATTTTCTGGTGCAGTTGGAAATTACAATGCACATGTTGTTTCATATCCTGAAGTTAACTGGCCTCACATTGCAGAACAGTTTGTACAATCTCTTGGATTAAGTTTTAATCCTTATGTTGCTCAGATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTTGCTCATCCAGTTCAATAATATATTGATTGAATTTGATAGAGATGTATGGGGCTATATATCTTTGGGTTACTTTAACCAGACCACTAAGGCTGGGGAGGTTGGGTCTTCAACTATGCCTCACAAAGTGAATCCTATTGATTTTGAGAACAGCGAAGGTAATCTAGGTGTAGCTAATGGAGGTCTGTCTCATCTAAGCATGAATTTAAGTTATTACATTGAATTGAATACTATACATTTATATGATATATTTCAAAGGGACTTGACAGATTCAACTGTCTTAAGGAACATGGGTGTAGGCATAGGGCATTCTCTTCTTGCCTACAAAAGCACACTTCGAGAAATAGGGAAGCTTCAGGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTGCTGAACCAATACAGACTGTTATGCGAAGATATGGTGTTTCCGAACCTTATGAGAAGTTAAAAGAACTAACCAGAGGGAGAGCAGTTACCCAAAAGAGCATAAGAGACTTCATTGAAGGCTTATATATTCCAGAAGAAGCAAAGATGAATCTGTTAAAGTTAACACCTGATACTTATGTTGGAGCAGCAGTTGAATTGGCTAGAACAGTGAAAAATGTCGTGAATACTGTGTATGGAAGAAAGATCTAG >Glyma10g39305.2 sequence type=CDS gene model=Glyma10g39305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTCGTGGCACTCTCTAACGCTACCCAACTTGGGAGCTTCAACCCCCTTAGAACCAACCTTCAAAAGGTTGCTCTTGCAAAGCCATCCTCAGCACTCACACACCCACCCACCTCTACCCACAACATTTTTGGACCTCATTCCGCTGATTTTGAGCTCTCTGCTTTGACGGCTCTATCCCCATTGGATGGTCGTTATTGGGGAAAAGTTAAGGAACTGTCTCCTTTTCTGAGAGAATATGGCTTAATATGCTTTCGGATTAAATGGTTGCTGCAGCTGTCTCAGATTCCTGAAATTGTTGAGGTTCCCAGTTTCAGTGAAGGTGCTACAATATTTTTACAAGGCTTGATTGATGACTTTAGTGTTGATGATGCCTTGGAGGTTAAGAACATTGAGAGGGTCACAAATCATGATGTGAAAGCAGTGGAGTACTTCTTGAAACAGAATTCTGATGGATTATGTTATTCTAAAACCCTTTTTGATATAAATAATCTTGCACATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGGATAAAATAATCAAAGCTTTGTGTGACATATCTGAAGATAATGCTCATGTCCCGATGCTTTCTCGCACTCATGGACAGAATCAATGTATTATTGTGGGCTCAGAGAAAGGAAGGAACTGTCTCAGGTTGAGAATATTGGGGAAATTTTCTGGTGCAGTTGGAAATTACAATGCACATGTTGTTTCATATCCTGAAGTTAACTGGCCTCACATTGCAGAACAGTTTGTACAATCTCTTGGATTAAGTTTTAATCCTTATGTTGCTCAGATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTTGCTCATCCAGTTCAATAATATATTGATTGAATTTGATAGAGATGTATGGGGCTATATATCTTTGGGTTACTTTAACCAGACCACTAAGGCTGGGGAGGTTGGGTCTTCAACTATGCCTCACAAAGTGAATCCTATTGATTTTGAGAACAGCGAAGGTAATCTAGGTGTAGCTAATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCAATTTCGCATTGGCAGGCAAGGCCTACTTGA
>Glyma10g39305.1 sequence type=predicted peptide gene model=Glyma10g39305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFVALSNATQLGSFNPLRTNLQKVALAKPSSALTHPPTSTHNIFGPHSADFELSALTALSPLDGRYWGKVKELSPFLREYGLICFRIKWLLQLSQIPEIVEVPSFSEGATIFLQGLIDDFSVDDALEVKNIERVTNHDVKAVEYFLKQNSDGLCYSKTLFDINNLAHALMLKETMNSVMDKIIKALCDISEDNAHVPMLSRTHGQNQCIIVGSEKGRNCLRLRILGKFSGAVGNYNAHVVSYPEVNWPHIAEQFVQSLGLSFNPYVAQIETHDYMAKLFHLLIQFNNILIEFDRDVWGYISLGYFNQTTKAGEVGSSTMPHKVNPIDFENSEGNLGVANGGLSHLSMNLSYYIELNTIHLYDIFQRDLTDSTVLRNMGVGIGHSLLAYKSTLREIGKLQVNEARLSEDLNQCWEVLAEPIQTVMRRYGVSEPYEKLKELTRGRAVTQKSIRDFIEGLYIPEEAKMNLLKLTPDTYVGAAVELARTVKNVVNTVYGRKI* >Glyma10g39305.2 sequence type=predicted peptide gene model=Glyma10g39305 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFVALSNATQLGSFNPLRTNLQKVALAKPSSALTHPPTSTHNIFGPHSADFELSALTALSPLDGRYWGKVKELSPFLREYGLICFRIKWLLQLSQIPEIVEVPSFSEGATIFLQGLIDDFSVDDALEVKNIERVTNHDVKAVEYFLKQNSDGLCYSKTLFDINNLAHALMLKETMNSVMDKIIKALCDISEDNAHVPMLSRTHGQNQCIIVGSEKGRNCLRLRILGKFSGAVGNYNAHVVSYPEVNWPHIAEQFVQSLGLSFNPYVAQIETHDYMAKLFHLLIQFNNILIEFDRDVWGYISLGYFNQTTKAGEVGSSTMPHKVNPIDFENSEGNLGVANGGLSHLSMKLPISHWQARPT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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