SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G14850 | AT | Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr4:8513947-8516275 FORWARD LENGTH=684 | SoyBase | E_val: 0 | ISS |
| GO:0016125 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol metabolic process | SoyBase | N/A | ISS |
| GO:0019287 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate pathway | SoyBase | N/A | ISS |
| GO:0019288 | GO-bp | Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0050790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of catalytic activity | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0034046 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: poly(G) RNA binding | SoyBase | N/A | ISS |
| PTHR24015 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24015:SF62 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01535 | PFAM | PPR repeat | JGI | ISS | |
| UniRef100_G7K7Q4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7K7Q4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LE43 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LE43_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g39290 not represented in the dataset |
Glyma10g39290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g247700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g39290.1 sequence type=CDS gene model=Glyma10g39290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAATGTGCCGCGTCCTCCAAACCTGCTTGGTTCTTTTCTGGAATCAGCCGTTTTAAGTCGCTCCTCCCTCCTCGGCCGTGCCGTCCACGCGCACATCCTCAGAACCCATGACACCCCTCTCCCCTCCTTCCTCTGCAACCACCTCGTCAATATGTACTCCAAACTCGACCTTCCCAACTCAGCTCAACTCGTTCTCTCACTCACCAACCCTCGCACCGTCGTCACCTGGACCTCTCTCATCTCCGGCTGCGTTCACAACCGTCGTTTCACCTCCGCCCTCCTCCACTTCTCTAACATGCGCCGCGAGTGCGTCCTCCCTAATGACTTCACGTTTCCCTGCGTCTTCAAAGCCTCGGCTTCGTTGCACATGCCCGTCACCGGGAAACAGCTCCACGCCCTTGCCCTAAAGGGTGGCAATATATTGGACGTTTTTGTCGGGTGCAGCGCCTTTGACATGTACAGCAAAACAGGCCTTCGACCCGAGGCTCGCAACATGTTCGATGAAATGCCGCACAGAAACTTGGCCACGTGGAATGCGTATATGTCTAATGCAGTTCAGGATGGTCGGTGTTTGGATGCAATTGCAGCGTTTAAGAAGTTTCTTTGTGTGGATGGAGAGCCTAATGCAATAACATTTTGTGCATTTCTCAATGCGTGTGCTGACATTGTGAGTTTGGAGCTTGGGCGTCAGTTACATGGATTTATAGTTAGGAGCCGGTACAGGGAGGATGTTTCTGTTTTTAATGGACTTATTGATTTCTATGGAAAATGTGGGGATATTGTGTCTTCTGAATTGGTTTTTAGTAGAATTGGTAGTGGCAGGAGGAATGTTGTTTCTTGGTGCTCTTTGCTTGCTGCTCTTGTGCAAAACCATGAGGAAGAAAGGGCGTGTATGGTTTTCCTGCAGGCGAGGAAGGAAGTTGAGCCGACGGATTTCATGATATCAAGCGTACTCAGTGCATGTGCTGAGCTCGGGGGGCTTGAATTGGGAAGATCAGTTCATGCTCTTGCTCTTAAAGCATGTGTTGAGGAGAATATATTTGTTGGGAGTGCACTTGTTGACTTGTATGGAAAATGTGGAAGTATAGAGTACGCGGAGCAAGTCTTTAGAGAAATGCCTGAGAGGAACCTAGTCACTTGGAATGCAATGATAGGTGGATATGCACATCTGGGTGATGTTGACATGGCTTTGAGTCTCTTTCAGGAGATGACATCGGGCAGCTGTGGCATAGCACTGAGTTATGTGACACTAGTTTCGGTATTGTCAGCATGTAGTAGGGCAGGGGCAGTGGAGAGAGGCTTGCAGATATTTGAATCCATGAGAGGGAGATATGGAATTGAACCAGGTGCTGAGCATTATGCATGCGTTGTGGACCTTCTTGGAAGGTCTGGTTTGGTAGATCGTGCATATGAATTTATTAAAAGAATGCCAATTCTTCCAACTATATCTGTTTGGGGAGCTCTACTCGGGGCTTGCAAGATGCATGGGAAAACAAAGTTGGGGAAAATTGCAGCAGAAAAATTATTTGAGCTTGATCCTGATGACTCTGGCAATCATGTAGTGTTTTCTAACATGCTTGCATCTGCTGGCAGATGGGAAGAAGCCACTATTGTCAGGAAGGAAATGAGAGATATTGGTATTAAAAAAAATGTTGGTTATAGTTGGGTTGCTGTAAAGAATAGAGTCCATGTTTTCCAAGCAAAGGATAGTTTTCATGAAAAGAACTCTGAAATTCAGGCAATGCTAGCTAAGCTGAGAGGGGAGATGAAAAAAGCTGGGTATGTTCCTGATGCCAATCTATCGCTCTTTGATTTAGAAGAAGAAGAAAAGGCTTCAGAAGTGTGGTACCACAGCGAGAAGATTGCCCTAGCTTTTGGCCTCATAACTCTCCCTCGTGGAGTGCCCATACGTATCACAAAAAATCTTAGGATCTGTATAGATTGTCATAGTGCCATTAAGTTCATCTCAAAAATTGTTGGAAGAGAAATTATTGTGAGAGATAATAATCGTTTTCATCGCTTTAAAGATGGCTGGTGCTCTTGTAAAGATTATTGGTAA
>Glyma10g39290.1 sequence type=predicted peptide gene model=Glyma10g39290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MNVPRPPNLLGSFLESAVLSRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKEVEPTDFMISSVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCSCKDYW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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