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Report for Sequence Feature Glyma10g39270

Feature Type:gene_model
Chromosome:Gm10
Start:46997983
stop:46999557
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22490AT Annotation by Michelle Graham. TAIR10: Seed maturation protein | chr3:7969785-7970738 REVERSE LENGTH=262 SoyBaseE_val: 1.00E-104ISS
GO:0009793GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF04927PFAM Seed maturation protein JGI ISS
UniRef100_I1LE41UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LE41_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9SEL0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Seed maturation protein PM24 n=1 Tax=Glycine max RepID=Q9SEL0_SOYBN SoyBaseE_val: 5.00E-156ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g39270 not represented in the dataset

Glyma10g39270 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma20g28550 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g247500 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g39270.1   sequence type=CDS   gene model=Glyma10g39270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAGGAGCAGCCAAGGCGCCCCCAAGGCCAAGACCCCATCAAATACGGCGACGTTTTTGACGTCTACGGTGACCTTGCACAGATGCCCATTGCACCGGAAGATGCTGCCATGATGCAAAGCGCGGAAGCTCGAGTACTCGGAAAAACCCAACCCGGCGGAGCTTCTTCCGTCATGCAATCCGCCGCCACAAGGAATGAACAGGCTGGTCTTGTCGGTCACCAGGACGTCACCGACATCACCGGCGACCATGGCGTCACAGTCACAGAAACTACATTCCATGGAAGACGCATAATAACCGAGGCTGTTGGTGGCCAGGTAGTGGAACAGTATGTGGAGCCAAATCCAGTTGAGGCTGGACGAACCAGTGCAATTAAGGAGAGTGCTATAACAATAGGAGAGGCATTGGAGGCCACGGCACAGACGGTGGGTCACAAGCCGGTGGATCAGAGTGATGCCTCAGCGATTCAGGCGGCGGAGGTTAGAGCAACGGGAAGTAACGTTATAACGCCGGGAGGACTTGCGGCTATGGCTCAATCAGCTGCTGCTTATAATGCTGACTGCAAGCATGACCAGGACAAGGTCAAGCTTGCCGACGTTCTGACCGGAGCAACCGCCAAATTGCCCGCGGACAAGGCCGCGACGCTGCAAGATGCTGAAGGGGTGGCGAGTGCTGAGGCCAGGAACAACCCCGATGCCACCGCCACTCCCGGTGGGGTAGCCGCTTCTGTTGCGGCTGCTGCTAGGCTCAATGAAAATGTTAAGTAA

>Glyma10g39270.1   sequence type=predicted peptide   gene model=Glyma10g39270   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQEQPRRPQGQDPIKYGDVFDVYGDLAQMPIAPEDAAMMQSAEARVLGKTQPGGASSVMQSAATRNEQAGLVGHQDVTDITGDHGVTVTETTFHGRRIITEAVGGQVVEQYVEPNPVEAGRTSAIKESAITIGEALEATAQTVGHKPVDQSDASAIQAAEVRATGSNVITPGGLAAMAQSAAAYNADCKHDQDKVKLADVLTGATAKLPADKAATLQDAEGVASAEARNNPDATATPGGVAASVAAAARLNENVK*







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