Glyma10g39170 - SoyBase

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Report for Sequence Feature Glyma10g39170

Feature Type:	gene_model
Chromosome:	Gm10
Start:	46900407
stop:	46902990
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g39170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G22640	AT	Annotation by Michelle Graham. TAIR10: cupin family protein \| chr3:8011902-8013883 REVERSE LENGTH=486	SoyBase	E_val: 1.00E-64	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009845	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed germination	SoyBase	N/A	ISS
GO:0019915	GO-bp	Annotation by Michelle Graham. GO Biological Process: lipid storage	SoyBase	N/A	ISS
GO:0050826	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to freezing	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0045735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity	SoyBase	N/A	ISS
PF00190	PFAM	Cupin	JGI		ISS
UniRef100_I1LE33	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LE33_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q948Y0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Beta-conglycinin alpha prime subunit n=1 Tax=Glycine max RepID=Q948Y0_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma10g39170

Locus	Gene Symbol	Protein Name
	Cgy1	beta-conglycinin 1, beta chain-like

Expression Patterns of Glyma10g39170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g39170 not represented in the dataset	Glyma10g39170 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g39170

Paralog	Evidence	Comments
Glyma20g28466	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g39170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g246500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g39170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g39170

Limit To All Plant Sequences

>Glyma10g39170.2   sequence type=transcript   gene model=Glyma10g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACCGTGTTTTCATCATCACACAAGAGCGAGCGCAACATTATTCGAGTACGTAGCTTAACAATATTTTAAGCAATTGCTGCTACAATGATAGCGCGGTTTCCTTTGTTGCCGTTGCTGTTGCTGGGAATTGTTTTTCTAGCATCAGTTTCTGTCTCATTACAGGTGAAGCCGCCGAGTCACCACGAGTGCCTCCAGAGTTGCGAGAGTGAAACGGATCCATACAAGCGGAAAGCATGCAAGCTTAGTTGCAAGTTCGTTCCTGAGCACGGGGAGCAACAACATGAAGAAGAAGAAAGAGAAAGAGAACATCCACAACCACACCCACCACACGAGGAGAGAGGACGTAGAGAAAGAGGACGCCAGGAAGGTGAGAAGGAGGAAAAGGAACAAGACGAGCGTGAATTACAACCACGTCCATTTCCACGACCAGAGGAGCATGAAGGAGAACAGTGGAAAGGAAGGCATCGTCATGAAGACCCGGAAGAGAGGGCGAGAATGAGACTGAGGGAAGCAGAAAGAATAGAGAGGGAAAGGGAGGAACAGAGGGTGAGGGAGGAGGAAGAGAAACTCCGGCGACGTGAGAAGAAGGAACAACGGGAAGAGAAAGAAGAAGAAGGTCAAGGTTCGGAAGACTCACACTCAAAAAGACAGAACAACCCTTTTCACTTCAGCTCTAACAGGTTCCAAACGCTCTTCAAGAACCAACATGGTCACCTTCGCGTCCTCCAGAGATTCGACCAACGCTCCCCACAACTTGAGAACCTTCGAGACTACCGTGTTGTAGAGCTCATGGCTAAACCCAACACCCTCTTTCTCCCCCACCACGCTGACGCTGATTTTCTCCTCCTTGTCCTTAGCGGGAGAGCCTTAATTAACTTGGTGAAACCCGACGACAGAGACCCCTACTACCTTGACCGTGGTTATGCACAAAGAATCCCTGCAGGAACCACTGTCTATTTGGTTAACCCGGACAAGAAGAAAGATCTCAGAGTGATTAAACTCGCCATACCCGTTAACAAACCTGGCAATTTTGAGGATTTCTTCCTATCTAGCACTCAAGACCAGCAATCCTACTTGCAAGGCTTCAGCGAGAATATTCTGGAGGCTTCCTTCAATACCAAATTCGAGGAGATAAACAGGGTTTTGTTTGGTGGAGAGGGGAGGCGGCACCAGCAAGAGGGAGTGATTTTGGAACTATCAAAGGAACAGATTCGGGAACTGAGCAAGCGTGCCAAATCTAGTTCAAGGAGTACTAATTCCTTCGATTATGAACCATTCTACTTGAGAGGCTCCCAAATCTCTTCCAACAACTTTGGAAAGTTCTATGAGATCACCCCTGAGAAGAACCCCCAGCTTCGGGACTTTGATATCCTCCTCAATACTGTGGATATCAACGAGGGAGGTCTTCTTCTGCCACACTACAATTCAAAGGCCATAGTGATACTAATGGTTACTGAAGGAGAAGCAAACATTGAACTCGTTGGCCTAAAAGAACAGCAACAGGGAGAGGAAACAAGGGAAGTGCGAAAGTATAGAGCCGAGTTGTCTGAAGACGATATATTTGTAATCCCAGCAGCTTATCCATTTGTGGTCAACGCTACCTCAAACCTCAATTTCGTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGGTACTATACATATATAATATTGATTATTGAATACCCTGTTGTTACTTTTTGTTGTTTTATGGCATGTGGAAGCATGCTGATTGGGTTATTTAATTATTTCCAATTCTTGGTGCGTGTGATTGAAAATTTGAAGGTTCGAAAGACAATGTGATAAGACAGATACAAAAACAGGTGAAGGAGCTTGCGTTCCCTGCTGGGTCTGCACAAGATATCGAGAATCTAATAAAGAACCAGAGGGAATCCTATTTTGCTGATGCTCAGCCTTTGCAAAAGGAGGAAGGGAAGAAAGGGTCCTTTGTCTTTTGAATATGTATGCTTAGGAGACTAGGAGTTCACAGCGAGCGAGGAAAGTATAGGGATATGTAACTAGAATAACTTGAGATCCACCTTTCTACTACTAGTAAATAAAATAAATAAATCGAGCAAGATGGTTTTGTTTACTATCTGCTAAGCAATTTTGATATGGTTGGAACGTACATAT

Coding sequences of Glyma10g39170

Limit To All Plant Sequences

>Glyma10g39170.1   sequence type=CDS   gene model=Glyma10g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGCGCGGTTTCCTTTGTTGCCGTTGCTGTTGCTGGGAATTGTTTTTCTAGCATCAGTTTCTGTCTCATTACAGGTGAAGCCGCCGAGTCACCACGAGTGCCTCCAGAGTTGCGAGAGTGAAACGGATCCATACAAGCGGAAAGCATGCAAGCTTAGTTGCAAGTTCGTTCCTGAGCACGGGGAGCAACAACATGAAGAAGAAGAAAGAGAAAGAGAACATCCACAACCACACCCACCACACGAGGAGAGAGGACGTAGAGAAAGAGGACGCCAGGAAGGTGAGAAGGAGGAAAAGGAACAAGACGAGCGTGAATTACAACCACGTCCATTTCCACGACCAGAGGAGCATGAAGGAGAACAGTGGAAAGGAAGGCATCGTCATGAAGACCCGGAAGAGAGGGCGAGAATGAGACTGAGGGAAGCAGAAAGAATAGAGAGGGAAAGGGAGGAACAGAGGGTGAGGGAGGAGGAAGAGAAACTCCGGCGACGTGAGAAGAAGGAACAACGGGAAGAGAAAGAAGAAGAAGGTCAAGGTTCGGAAGACTCACACTCAAAAAGACAGAACAACCCTTTTCACTTCAGCTCTAACAGGTTCCAAACGCTCTTCAAGAACCAACATGGTCACCTTCGCGTCCTCCAGAGATTCGACCAACGCTCCCCACAACTTGAGAACCTTCGAGACTACCGTGTTGTAGAGCTCATGGCTAAACCCAACACCCTCTTTCTCCCCCACCACGCTGACGCTGATTTTCTCCTCCTTGTCCTTAGCGGGAGAGCCTTAATTAACTTGGTGAAACCCGACGACAGAGACCCCTACTACCTTGACCGTGGTTATGCACAAAGAATCCCTGCAGGAACCACTGTCTATTTGGTTAACCCGGACAAGAAGAAAGATCTCAGAGTGATTAAACTCGCCATACCCGTTAACAAACCTGGCAATTTTGAGGATTTCTTCCTATCTAGCACTCAAGACCAGCAATCCTACTTGCAAGGCTTCAGCGAGAATATTCTGGAGGCTTCCTTCAATACCAAATTCGAGGAGATAAACAGGGTTTTGTTTGGTGGAGAGGGGAGGCGGCACCAGCAAGAGGGAGTGATTTTGGAACTATCAAAGGAACAGATTCGGGAACTGAGCAAGCGTGCCAAATCTAGTTCAAGGAGTACTAATTCCTTCGATTATGAACCATTCTACTTGAGAGGCTCCCAAATCTCTTCCAACAACTTTGGAAAGTTCTATGAGATCACCCCTGAGAAGAACCCCCAGCTTCGGGACTTTGATATCCTCCTCAATACTGTGGATATCAACGAGGGAGGTCTTCTTCTGCCACACTACAATTCAAAGGCCATAGTGATACTAATGGTTACTGAAGGAGAAGCAAACATTGAACTCGTTGGCCTAAAAGAACAGCAACAGGGAGAGGAAACAAGGGAAGTGCGAAAGTATAGAGCCGAGTTGTCTGAAGACGATATATTTGTAATCCCAGCAGCTTATCCATTTGTGGTCAACGCTACCTCAAACCTCAATTTCGTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGGTTCGAAAGACAATGTGATAAGACAGATACAAAAACAGGTGAAGGAGCTTGCGTTCCCTGCTGGGTCTGCACAAGATATCGAGAATCTAATAAAGAACCAGAGGGAATCCTATTTTGCTGATGCTCAGCCTTTGCAAAAGGAGGAAGGGAAGAAAGGGTCCTTTGTCTTTTGA

>Glyma10g39170.2   sequence type=CDS   gene model=Glyma10g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAGCGCGGTTTCCTTTGTTGCCGTTGCTGTTGCTGGGAATTGTTTTTCTAGCATCAGTTTCTGTCTCATTACAGGTGAAGCCGCCGAGTCACCACGAGTGCCTCCAGAGTTGCGAGAGTGAAACGGATCCATACAAGCGGAAAGCATGCAAGCTTAGTTGCAAGTTCGTTCCTGAGCACGGGGAGCAACAACATGAAGAAGAAGAAAGAGAAAGAGAACATCCACAACCACACCCACCACACGAGGAGAGAGGACGTAGAGAAAGAGGACGCCAGGAAGGTGAGAAGGAGGAAAAGGAACAAGACGAGCGTGAATTACAACCACGTCCATTTCCACGACCAGAGGAGCATGAAGGAGAACAGTGGAAAGGAAGGCATCGTCATGAAGACCCGGAAGAGAGGGCGAGAATGAGACTGAGGGAAGCAGAAAGAATAGAGAGGGAAAGGGAGGAACAGAGGGTGAGGGAGGAGGAAGAGAAACTCCGGCGACGTGAGAAGAAGGAACAACGGGAAGAGAAAGAAGAAGAAGGTCAAGGTTCGGAAGACTCACACTCAAAAAGACAGAACAACCCTTTTCACTTCAGCTCTAACAGGTTCCAAACGCTCTTCAAGAACCAACATGGTCACCTTCGCGTCCTCCAGAGATTCGACCAACGCTCCCCACAACTTGAGAACCTTCGAGACTACCGTGTTGTAGAGCTCATGGCTAAACCCAACACCCTCTTTCTCCCCCACCACGCTGACGCTGATTTTCTCCTCCTTGTCCTTAGCGGGAGAGCCTTAATTAACTTGGTGAAACCCGACGACAGAGACCCCTACTACCTTGACCGTGGTTATGCACAAAGAATCCCTGCAGGAACCACTGTCTATTTGGTTAACCCGGACAAGAAGAAAGATCTCAGAGTGATTAAACTCGCCATACCCGTTAACAAACCTGGCAATTTTGAGGATTTCTTCCTATCTAGCACTCAAGACCAGCAATCCTACTTGCAAGGCTTCAGCGAGAATATTCTGGAGGCTTCCTTCAATACCAAATTCGAGGAGATAAACAGGGTTTTGTTTGGTGGAGAGGGGAGGCGGCACCAGCAAGAGGGAGTGATTTTGGAACTATCAAAGGAACAGATTCGGGAACTGAGCAAGCGTGCCAAATCTAGTTCAAGGAGTACTAATTCCTTCGATTATGAACCATTCTACTTGAGAGGCTCCCAAATCTCTTCCAACAACTTTGGAAAGTTCTATGAGATCACCCCTGAGAAGAACCCCCAGCTTCGGGACTTTGATATCCTCCTCAATACTGTGGATATCAACGAGGGAGGTCTTCTTCTGCCACACTACAATTCAAAGGCCATAGTGATACTAATGGTTACTGAAGGAGAAGCAAACATTGAACTCGTTGGCCTAAAAGAACAGCAACAGGGAGAGGAAACAAGGGAAGTGCGAAAGTATAGAGCCGAGTTGTCTGAAGACGATATATTTGTAATCCCAGCAGCTTATCCATTTGTGGTCAACGCTACCTCAAACCTCAATTTCGTTGCTTTTGGTATCAATGCTGAGAACAACCAGAGGAACTTCCTTGCAGGTACTATACATATATAA

Predicted protein sequences of Glyma10g39170

Limit To All Plant Sequences

>Glyma10g39170.1   sequence type=predicted peptide   gene model=Glyma10g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIARFPLLPLLLLGIVFLASVSVSLQVKPPSHHECLQSCESETDPYKRKACKLSCKFVPEHGEQQHEEEEREREHPQPHPPHEERGRRERGRQEGEKEEKEQDERELQPRPFPRPEEHEGEQWKGRHRHEDPEERARMRLREAERIEREREEQRVREEEEKLRRREKKEQREEKEEEGQGSEDSHSKRQNNPFHFSSNRFQTLFKNQHGHLRVLQRFDQRSPQLENLRDYRVVELMAKPNTLFLPHHADADFLLLVLSGRALINLVKPDDRDPYYLDRGYAQRIPAGTTVYLVNPDKKKDLRVIKLAIPVNKPGNFEDFFLSSTQDQQSYLQGFSENILEASFNTKFEEINRVLFGGEGRRHQQEGVILELSKEQIRELSKRAKSSSRSTNSFDYEPFYLRGSQISSNNFGKFYEITPEKNPQLRDFDILLNTVDINEGGLLLPHYNSKAIVILMVTEGEANIELVGLKEQQQGEETREVRKYRAELSEDDIFVIPAAYPFVVNATSNLNFVAFGINAENNQRNFLAGSKDNVIRQIQKQVKELAFPAGSAQDIENLIKNQRESYFADAQPLQKEEGKKGSFVF*

>Glyma10g39170.2   sequence type=predicted peptide   gene model=Glyma10g39170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIARFPLLPLLLLGIVFLASVSVSLQVKPPSHHECLQSCESETDPYKRKACKLSCKFVPEHGEQQHEEEEREREHPQPHPPHEERGRRERGRQEGEKEEKEQDERELQPRPFPRPEEHEGEQWKGRHRHEDPEERARMRLREAERIEREREEQRVREEEEKLRRREKKEQREEKEEEGQGSEDSHSKRQNNPFHFSSNRFQTLFKNQHGHLRVLQRFDQRSPQLENLRDYRVVELMAKPNTLFLPHHADADFLLLVLSGRALINLVKPDDRDPYYLDRGYAQRIPAGTTVYLVNPDKKKDLRVIKLAIPVNKPGNFEDFFLSSTQDQQSYLQGFSENILEASFNTKFEEINRVLFGGEGRRHQQEGVILELSKEQIRELSKRAKSSSRSTNSFDYEPFYLRGSQISSNNFGKFYEITPEKNPQLRDFDILLNTVDINEGGLLLPHYNSKAIVILMVTEGEANIELVGLKEQQQGEETREVRKYRAELSEDDIFVIPAAYPFVVNATSNLNFVAFGINAENNQRNFLAGTIHI*

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