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Report for Sequence Feature Glyma10g39150

Feature Type:gene_model
Chromosome:Gm10
Start:46888029
stop:46890857
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g39150
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G22640AT Annotation by Michelle Graham. TAIR10: cupin family protein | chr3:8011902-8013883 REVERSE LENGTH=486 SoyBaseE_val: 2.00E-69ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0019915GO-bp Annotation by Michelle Graham. GO Biological Process: lipid storage SoyBaseN/AISS
GO:0050826GO-bp Annotation by Michelle Graham. GO Biological Process: response to freezing SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0009505GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall SoyBaseN/AISS
GO:0045735GO-mf Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity SoyBaseN/AISS
PF00190PFAM Cupin JGI ISS
UniRef100_Q4LER6UniRef Annotation by Michelle Graham. Best UniRef hit: Beta-conglycinin alpha prime subunit n=3 Tax=Glycine max RepID=Q4LER6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q4LER6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Beta-conglycinin alpha prime subunit n=3 Tax=Glycine max RepID=Q4LER6_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma10g39150
LocusGene SymbolProtein Name
Cgy1 beta-conglycinin alpha prime subunit 1
GM7S beta-conglycinin alpha prime subunit 1

Expression Patterns of Glyma10g39150
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g39150
ParalogEvidenceComments
Glyma20g28650 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g39150 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g246300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g39150
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g39150
>Glyma10g39150.1   sequence type=CDS   gene model=Glyma10g39150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGAGAGCGCGGTTCCCATTACTGTTGCTGGGAGTTGTTTTCCTGGCATCAGTTTCTGTCTCATTTGGCATTGCGTATTGGGAAAAGCAGAACCCCAGTCACAACAAGTGCCTCCGAAGTTGCAATAGCGAGAAAGACTCCTACAGGAACCAAGCATGCCACGCTCGTTGCAACCTCCTTAAGGTGGAGGAAGAAGAAGAATGCGAAGAAGGTCAAATTCCACGACCACGACCACAACACCCGGAGAGGGAACGTCAGCAACACGGTGAGAAGGAGGAAGACGAAGGTGAGCAGCCACGTCCATTCCCATTCCCACGCCCACGCCAACCTCATCAAGAGGAAGAGCACGAGCAGAAGGAGGAACACGAATGGCATCGCAAGGAGGAAAAACACGGAGGAAAGGGAAGTGAAGAGGAACAAGATGAACGTGAACACCCACGCCCACACCAACCTCATCAAAAGGAAGAGGAAAAGCACGAATGGCAACACAAGCAGGAAAAGCACCAAGGAAAGGAAAGTGAAGAAGAAGAAGAAGACCAAGACGAGGATGAGGAGCAAGACAAAGAGAGCCAAGAAAGTGAAGGTTCTGAGTCTCAAAGAGAACCACGAAGACATAAGAATAAGAACCCTTTTCACTTCAACTCTAAAAGGTTCCAAACTCTCTTCAAAAACCAATATGGCCACGTTCGCGTCCTCCAGAGGTTCAACAAACGCTCCCAACAGCTTCAGAATCTCCGAGACTACCGCATTTTGGAGTTCAACTCCAAACCCAACACCCTTCTTCTCCCCCACCATGCTGACGCTGATTACCTCATCGTTATCCTTAACGGGACTGCCATTCTTACCTTGGTGAACAACGACGACCGAGACTCTTACAACCTTCAATCTGGCGATGCCCTAAGAGTCCCTGCAGGAACCACATACTATGTGGTTAACCCTGACAACGACGAGAATCTCAGAATGATAACACTCGCCATACCCGTTAACAAACCCGGTAGATTTGAGAGTTTCTTCCTATCTAGCACTCAAGCTCAACAGTCCTACTTGCAAGGGTTCAGCAAGAATATTCTAGAGGCCTCATACGACACCAAATTCGAGGAGATAAACAAGGTTCTGTTTGGTAGAGAGGAGGGGCAGCAACAAGGGGAGGAGAGGCTGCAAGAGAGTGTGATTGTGGAAATCTCAAAGAAACAAATTCGGGAACTGAGCAAACATGCCAAATCTAGTTCAAGGAAAACCATTTCTTCTGAAGATAAACCTTTCAACTTGAGAAGCCGCGACCCCATCTATTCCAACAAGCTTGGCAAGTTGTTTGAGATTACCCCAGAGAAAAACCCTCAGCTTCGGGACTTGGATGTCTTCCTCAGTGTTGTGGATATGAACGAGGGAGCTCTTTTTCTGCCACACTTCAATTCAAAGGCCATAGTGGTACTAGTGATTAATGAAGGAGAAGCAAACATTGAACTTGTTGGCATTAAAGAACAACAACAGAGGCAGCAACAGGAAGAGCAACCTTTGGAAGTGCGGAAATATAGAGCTGAATTGTCTGAACAAGATATATTTGTAATCCCAGCAGGTTATCCAGTTGTGGTCAACGCTACCTCAGATCTGAATTTCTTTGCTTTTGGTATCAATGCCGAGAACAACCAGAGGAACTTCCTTGCAGGTTCGAAAGACAATGTGATAAGCCAGATACCTAGTCAAGTGCAGGAGCTTGCGTTCCCTGGGTCTGCAAAAGATATTGAGAACCTAATAAAGAGCCAAAGTGAGTCCTACTTTGTGGATGCTCAGCCTCAGCAGAAAGAGGAGGGGAACAAGGGAAGAAAGGGTCCTTTGTCTTCAATTTTGAGGGCTTTTTACTGA
Predicted protein sequences of Glyma10g39150
>Glyma10g39150.1   sequence type=predicted peptide   gene model=Glyma10g39150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMRARFPLLLLGVVFLASVSVSFGIAYWEKQNPSHNKCLRSCNSEKDSYRNQACHARCNLLKVEEEEECEEGQIPRPRPQHPERERQQHGEKEEDEGEQPRPFPFPRPRQPHQEEEHEQKEEHEWHRKEEKHGGKGSEEEQDEREHPRPHQPHQKEEEKHEWQHKQEKHQGKESEEEEEDQDEDEEQDKESQESEGSESQREPRRHKNKNPFHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPVNKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQESVIVEISKKQIRELSKHAKSSSRKTISSEDKPFNLRSRDPIYSNKLGKLFEITPEKNPQLRDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSDLNFFAFGINAENNQRNFLAGSKDNVISQIPSQVQELAFPGSAKDIENLIKSQSESYFVDAQPQQKEEGNKGRKGPLSSILRAFY*






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