SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G51700 | AT | Annotation by Michelle Graham. TAIR10: protein binding;zinc ion binding | chr5:21001373-21003143 REVERSE LENGTH=226 | SoyBase | E_val: 9.00E-105 | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006952 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response | SoyBase | N/A | ISS |
| GO:0009626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0009816 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium, incompatible interaction | SoyBase | N/A | ISS |
| GO:0009817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus, incompatible interaction | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0050821 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein stabilization | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0051879 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: Hsp90 protein binding | SoyBase | N/A | ISS |
| PTHR12621 | Panther | CYSTEINE AND HISTIDINE-RICH DOMAIN (CHORD)-CONTAINING PROTEIN | JGI | ISS | |
| PTHR12621:SF1 | Panther | RAR1 | JGI | ISS | |
| PF04968 | PFAM | CHORD | JGI | ISS | |
| UniRef100_B6EBD3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: RAR1 protein n=1 Tax=Glycine max RepID=B6EBD3_SOYBN | SoyBase | E_val: 3.00E-164 | ISS |
| UniRef100_B6EBD3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RAR1 protein n=1 Tax=Glycine max RepID=B6EBD3_SOYBN | SoyBase | E_val: 3.00E-164 | ISS |
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Glyma10g38720 not represented in the dataset |
Glyma10g38720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g29021 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g242200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g38720.2 sequence type=transcript gene model=Glyma10g38720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCAACTCAAAAACTGAAACCTGCTGGAAATTGAGTGGAAACTGAGATTCTGAGAGGAATCAGCTGTTTTTATTTTTTTTGAATTTTATTTTTATTTACTTATTTTTCCCTTTTTTCCGTATACTTGAACAGCATCAAAGCCCAACTCGTTTGAGTTTGGTGTGTTTGATCAATAAAATCACAATACAAAATCGTCTTGTGTTTTCTTTTCTTTTTGGACCTGAAAGTGTTGGAAACAACAAAACCACCGCACAGGGATCGTGTTGAGTTTGAGAATGGAGAAGACAGCAGTTAAAGTTCGATGCCAGAGGATTGGGTGCGACGCCATGTTCTCCGAGGACGACAACCCCGACGGTTGCTGTCGATACCATGATTCGGGACCTATATTTCATGACGGGACAAAAGAATGGAGTTGTTGCAAGAAAAGAAGTCATGATTTTAGCTTGTTTTTGGAAATTCCAGGATGCAAGACAGGAAAACATACAACAGTTAAGCAAGTAATTACACCAGTGAAGAAGAACACCATGCCTTCTCCAACCGCTGTTTGTTCAACCAATGCATCATCAAAGGACTCTTGTCCCAGATGTCAGCAGGGTTTCTTTTGCTCAGATCATGGCTCACAAAGCAAACCTGCAAATATTATTGGAGACAAGGCCGCAAATCTGGCTGGAGATGCATCTGTTGATAACAATTCAAGTGTTCATGCTCCGAAACCTAAGAAGATAGTTGATATAAATGAGCCACAAGTATGTAAAAATAAAGGATGCGGTCAAACTTTCAAGGAAAAGGATAATCATGACACTGCTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTCCTCCGTGCGCAAAGGGATGGCATAATGCGGATCCAGAGTCCTGATCACTGGAGACACAGAAGGACGAGTTATTTTCTTACAGTCTCAGATACTCTAATTGAAATGGAAAAGGTGTTTGTTGATTCATTGTTGTTGATTAATTAGAGCAAAACAGTGTCCACTCTTTTTTCATCTCCCTCATCCCCTTTGGATTGGTCAACCTCTATGGTTAATATGCAATAATGCAAAGTTACAAGAGGTCACTCCATCAGGATCATTTACTGTGGATAGTGTAGAATATGAATCTGTTGTCTTGTGTTCTTTGAATGTCGCCATTTGCTTTTGTTTGACTGGTTTGGACGGCTAATCTTGAAACATGTTGAACTCTATTGTTTTGCCACAGTGGTCTTGTCTCCCGGGCAA
>Glyma10g38720.1 sequence type=CDS gene model=Glyma10g38720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGACAGCAGTTAAAGTTCGATGCCAGAGGATTGGGTGCGACGCCATGTTCTCCGAGGACGACAACCCCGACGGTTGCTGTCGATACCATGATTCGCCTATATTTCATGACGGGACAAAAGAATGGAGTTGTTGCAAGAAAAGAAGTCATGATTTTAGCTTGTTTTTGGAAATTCCAGGATGCAAGACAGGAAAACATACAACAGTTAAGCAAGTAATTACACCAGTGAAGAAGAACACCATGCCTTCTCCAACCGCTGTTTGTTCAACCAATGCATCATCAAAGGACTCTTGTCCCAGATGTCAGCAGGGTTTCTTTTGCTCAGATCATGGCTCACAAAGCAAACCTGCAAATATTATTGGAGACAAGGCCGCAAATCTGGCTGGAGATGCATCTGTTGATAACAATTCAAGTGTTCATGCTCCGAAACCTAAGAAGATAGTTGATATAAATGAGCCACAAGTATGTAAAAATAAAGGATGCGGTCAAACTTTCAAGGAAAAGGATAATCATGACACTGCTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTCCTCCGTGCGCAAAGGGATGGCATAATGCGGATCCAGAGTCCTGA >Glyma10g38720.2 sequence type=CDS gene model=Glyma10g38720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAAGACAGCAGTTAAAGTTCGATGCCAGAGGATTGGGTGCGACGCCATGTTCTCCGAGGACGACAACCCCGACGGTTGCTGTCGATACCATGATTCGGGACCTATATTTCATGACGGGACAAAAGAATGGAGTTGTTGCAAGAAAAGAAGTCATGATTTTAGCTTGTTTTTGGAAATTCCAGGATGCAAGACAGGAAAACATACAACAGTTAAGCAAGTAATTACACCAGTGAAGAAGAACACCATGCCTTCTCCAACCGCTGTTTGTTCAACCAATGCATCATCAAAGGACTCTTGTCCCAGATGTCAGCAGGGTTTCTTTTGCTCAGATCATGGCTCACAAAGCAAACCTGCAAATATTATTGGAGACAAGGCCGCAAATCTGGCTGGAGATGCATCTGTTGATAACAATTCAAGTGTTCATGCTCCGAAACCTAAGAAGATAGTTGATATAAATGAGCCACAAGTATGTAAAAATAAAGGATGCGGTCAAACTTTCAAGGAAAAGGATAATCATGACACTGCTTGCAGCTACCACCCTGGCCCTGCTGTTTTTCATGACCGGATGAGAGGGTGGAAGTGCTGTGATATTCATGTAAAAGAATTTGATGAGTTTATGAGCATTCCTCCGTGCGCAAAGGGATGGCATAATGCGGATCCAGAGTCCTGA
>Glyma10g38720.1 sequence type=predicted peptide gene model=Glyma10g38720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKTAVKVRCQRIGCDAMFSEDDNPDGCCRYHDSPIFHDGTKEWSCCKKRSHDFSLFLEIPGCKTGKHTTVKQVITPVKKNTMPSPTAVCSTNASSKDSCPRCQQGFFCSDHGSQSKPANIIGDKAANLAGDASVDNNSSVHAPKPKKIVDINEPQVCKNKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIPPCAKGWHNADPES* >Glyma10g38720.2 sequence type=predicted peptide gene model=Glyma10g38720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEKTAVKVRCQRIGCDAMFSEDDNPDGCCRYHDSGPIFHDGTKEWSCCKKRSHDFSLFLEIPGCKTGKHTTVKQVITPVKKNTMPSPTAVCSTNASSKDSCPRCQQGFFCSDHGSQSKPANIIGDKAANLAGDASVDNNSSVHAPKPKKIVDINEPQVCKNKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIPPCAKGWHNADPES*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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