Glyma10g38670 - SoyBase

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Report for Sequence Feature Glyma10g38670

Feature Type:	gene_model
Chromosome:	Gm10
Start:	46457469
stop:	46465249
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g38670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28100	AT	Annotation by Michelle Graham. TAIR10: alpha-L-fucosidase 1 \| chr2:11974803-11976489 FORWARD LENGTH=506	SoyBase	E_val: 2.00E-168	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0006516	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycoprotein catabolic process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004560	GO-mf	Annotation by Michelle Graham. GO Molecular Function: alpha-L-fucosidase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
KOG3340	KOG	Alpha-L-fucosidase	JGI		ISS
PTHR10030	Panther	ALPHA-L-FUCOSIDASE	JGI		ISS
PTHR10030:SF0	Panther	ALPHA-L-FUCOSIDASE	JGI		ISS
PF01120	PFAM	Alpha-L-fucosidase	JGI		ISS
UniRef100_G7ID38	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha-L-fucosidase n=1 Tax=Medicago truncatula RepID=G7ID38_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LDX9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDX9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g38670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g38670 not represented in the dataset	Glyma10g38670 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g38670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g241800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g38670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g38670

Limit To All Plant Sequences

>Glyma10g38670.2   sequence type=transcript   gene model=Glyma10g38670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCACCACCTCGTTTTAGGCATATTCAAGATGAAGGGATACCGTGGTTAAGAAAAAGAGCATATATTAGTACCTACAGAGGGCACAAGAACAAGTACCAGAACAATAGGAGCATCATGGTTAGGCTATGGTGCTCTTCTCTCTCAATTACACTTTTATTCCAACAGCTCATCAGATTGTGCATTTCTTGGAGTGTGCAAACCCCAACACCCCCATTGCCAATCCTCCCTCTCCCAACATATTCCCAGTTGAAATGGCAACAAAGGGAGATCATAATGTTTTTCCATTTTGGTGTGAACACATTCAGTGACAGAGAATGGGGCACTGGCCAGGAAAACCCAGCAATCTTCAATCCAACGGGGCTCAACACCACCCAGTGGGCCACTGTGGCAGCAGATGCAGGAGTTTCATTGATGATATTAACTGCAAAACACCATGATGGCTTCTGCCTCTGGCCTTCCAAGTACACTGACCATTCTGTCATTAGCAGCCCCTGGCAAGGTGGCAAGGGTGATGTGGTTCAAGACTTTGTCAATGCAGCCACTGCACAAGGAATTGATGTAGGGGTCTACCTTTCACCTTGGGATAGACATGACCCTAGATATGGCAATGATTTGCTCTACAACCAATACTACTTGGCTCAACTACAAGAGTTGCTCAAGAAATATCCAAATGTTAGAGAGATTTGGTTCGATGGAGCAAAGGGTGCCAATGCAAAAAATATGACGTATTACTTTTCAGATTGGTTTTCCATGGTGAAGGAGCTGCAGAGTTCCATCAACATCTTCTCTGATGCAGGTCCTGATGTTAGGTGGGTGGGAGATGAAACAGGTTCTGCAGGGTATACATGTTGGTCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCAGTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATGTGATGTATCCATTCGAAAAGGATGGTTTTGGCACAAATCAGAATCACCAAAAAAGCTAAGCGAGCTACTTGACATTTATTACAATTCGGTTGGGAGAAATTGTGTGTTACTTCTCAATGTGCCTCCTAATACAAGTGGCCTTATAACTGAAGTTGATGCCAATAGATTGAAAGAGTTTAGAAGTGCAATCAAGACAATTTTCCATCAGAATCTTGCTGAGGATTGTTTTGTTAAAGTTAGTAGCCAAAGAGGGGGTTTCGGGCCAGAAAAGATGCTAGACAGTGACCACTTGTGGTCATACTGGGCCCCAAGGGACGATGATGATGAAAAGGACCATTGGGTTGAAATTTGGGCCAAGGAAGGGAGATTGAGATTCAATGTGGTTAGAATACAAGAGGCAATTGGTCTTGGTCAAAGGATCAAACGGCATGAAATCTATGTGGATGGTAAATTGATCATCAAAGCCACAACGGTTGGTTATAAGAGGCTTCATAGGCTTGATGGGGGTGAAGTGCACGCTCGTGGTGTGAGGATAAGAATTAGAAAGGCAAGAGGAGTGCCTCTTATCTCTTCTATTGGCTTGCATTATGATCCTTTCTGGCACTCAAAGTTTACTGTATCCTGAAGAGTTAAGTAAGTTTAGGTAAAGGAGCATAACTGCAATAAATTAAGTAGAGCCTTAAGAAGAATATTGAAATATTGTTCTATCAGTAAAGAACAAAAAATAAATTTACTTTAAATTTCTACATCCTATGTGTTCATATTGTTTTATCTTAACGAGGAACTAATTAAATATTGGAAAATTTACATGCTTGGATATGCTGTTTTCCATTATCTTAAATAAATTATGAATA

Coding sequences of Glyma10g38670

Limit To All Plant Sequences

>Glyma10g38670.1   sequence type=CDS   gene model=Glyma10g38670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAGGCTATGGTGCTCTTCTCTCTCAATTACACTTTTATTCCAACAGCTCATCAGATTGTGCATTTCTTGGAGTGTGCAAACCCCAACACCCCCATTGCCAATCCTCCCTCTCCCAACATATTCCCAGTTGAAATGGCAACAAAGGGAGATCATAATGTTTTTCCATTTTGGTGTGAACACATTCAGTGACAGAGAATGGGGCACTGGCCAGGAAAACCCAGCAATCTTCAATCCAACGGGGCTCAACACCACCCAGTGGGCCACTGTGGCAGCAGATGCAGGAGTTTCATTGATGATATTAACTGCAAAACACCATGATGGCTTCTGCCTCTGGCCTTCCAAGTACACTGACCATTCTGTCATTAGCAGCCCCTGGCAAGGTGGCAAGGGTGATGTGGTTCAAGACTTTGTCAATGCAGCCACTGCACAAGGAATTGATGTAGGGGTCTACCTTTCACCTTGGGATAGACATGACCCTAGATATGGCAATGATTTGCTCTACAACCAATACTACTTGGCTCAACTACAAGAGTTGCTCAAGAAATATCCAAATGTTAGAGAGATTTGGTTCGATGGAGCAAAGGGTGCCAATGCAAAAAATATGACGTATTACTTTTCAGATTGGTTTTCCATGGTGAAGGAGCTGCAGAGTTCCATCAACATCTTCTCTGATGCAGGTCCTGATGTTAGGTGGGTGGGAGATGAAACAGGTTCTGCAGGGTATACATGTTGGTCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCAGTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATGTGATGTATCCATTCGAAAAGGATGGTTTTGGCACAAATCAGAATCACCAAAAAAGCTAAGCGAGCTACTTGACATTTATTACAATTCGGTTGGGAGAAATTGTGTGTTACTTCTCAATGTGCCTCCTAATACAAGTGGCCTTATAACTGAAGTTGATGCCAATAGATTGAAAGAGTTTAGAAGTGCAATCAAGACAATTTTCCATCAGAATCTTGCTGAGGATTGTTTTGTTAAAGTTAGTAGCCAAAGAGGGGGTTTCGGGCCAGAAAAGATGCTAGACAGTGACCACTTGTGGTCATACTGGGCCCCAAGGGACGATGATGATGAAAAGGACCATTGGGTTGAAATTTGGGCCAAGGAAGGGAGATTGAGATTCAATGTGGTTAGAATACAAGAGGCAATTGGTCTTGGTCAAAGGATCAAACGGCATGAAATCTATGTGGATGGTAAATTGATCATCAAAGCCACAACGGTTGGTTATAAGAGGCTTCATAGGCTTGATGGGGGTGAAGTGCACGCTCGTGGTGTGAGGATAAGAATTAGAAAGGCAAGAGGAGTGCCTCTTATCTCTTCTATTGGCTTGCATTATGATCCTTTCTGGCACTCAAAGTTTACTGTATCCTGA

>Glyma10g38670.2   sequence type=CDS   gene model=Glyma10g38670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAGGCTATGGTGCTCTTCTCTCTCAATTACACTTTTATTCCAACAGCTCATCAGATTGTGCATTTCTTGGAGTGTGCAAACCCCAACACCCCCATTGCCAATCCTCCCTCTCCCAACATATTCCCAGTTGAAATGGCAACAAAGGGAGATCATAATGTTTTTCCATTTTGGTGTGAACACATTCAGTGACAGAGAATGGGGCACTGGCCAGGAAAACCCAGCAATCTTCAATCCAACGGGGCTCAACACCACCCAGTGGGCCACTGTGGCAGCAGATGCAGGAGTTTCATTGATGATATTAACTGCAAAACACCATGATGGCTTCTGCCTCTGGCCTTCCAAGTACACTGACCATTCTGTCATTAGCAGCCCCTGGCAAGGTGGCAAGGGTGATGTGGTTCAAGACTTTGTCAATGCAGCCACTGCACAAGGAATTGATGTAGGGGTCTACCTTTCACCTTGGGATAGACATGACCCTAGATATGGCAATGATTTGCTCTACAACCAATACTACTTGGCTCAACTACAAGAGTTGCTCAAGAAATATCCAAATGTTAGAGAGATTTGGTTCGATGGAGCAAAGGGTGCCAATGCAAAAAATATGACGTATTACTTTTCAGATTGGTTTTCCATGGTGAAGGAGCTGCAGAGTTCCATCAACATCTTCTCTGATGCAGGTCCTGATGTTAGGTGGGTGGGAGATGAAACAGGTTCTGCAGGGTATACATGTTGGTCTACCATTAATCGAACCTCTCTATCCATTGGAAGTCCAGACATCATTCAGTATATAAACACTGGTGATCCAAAAGGGACAGATTGGCTACCGGCGGAATGTGATGTATCCATTCGAAAAGGATGGTTTTGGCACAAATCAGAATCACCAAAAAAGCTAAGCGAGCTACTTGACATTTATTACAATTCGGTTGGGAGAAATTGTGTGTTACTTCTCAATGTGCCTCCTAATACAAGTGGCCTTATAACTGAAGTTGATGCCAATAGATTGAAAGAGTTTAGAAGTGCAATCAAGACAATTTTCCATCAGAATCTTGCTGAGGATTGTTTTGTTAAAGTTAGTAGCCAAAGAGGGGGTTTCGGGCCAGAAAAGATGCTAGACAGTGACCACTTGTGGTCATACTGGGCCCCAAGGGACGATGATGATGAAAAGGACCATTGGGTTGAAATTTGGGCCAAGGAAGGGAGATTGAGATTCAATGTGGTTAGAATACAAGAGGCAATTGGTCTTGGTCAAAGGATCAAACGGCATGAAATCTATGTGGATGGTAAATTGATCATCAAAGCCACAACGGTTGGTTATAAGAGGCTTCATAGGCTTGATGGGGGTGAAGTGCACGCTCGTGGTGTGAGGATAAGAATTAGAAAGGCAAGAGGAGTGCCTCTTATCTCTTCTATTGGCTTGCATTATGATCCTTTCTGGCACTCAAAGTTTACTGTATCCTGA

Predicted protein sequences of Glyma10g38670

Limit To All Plant Sequences

>Glyma10g38670.1   sequence type=predicted peptide   gene model=Glyma10g38670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRLWCSSLSITLLFQQLIRLCISWSVQTPTPPLPILPLPTYSQLKWQQREIIMFFHFGVNTFSDREWGTGQENPAIFNPTGLNTTQWATVAADAGVSLMILTAKHHDGFCLWPSKYTDHSVISSPWQGGKGDVVQDFVNAATAQGIDVGVYLSPWDRHDPRYGNDLLYNQYYLAQLQELLKKYPNVREIWFDGAKGANAKNMTYYFSDWFSMVKELQSSINIFSDAGPDVRWVGDETGSAGYTCWSTINRTSLSIGSPDIIQYINTGDPKGTDWLPAECDVSIRKGWFWHKSESPKKLSELLDIYYNSVGRNCVLLLNVPPNTSGLITEVDANRLKEFRSAIKTIFHQNLAEDCFVKVSSQRGGFGPEKMLDSDHLWSYWAPRDDDDEKDHWVEIWAKEGRLRFNVVRIQEAIGLGQRIKRHEIYVDGKLIIKATTVGYKRLHRLDGGEVHARGVRIRIRKARGVPLISSIGLHYDPFWHSKFTVS*

>Glyma10g38670.2   sequence type=predicted peptide   gene model=Glyma10g38670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRLWCSSLSITLLFQQLIRLCISWSVQTPTPPLPILPLPTYSQLKWQQREIIMFFHFGVNTFSDREWGTGQENPAIFNPTGLNTTQWATVAADAGVSLMILTAKHHDGFCLWPSKYTDHSVISSPWQGGKGDVVQDFVNAATAQGIDVGVYLSPWDRHDPRYGNDLLYNQYYLAQLQELLKKYPNVREIWFDGAKGANAKNMTYYFSDWFSMVKELQSSINIFSDAGPDVRWVGDETGSAGYTCWSTINRTSLSIGSPDIIQYINTGDPKGTDWLPAECDVSIRKGWFWHKSESPKKLSELLDIYYNSVGRNCVLLLNVPPNTSGLITEVDANRLKEFRSAIKTIFHQNLAEDCFVKVSSQRGGFGPEKMLDSDHLWSYWAPRDDDDEKDHWVEIWAKEGRLRFNVVRIQEAIGLGQRIKRHEIYVDGKLIIKATTVGYKRLHRLDGGEVHARGVRIRIRKARGVPLISSIGLHYDPFWHSKFTVS*

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