Glyma10g38580 - SoyBase

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Report for Sequence Feature Glyma10g38580

Feature Type:	gene_model
Chromosome:	Gm10
Start:	46358654
stop:	46363432
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g38580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G24260	AT	Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein \| chr1:8593790-8595862 REVERSE LENGTH=250	SoyBase	E_val: 3.00E-53	ISS
GO:0001708	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell fate specification	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0010093	GO-bp	Annotation by Michelle Graham. GO Biological Process: specification of floral organ identity	SoyBase	N/A	ISS
GO:0048440	GO-bp	Annotation by Michelle Graham. GO Biological Process: carpel development	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0048507	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem development	SoyBase	N/A	ISS
GO:0048833	GO-bp	Annotation by Michelle Graham. GO Biological Process: specification of floral organ number	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
KOG0014	KOG	MADS box transcription factor	JGI		ISS
PTHR11945	Panther	MADS BOX PROTEIN	JGI		ISS
PTHR11945:SF19	Panther	MADS BOX PROTEIN	JGI		ISS
PF00319	PFAM	SRF-type transcription factor (DNA-binding and dimerisation domain)	JGI		ISS
PF01486	PFAM	K-box region	JGI		ISS
UniRef100_I1LDW9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDW9_SOYBN	SoyBase	E_val: 3.00E-168	ISS
UniRef100_Q56NI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MADS box protein M3 n=1 Tax=Pisum sativum RepID=Q56NI6_PEA	SoyBase	E_val: 3.00E-95	ISS

Expression Patterns of Glyma10g38580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g38580 not represented in the dataset	Glyma10g38580 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g38580

Paralog	Evidence	Comments
Glyma20g29250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g38580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g240900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g38580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g38580

Limit To All Plant Sequences

>Glyma10g38580.2   sequence type=transcript   gene model=Glyma10g38580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAAAGGGTGGTGAATGTGAAAATAGAGGGAGCATGTGGAATGGTTGTGGTCACTATTATATATGTTGTCTCTTACGCTTTGCATGTGACTTTCTTTCTTTCTTTATATCCTTTATATATTAAGTATATGCTGCAATATATTTAATTAAAGAGAGAAGTAACATCAAGGTGCAGAGAGAGGAATTGAAGCATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGAAATGGTTTGCTCAAGAAAGCTTTCGAGCTATCTGTTCTATGCGATGCTGAAATCGCTCTCGTCATCTTCTCCAGCCGTGGCAAGCTTTTTCAGTATAGTAGCACTGAAATCATTGAGAAGTATCGTCAATGCTGCTTCAACATGTCTCAGACTGGCGATGTAGCTGAACATCAATCGGAGCAGTGCTTATACCAGGAGCTTTTGGTATTAAGAGTCAAGCATGAGTCACTCCAGCGGACTCAAAGGAATCTTCTGGGAGAAGAACTAGAGCCACTTAGCATGAAAGAATTGCATAGTTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTGACACAGAAGCTGGTATCACGAATTGACGAATTACATGGAAAGGTGCATAGCCTGGAGCAGGCTAACAAGCATTTGGAATCTCAGGAAAGAGGTAAATGTACCCAGATTTGTGAAGGTTCTCCTAATGGCCATATTTTGCAAGATAAACAAGTCAATCAGTTTGAATATGGAACAGCAGGTTCGTTTCGGCTTCAGCAAGAGCAAACTACTGCTTCCAAAGGAAAAGAAATAGAGACGATCGAGGACTGGTTGAGGCCAAAGCAGTCATAATATTAATATATTGCAACTTTGAATGTTCATAGAGTTAAAATATATTGTTCGTGGTCGTGTGTGTATCCATCAAATATATAGTTCCAAGCCTCAAAATTCTAGCTATATAGTACGTTAAGCGTCCATTGATGTAGCTTTGATTAATTTAGTGTATGTTTGATACAAGATATTTAATTTAGAGAATTAATAGTTTTATTTTTATCGATTTCCT

Coding sequences of Glyma10g38580

Limit To All Plant Sequences

>Glyma10g38580.1   sequence type=CDS   gene model=Glyma10g38580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGAAATGGTTTGCTCAAGAAAGCTTTCGAGCTATCTGTTCTATGCGATGCTGAAATCGCTCTCGTCATCTTCTCCAGCCGTGGCAAGCTTTTTCAGTATAGTAGCACTGACATTAACAGAATCATTGAGAAGTATCGTCAATGCTGCTTCAACATGTCTCAGACTGGCGATGTAGCTGAACATCAATCGGAGCAGTGCTTATACCAGGAGCTTTTGGTATTAAGAGTCAAGCATGAGTCACTCCAGCGGACTCAAAGGAATCTTCTGGGAGAAGAACTAGAGCCACTTAGCATGAAAGAATTGCATAGTTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTGACACAGAAGCTGGTATCACGAATTGACGAATTACATGGAAAGGTGCATAGCCTGGAGCAGGCTAACAAGCATTTGGAATCTCAGGAAAGAGGTAAATGTACCCAGATTTGTGAAGGTTCTCCTAATGGCCATATTTTGCAAGATAAACAAGTCAATCAGTTTGAATATGGAACAGCAGGTTCGTTTCGGCTTCAGCAAGAGCAAACTACTGCTTCCAAAGGAAAAGAAATAGAGACGATCGAGGACTGGTTGAGGCCAAAGCAGTCATAA

>Glyma10g38580.2   sequence type=CDS   gene model=Glyma10g38580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAAGAGGGAAGGTGGTTCTGGAGAGAATACAGAACAAGATCAATCGCCAAGTAACCTTCTCAAAGCGCAGAAATGGTTTGCTCAAGAAAGCTTTCGAGCTATCTGTTCTATGCGATGCTGAAATCGCTCTCGTCATCTTCTCCAGCCGTGGCAAGCTTTTTCAGTATAGTAGCACTGAAATCATTGAGAAGTATCGTCAATGCTGCTTCAACATGTCTCAGACTGGCGATGTAGCTGAACATCAATCGGAGCAGTGCTTATACCAGGAGCTTTTGGTATTAAGAGTCAAGCATGAGTCACTCCAGCGGACTCAAAGGAATCTTCTGGGAGAAGAACTAGAGCCACTTAGCATGAAAGAATTGCATAGTTTAGAGAAACAACTGGATAGAACGCTTGCACAAGCTCGGAAGCACCTGACACAGAAGCTGGTATCACGAATTGACGAATTACATGGAAAGGTGCATAGCCTGGAGCAGGCTAACAAGCATTTGGAATCTCAGGAAAGAGGTAAATGTACCCAGATTTGTGAAGGTTCTCCTAATGGCCATATTTTGCAAGATAAACAAGTCAATCAGTTTGAATATGGAACAGCAGGTTCGTTTCGGCTTCAGCAAGAGCAAACTACTGCTTCCAAAGGAAAAGAAATAGAGACGATCGAGGACTGGTTGAGGCCAAAGCAGTCATAA

Predicted protein sequences of Glyma10g38580

Limit To All Plant Sequences

>Glyma10g38580.1   sequence type=predicted peptide   gene model=Glyma10g38580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSSTDINRIIEKYRQCCFNMSQTGDVAEHQSEQCLYQELLVLRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLVSRIDELHGKVHSLEQANKHLESQERGKCTQICEGSPNGHILQDKQVNQFEYGTAGSFRLQQEQTTASKGKEIETIEDWLRPKQS*

>Glyma10g38580.2   sequence type=predicted peptide   gene model=Glyma10g38580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRGKVVLERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALVIFSSRGKLFQYSSTEIIEKYRQCCFNMSQTGDVAEHQSEQCLYQELLVLRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKHLTQKLVSRIDELHGKVHSLEQANKHLESQERGKCTQICEGSPNGHILQDKQVNQFEYGTAGSFRLQQEQTTASKGKEIETIEDWLRPKQS*

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