SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G12580 | AT | Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase-related kinase 1 | chr1:4283635-4285675 FORWARD LENGTH=522 | SoyBase | E_val: 2.00E-124 | ISS |
| GO:0006468 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein phosphorylation | SoyBase | N/A | ISS |
| GO:0046777 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004672 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein kinase activity | SoyBase | N/A | ISS |
| GO:0004674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| KOG0984 | KOG | Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 | JGI | ISS | |
| PTHR24349 | Panther | SERINE/THREONINE-PROTEIN KINASE | JGI | ISS | |
| PF00069 | PFAM | Protein kinase domain | JGI | ISS | |
| UniRef100_G7IC06 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Calcium-dependent protein kinase n=1 Tax=Medicago truncatula RepID=G7IC06_MEDTR | SoyBase | E_val: 2.00E-142 | ISS |
| UniRef100_I1LDV7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LDV7_SOYBN | SoyBase | E_val: 2.00E-155 | ISS |
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Glyma10g38463 not represented in the dataset |
Glyma10g38463 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g38463.1 sequence type=CDS gene model=Glyma10g38463 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGTTGCCAAGAGCAACAGCGGCAGTGGACATTCAACTTCATATAATTGTTACAAAGTAGCAAGCTTAACCGAAACCATATTAGACACGAATCAAATCTGTAATTTGAAAGATCAATACGTTCTTGGAGTGCAGTTGGGTTGGGGACAATTTGGTATAGAAGATAGGTTAGTTACTTCAGATGATTGGCAGAGTGTTAAACTCGAGATTGAGATAATGACTAGGTTATCTGGGCACCCAAATGTTGTAGATCTCAAGGCAGTTTATGAAGAAGAGGATTTTGTTCATCTAGTGATGGAGCTTTGTGCTGGAGGAGAGTTGTTTCATCTGTTAGAAAAGCACGGATGGTTTTCTGAATTTGAAGCCAGGGGTCTTTTTAGGCATCTCATGCAGATGGTTTTGTATTGTCATGAAAACGAGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTGGCAACTAGATCTTCCTCATCTCCAATTAAATTGGCAGACTTTGGGCTTGCAACCTACATAAAGCCCGGACAGAGTTTGCATGGGTTAGTTGGGAGTCCATTCTATATAGCTCCAGAGGTACTGGCAGGTGCATATAACCAGGCTGCTGATGTTTGGAGTGCAGGGGTTATTCTTTACATTCTACTGAGTGGGATGCCTCCATTTTGGGGAAAGACAAAGTCAGGAATATTTGAAGTTGCTAAGACTGCTAACCTGAGGTTCCCACCTGAGCCTTGGATTGCATTTCCGAATCAGCTAAGGATTTGA
>Glyma10g38463.1 sequence type=predicted peptide gene model=Glyma10g38463 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVAKSNSGSGHSTSYNCYKVASLTETILDTNQICNLKDQYVLGVQLGWGQFGIEDRLVTSDDWQSVKLEIEIMTRLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHLLEKHGWFSEFEARGLFRHLMQMVLYCHENEVVHRDLKPENILLATRSSSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGAYNQAADVWSAGVILYILLSGMPPFWGKTKSGIFEVAKTANLRFPPEPWIAFPNQLRI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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