Glyma10g38370 - SoyBase

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Report for Sequence Feature Glyma10g38370

Feature Type:	gene_model
Chromosome:	Gm10
Start:	46155650
stop:	46158669
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g38370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G52100	AT	Annotation by Michelle Graham. TAIR10: Dihydrodipicolinate reductase, bacterial/plant \| chr5:21170203-21172107 FORWARD LENGTH=298	SoyBase	E_val: 2.00E-159	ISS
GO:0009089	GO-bp	Annotation by Michelle Graham. GO Biological Process: lysine biosynthetic process via diaminopimelate	SoyBase	N/A	ISS
GO:0009773	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport in photosystem I	SoyBase	N/A	ISS
GO:0009965	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0010207	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem II assembly	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0030154	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell differentiation	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0008839	GO-mf	Annotation by Michelle Graham. GO Molecular Function: dihydrodipicolinate reductase activity	SoyBase	N/A	ISS
GO:0070402	GO-mf	Annotation by Michelle Graham. GO Molecular Function: NADPH binding	SoyBase	N/A	ISS
PTHR20836	Panther	DIHYDRODIPICOLINATE REDUCTASE	JGI		ISS
PF01113	PFAM	Dihydrodipicolinate reductase, N-terminus	JGI		ISS
PF05173	PFAM	Dihydrodipicolinate reductase, C-terminus	JGI		ISS
UniRef100_G7IAQ3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dihydrodipicolinate reductase n=1 Tax=Medicago truncatula RepID=G7IAQ3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1LDU7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDU7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g38370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g38370 not represented in the dataset	Glyma10g38370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g38370

Paralog	Evidence	Comments
Glyma20g29480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g38370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g238800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g38370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g38370

Limit To All Plant Sequences

>Glyma10g38370.2   sequence type=transcript   gene model=Glyma10g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACACGGTACACACACACACACCTTATCTATCAAAAGTCAAAACACTCTTATCTTCTTTTGGGCAGAGAGGCTTCACGCTTGAGTAGCCATGGCCTCCTTAAGCTGCCAGGTTCATTCCACCAACTTGTTGAATTCTAAGAATGCCAATAGCAGGAGGAAACGTTTAATTTCTTGCTCAGCACAGCCTACACAAAACAATATTAAGGTAGTGATTAATGGAGCAACCAAGGAAATAGGAAAGGCAGCAGTAGTGGCAGTGACTAAGGCCAGAGGAATGGAGGTAGCAGGAGCGGTGGATACTTGTCATATCGGGGAAGACATTGGAAAGATATGTGGCATGGAAGAGCTCCTTGAAATACCCATCATAAATGACCTTACTATGATTTTGGGCTCCATATCTCAGTCCAAGGCAGCAGGAGTTGTAGTCGATTTCACTGACCCTTCCTCTGTATATGACAACGTGAAACAGGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGAGAAGGCCAGCATGGGCGTCTTGGTTGCACCAACCCTTTCCATAGGATCAATATTATTGCAACAAGCTGCGATTTCAGCTTCTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAATGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTGGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGAATTTGGTATATGGCTTGGAGAAGTTCATATGAAAATAGTCCCCCTCTTCAATCTTCTTGTCAAAAACTTTAACTTGGTTGAACTCAAGGGACCTTGCACACCAGTTTGTTGGCAAACATCATGTAGAATGTTTGAAAAGAAGTAACAAAAGAAAAACACATCGTCCCCAAATTGCTTTTTAGCGGCCCAATTATTCAATCATGTTTAGCACCTGAACTGTGATTTGATGATTTTATTTTTTTTAGAATAAATTATTTTGTATATCCAATTAGAATTCAGATCTCATGATGTCTAGACAGTGTACCCAATTTAGTTTTCAAGACATACAACTCTCAAAGTATGTAGTTTAAGGCACAATCTCTTGTTAATTAAAGTTCACAGCTCATCTGACC

>Glyma10g38370.3   sequence type=transcript   gene model=Glyma10g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACACGGTACACACACACACACCTTATCTATCAAAAGTCAAAACACTCTTATCTTCTTTTGGGCAGAGAGGCTTCACGCTTGAGTAGCCATGGCCTCCTTAAGCTGCCAGGTTCATTCCACCAACTTGTTGAATTCTAAGAATGCCAATAGCAGGAGGAAACGTTTAATTTCTTGCTCAGCACAGCCTACACAAAACAATATTAAGGTAGTGATTAATGGAGCAACCAAGGAAATAGGAAAGGCAGCAGTAGTGGCAGTGACTAAGGCCAGAGGAATGGAGGTAGCAGGAGCGGTGGATACTTGTCATATCGGGGAAGACATTGGAAAGATTGTTTTTAATTCTTTCAGATATGTGGCATGGAAGAGCTCCTTGAAATACCCATCATAAATGACCTTACTATGATTTTGGGCTCCATATCTCAGTCCAAGGCAGCAGGAGTTGTAGTCGATTTCACTGACCCTTCCTCTGTATATGACAACGTGAAACAGGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGAGAAGGCCAGCATGGGCGTCTTGGTTGCACCAACCCTTTCCATAGGATCAATATTATTGCAACAAGCTGCGATTTCAGCTTCTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAATGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTGGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAGGTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGAATTTGGTATATGGCTTGGAGAAGTTCATATGAAAATAGTCCCCCTCTTCAATCTTCTTGTCAAAAACTTTAACTTGGTTGAACTCAAGGGACCTTGCACACCAGTTTGTTGGCAAACATCATGTAGAATGTTTGAAAAGAAGTAACAAAAGAAAAACACATCGTCCCCAAATTGCTTTTTAGCGGCCCAATTATTCAATCATGTTTAGCACCTGAACTGTGATTTGATGATTTTATTTTTTTTAGAATAAATTATTTTGTATATCCAATTAGAATTCAGATCTCATGATGTCTAGACAGTGTACCCAATTTAGTTTTCAAGACATACAACTCTCAAAGTATGTAGTTTAAGGCACAATCTCTTGTTAATTAAAGTTCACAGCTCATCTGACC

Coding sequences of Glyma10g38370

Limit To All Plant Sequences

>Glyma10g38370.1   sequence type=CDS   gene model=Glyma10g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCTTAAGCTGCCAGGTTCATTCCACCAACTTGTTGAATTCTAAGAATGCCAATAGCAGGAGGAAACGTTTAATTTCTTGCTCAGCACAGCCTACACAAAACAATATTAAGGTAGTGATTAATGGAGCAACCAAGGAAATAGGAAAGGCAGCAGTAGTGGCAGTGACTAAGGCCAGAGGAATGGAGGTAGCAGGAGCGGTGGATACTTGTCATATCGGGGAAGACATTGGAAAGATATGTGGCATGGAAGAGCTCCTTGAAATACCCATCATAAATGACCTTACTATGATTTTGGGCTCCATATCTCAGTCCAAGGCAGCAGGAGTTGTAGTCGATTTCACTGACCCTTCCTCTGTATATGACAACGTGAAACAGGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGAGAAGGCCAGCATGGGCGTCTTGGTTGCACCAACCCTTTCCATAGGATCAATATTATTGCAACAAGCTGCGATTTCAGCTTCTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAATGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTGGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAGGTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGAATTTGGTATATGGCTTGGAGAAGTTCATATGA

>Glyma10g38370.2   sequence type=CDS   gene model=Glyma10g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTCCTTAAGCTGCCAGGTTCATTCCACCAACTTGTTGAATTCTAAGAATGCCAATAGCAGGAGGAAACGTTTAATTTCTTGCTCAGCACAGCCTACACAAAACAATATTAAGGTAGTGATTAATGGAGCAACCAAGGAAATAGGAAAGGCAGCAGTAGTGGCAGTGACTAAGGCCAGAGGAATGGAGGTAGCAGGAGCGGTGGATACTTGTCATATCGGGGAAGACATTGGAAAGATATGTGGCATGGAAGAGCTCCTTGAAATACCCATCATAAATGACCTTACTATGATTTTGGGCTCCATATCTCAGTCCAAGGCAGCAGGAGTTGTAGTCGATTTCACTGACCCTTCCTCTGTATATGACAACGTGAAACAGGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGAGAAGGCCAGCATGGGCGTCTTGGTTGCACCAACCCTTTCCATAGGATCAATATTATTGCAACAAGCTGCGATTTCAGCTTCTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAATGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTGGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGAATTTGGTATATGGCTTGGAGAAGTTCATATGA

>Glyma10g38370.3   sequence type=CDS   gene model=Glyma10g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAGCTCCTTGAAATACCCATCATAAATGACCTTACTATGATTTTGGGCTCCATATCTCAGTCCAAGGCAGCAGGAGTTGTAGTCGATTTCACTGACCCTTCCTCTGTATATGACAACGTGAAACAGGCAACAGCATTTGGCATGAAAAGCATAGTTTACGTGCCCCGAATCAAATTAGACACGGTAGCTGCATTATCTGCATTCTGCGAGAAGGCCAGCATGGGCGTCTTGGTTGCACCAACCCTTTCCATAGGATCAATATTATTGCAACAAGCTGCGATTTCAGCTTCTTTCCATTACAGCAACGTCGAAATTGTGGAATCTAGGGCCAATGCAAATGATCTTCCATCAGCAGATGCAAACCAAATTGCCAACAATCTCTCCAACTTGGGTCAAATCTATAACAGAGAAGACCCTTCAACAGATGTCTTGGCAAGGGGTCAAGTCCTAGGAGATGGAATTCGTGTACACAGCATGGTCCTTCCAGGACTTCCTTCTAGTACAACAGTTCACTTCTCTGGTCCAGGAGAGGTGTACTCTATCAAGCATGATATCACAGATGTGAAGTGTCTCATGCCAGGCTTGCTATTAGCCATTAGAAAAGTAGTGCGCCTCAAGAATTTGGTATATGGCTTGGAGAAGTTCATATGA

Predicted protein sequences of Glyma10g38370

Limit To All Plant Sequences

>Glyma10g38370.1   sequence type=predicted peptide   gene model=Glyma10g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLSCQVHSTNLLNSKNANSRRKRLISCSAQPTQNNIKVVINGATKEIGKAAVVAVTKARGMEVAGAVDTCHIGEDIGKICGMEELLEIPIINDLTMILGSISQSKAAGVVVDFTDPSSVYDNVKQATAFGMKSIVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYSNVEIVESRANANDLPSADANQIANNLSNLGQIYNREDPSTDVLARGQVLGDGIRVHSMVLPGLPSSTTVHFSGPGEVYSIKHDITDVKCLMPGLLLAIRKVVRLKNLVYGLEKFI*

>Glyma10g38370.2   sequence type=predicted peptide   gene model=Glyma10g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLSCQVHSTNLLNSKNANSRRKRLISCSAQPTQNNIKVVINGATKEIGKAAVVAVTKARGMEVAGAVDTCHIGEDIGKICGMEELLEIPIINDLTMILGSISQSKAAGVVVDFTDPSSVYDNVKQATAFGMKSIVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYSNVEIVESRANANDLPSADANQIANNLSNLGQIYNREDPSTDVLARGQVLGDGIRVHSMVLPGLPSSTTVHFSGPGEHDITDVKCLMPGLLLAIRKVVRLKNLVYGLEKFI*

>Glyma10g38370.3   sequence type=predicted peptide   gene model=Glyma10g38370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEELLEIPIINDLTMILGSISQSKAAGVVVDFTDPSSVYDNVKQATAFGMKSIVYVPRIKLDTVAALSAFCEKASMGVLVAPTLSIGSILLQQAAISASFHYSNVEIVESRANANDLPSADANQIANNLSNLGQIYNREDPSTDVLARGQVLGDGIRVHSMVLPGLPSSTTVHFSGPGEVYSIKHDITDVKCLMPGLLLAIRKVVRLKNLVYGLEKFI*

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