Glyma10g38310 - SoyBase

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Report for Sequence Feature Glyma10g38310

Feature Type:	gene_model
Chromosome:	Gm10
Start:	46118444
stop:	46123432
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g38310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62070	AT	Annotation by Michelle Graham. TAIR10: IQ-domain 23 \| chr5:24930057-24932451 REVERSE LENGTH=403	SoyBase	E_val: 8.00E-56	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
PTHR10699	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR10699:SF9	Panther	CALMODULIN BINDING	JGI		ISS
PF00612	PFAM	IQ calmodulin-binding motif	JGI		ISS
UniRef100_Q9FIT1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g62070/mtg10_90 n=1 Tax=Arabidopsis thaliana RepID=Q9FIT1_ARATH	SoyBase	E_val: 4.00E-53	ISS
UniRef100_UPI000233DE64	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DE64 related cluster n=1 Tax=unknown RepID=UPI000233DE64	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g38310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g38310

Paralog	Evidence	Comments
Glyma20g29550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g38310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g238300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g38310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g38310

Limit To All Plant Sequences

>Glyma10g38310.2   sequence type=CDS   gene model=Glyma10g38310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCTTTCTCCGGCGACTTTTCGGCGCCAAAAAACCCTCCGATTGCAAATCCGGCAAGAAAAGATGGACCTTCCTCAAACACACCGTCAGAAACAAGTCACTCCCGCCGCCACCGATACCCCCCGCACTCAACACTCACTTTGATTCCTCAACTCCCTTGGATGCCAACAAGCATGCAATCGCCGTCGCCGCCGCCACCGCCGCAGTAGCAGAAGCTGCTCTCGCCGCCGCCCACGCCGCTGCCGAGGTAGTCAGACTCACAAGCGGCGGCGTCGCCGCCACAAGTACCAGCTCCAGAACCGCTGTCACGGCGGCGCGTGTTGGCAACCTTGAGACCGCCGCCGTTAGGATACAATCGGCGTTCCGTGGTTACTTGGCAAGGAGGGCATTGAGAGCGCTTAAAGCATTGGTGAAGTTGCAAGCATTGGTTAGGGGCCACATTGTGAGAAAGCAAAGTGCAGATATGCTGAGGCGCATGCAAACATTGGTGCGACTTCAGGCCCAGGCACGTGCAAGCCGTGCGCACTTGTCAGATAATACGCCTTCTTTCAACTTCAACTCTTCCCTACTTTCTCACTATCCTGTCCCTGAAGAATATGAGCACCCACCTCGTGGCTTCAGTACAAAATTTGATGGATCTTCTATCCTTAAGAGATGCAGTTCCAATGCCAATTCTAGGAATGTTGACTCGGAACGAGTCGGGTTCGATTCCAACTGGTTAAACCGTTGGATGGAATTAGATAACAAGTGTAGCCAAACTGGAGATGCTTCATTGAAAAATAATGGACGCCCTGATGATGATAAAAGTGACAAGATTCTCGAAGTGGATACTTGGAGGCCACACTTCAAGTCCCACCACAACAGTAGCAGCTCCTCTCAAGCAGCACATTATTATCTGAATGCTGATTACAATAATGAGAACTTTGCGGCGGCACACGAGTCTCCATCAAAACGTTCAGCAAAGGCTCTAAACCAAAGCTTCTCATCAAGGGAGGTGTTGCAGCTAAGATCATTGAAGTTTCACAAAGGAAAAGAAGAAGCAAGTTCAAGAACTGCTGACAATAGTCCACAAGCATTTTCTGCCAATTCTAGAAACGGAAGTGGTGCAAGGAGAGGAGGAGGACCCTTTACACCTACTAGGAGTGAGTGTTCGTTGGGTTTCTTCAGTGGCTACACGGGTCACCCCAATTACATGGCAAACACTGAATCTTTTAGAGCTAAGGTTAGATCACAAAGTGCACCTAGACAAAGGCTGGAGTTTGACAGATACGGTTCCACTAGGAGGCCTGTTCCTTTGGTGGGGCCTAATTCAGACCATGATTCAGATTTAAGGAACAAAGTCTTACCTCCCTTTAACCAAACGAACAGAATTGGGAGTAGCAATTTAAGGTGA

Predicted protein sequences of Glyma10g38310

Limit To All Plant Sequences

>Glyma10g38310.2   sequence type=predicted peptide   gene model=Glyma10g38310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFLRRLFGAKKPSDCKSGKKRWTFLKHTVRNKSLPPPPIPPALNTHFDSSTPLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSGGVAATSTSSRTAVTAARVGNLETAAVRIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQSADMLRRMQTLVRLQAQARASRAHLSDNTPSFNFNSSLLSHYPVPEEYEHPPRGFSTKFDGSSILKRCSSNANSRNVDSERVGFDSNWLNRWMELDNKCSQTGDASLKNNGRPDDDKSDKILEVDTWRPHFKSHHNSSSSSQAAHYYLNADYNNENFAAAHESPSKRSAKALNQSFSSREVLQLRSLKFHKGKEEASSRTADNSPQAFSANSRNGSGARRGGGPFTPTRSECSLGFFSGYTGHPNYMANTESFRAKVRSQSAPRQRLEFDRYGSTRRPVPLVGPNSDHDSDLRNKVLPPFNQTNRIGSSNLR*

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