SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52240 | AT | Annotation by Michelle Graham. TAIR10: membrane steroid binding protein 1 | chr5:21213121-21214557 FORWARD LENGTH=220 | SoyBase | E_val: 1.00E-93 | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0030308 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cell growth | SoyBase | N/A | ISS |
| GO:0048523 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cellular process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0005496 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: steroid binding | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| KOG1110 | KOG | Putative steroid membrane receptor Hpr6.6/25-Dx | JGI | ISS | |
| PTHR10281 | Panther | MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED | JGI | ISS | |
| PTHR10281:SF26 | Panther | MEMBRANE STEROID BINDING PROTEIN | JGI | ISS | |
| PF00173 | PFAM | Cytochrome b5-like Heme/Steroid binding domain | JGI | ISS | |
| UniRef100_G7KLJ7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Membrane steroid-binding protein n=1 Tax=Medicago truncatula RepID=G7KLJ7_MEDTR | SoyBase | E_val: 3.00E-110 | ISS |
| UniRef100_I1LDS8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDS8_SOYBN | SoyBase | E_val: 2.00E-170 | ISS |
|
Glyma10g38150 not represented in the dataset |
Glyma10g38150 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g29660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g237000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g38150.1 sequence type=CDS gene model=Glyma10g38150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGTGCAACTGTGGGAAACCCTGAAGGAGGCCATCGTGGCCTACACCGGCTTCTCTCCTTCCACCTTCTTCACGGTGCTGGCGCTTCTTTTTGCCGCTTACTACGTCGTCACGGGTCTTTTTGGTTCCTCCGACGACCACCACCACCGCCACCGCCACGCCCAGGAGGAGGAGATGCCGCCTCTGCGCCCCCCGGTTCAGCTCGGCGAGATCACGGCGGAGGAGCTCAAGGCCTACGACGGCACCGATCCCGAGAAGCCCTTGCTCATGGCCATCAAGGCCCAGATCTATGATGTCTCCCAGAGCAGGATGTTTTATGGACCTGGTGGACCTTATGCCCTATTTGCTGGCAAGGATGCTAGCAGAGCCTTAGCGAAGATGTCTTTTGAAGAGAAAGATCTGACTGGGGATATTTCTGGTCTTGGCCCATTCGAGATTGATGCCTTACAAGACTGGGAATATAAGTTTATGAGCAAGTATGTAAAGGTTGGAACTGTTAAAAGTGAAGAAGTTCCAGTAACTGAACCAGAGTCCACTGGTGAACCATCAGAATCTACTTCTCGTGATATTGATGCTGCTGCTGCTGCTGCCAAGCATACTGAGGATGGCAAATCAGAAACTCCTGCGGTTAAAAGCGATGAAACCCCTTCAAATGTTGATGCCGATATACCCCTGCGGAAAATGAAGAAAAAAAGAACTTCATAG
>Glyma10g38150.1 sequence type=predicted peptide gene model=Glyma10g38150 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAVQLWETLKEAIVAYTGFSPSTFFTVLALLFAAYYVVTGLFGSSDDHHHRHRHAQEEEMPPLRPPVQLGEITAEELKAYDGTDPEKPLLMAIKAQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEEKDLTGDISGLGPFEIDALQDWEYKFMSKYVKVGTVKSEEVPVTEPESTGEPSESTSRDIDAAAAAAKHTEDGKSETPAVKSDETPSNVDADIPLRKMKKKRTS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
