Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g37950): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g37950): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Feature Type: gene_model Chromosome: Gm10 Start: 45873221 stop: 45874359 Source: JGI Version: Wm82.a1.v1.1 High confidence: yes

A newer version of this gene model can be found here:

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48990	AT	Annotation by Michelle Graham. TAIR10: AMP-dependent synthetase and ligase family protein | chr3:18159031-18161294 REVERSE LENGTH=514	SoyBase	E_val: 2.00E-44	ISS
GO:0010030	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of seed germination	SoyBase	N/A	ISS
GO:0010167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to nitrate	SoyBase	N/A	ISS
GO:0010214	GO-bp	Annotation by Michelle Graham. GO Biological Process: seed coat development	SoyBase	N/A	ISS
GO:0015706	GO-bp	Annotation by Michelle Graham. GO Biological Process: nitrate transport	SoyBase	N/A	ISS
GO:0033611	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxalate catabolic process	SoyBase	N/A	ISS
GO:0046482	GO-bp	Annotation by Michelle Graham. GO Biological Process: para-aminobenzoic acid metabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0050832	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to fungus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0016208	GO-mf	Annotation by Michelle Graham. GO Molecular Function: AMP binding	SoyBase	N/A	ISS
GO:0050203	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxalate-CoA ligase activity	SoyBase	N/A	ISS
PTHR24095	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24095:SF49	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_B9R9A8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9R9A8_RICCO	SoyBase	E_val: 7.00E-49	ISS
UniRef100_I1LDR1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1LDR1_SOYBN	SoyBase	E_val: 2.00E-62	ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Paralog	Evidence	Comments
Glyma20g29850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding Name	Annotation Version	Evidence	Comments

Schmutz et al. 2010   Genome sequence of the palaeopolyploid soybean   Nature 2010, 463:178-183