Glyma10g37870 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g37870): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g37870): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma10g37870

Feature Type:	gene_model
Chromosome:	Gm10
Start:	45760301
stop:	45764644
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g37870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G33410	AT	Annotation by Michelle Graham. TAIR10: SIGNAL PEPTIDE PEPTIDASE-LIKE 1 \| chr4:16081640-16083119 FORWARD LENGTH=372	SoyBase	E_val: 0	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005802	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG2443	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12174	Panther	SIGNAL PEPTIDE PEPTIDASE	JGI		ISS
PTHR12174:SF22	Panther	SIGNAL PEPTIDE PEPTIDASE-LIKE 3	JGI		ISS
PF04258	PFAM	Signal peptide peptidase	JGI		ISS
UniRef100_C6T8T0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8T0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_G7IAL9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Signal peptide peptidase-like protein n=1 Tax=Medicago truncatula RepID=G7IAL9_MEDTR	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g37870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g37870 not represented in the dataset	Glyma10g37870 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g37870

Paralog	Evidence	Comments
Glyma20g29950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g37870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g234200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g37870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g37870

Limit To All Plant Sequences

>Glyma10g37870.2   sequence type=transcript   gene model=Glyma10g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGGTCAGTCTTTCCATTAAACCCTAATTTCCCAATCCCCTTTTCCTCCTTCTTCCACAACACACTTCGCTTCAATCTCTGTGGTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGCAACTTTGGTTGCAGAGTCATAAGTGTTAAGTTGTGTATGCATGAAAGTGGGCTTGAGTTAATTGTGCCTCTTGTATGATGGAATCCCTTTGGAAACTGTTGTACTTGCTAGAGCCTGCGCCTGTCACACTTATCATTACAGCTGTGGCTGTGACATTTGGCGCAGCATTTCGAGCTCTAAACTATGGGAAAGAAATGGAGCATAATCGTGACTTATGTGAAGCATCGATTACATTGGATAGGTCACAGGCATTGATGATCCCGGTGATGAGCTCTTTTAGCTTGCTTTTGATGTTCTACTTGTTCTCATCTGTCTCGCAGCTTCTCACTGCATTCACTGCTGTTGCTTCCGCATCCTCTCTTTTCTTCTGCTTGTCTCCTTATGTTGCCTATTTGAAGGCACAGTTTGGTTTAGCGGATCCATTTGTTTCACGCTGTTGCTCGAAATCTTTTACACGACTCCAAGCAATACTATTGTTAGTGTGCTCTTTCACTGTGGCTGCTTGGCTTGTTTCTGGTCATTGGATACTGAACAATTTGTTAGGCATATCTATATGCATCGCGTTTGTAAGCCATGTGCGTCTTCCAAACATCAAAATTTGCGCTATGCTCCTTGTTTGTCTATTCGTGTATGACATTTTTTGGGTTTTCTTCTCTGAAAGATTTTTTGGTGCAAATGTCATGGTATCAGTGGCAACACAGCAAGCATCAAATCCTGTGCACACCGTTGCCAATAGTATCGGTCTTCCTGGGTTGCAACTGATAACTAAGAAATTAGAGCTGCCTGTAAAGATTGTTTTTCCAAGAAATTTGTTGGGTGGTGTTGTTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATGGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAATTACATTCCTCAAAGGGGCACAAATACATATGGTATGCGCTACCCGGGTATGCCATTGGCCTGGTAACTGCTTTGGCAGCTGGTGTCTTGACCCACTCACCTCAACCTGCACTTCTTTATCTGGTGCCTTCTACTTTGGGACCTGTAGTTGTGATATCTTGGATGAAAAGGGAGCTATTTGAGTTGTGGGAAGGAAACACCCCAAATCTCAATGATAAAGATCGCGAAATAGAAGTTTAGTCTAGGGACTGGTGGTTTATAGCCAAATAGAAAGTTGTAAATTTACTGAGAGTCTTTAATCGTCAGACTCACCAAGAAAATTTACATTAATTGTTCACTTTGCTGTCTTGATGTTTCTATTTATATACCATACATAAATTGGGGGAAAGAAGTTTATAAAAACTCTCCTTCGTGAT

>Glyma10g37870.3   sequence type=transcript   gene model=Glyma10g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCCTCATTGAGCACACAGAAAGCAAAGTGTCTCTCTAACCTCTGCAAAAGTCCAAGGTTGCACGGTTTTAACTGCTTAGGCTTTTGTCTTCAAAATTAAAACTGTGCAACTTTGGTTGCAGAGTCATAAGTGTTAAGTTGTGTATGCATGAAAGTGGGCTTGAGTTAATTGTGCCTCTTGTATGATGGAATCCCTTTGGAAACTGTTGTACTTGCTAGAGCCTGCGCCTGTCACACTTATCATTACAGCTGTGGCTGTGACATTTGGCGCAGCATTTCGAGCTCTAAACTATGGGAAAGAAATGGAGCATAATCGTGACTTATGTGAAGCATCGATTACATTGGATAGGTCACAGGCATTGATGATCCCGGTGATGAGCTCTTTTAGCTTGCTTTTGATGTTCTACTTGTTCTCATCTGTCTCGCAGCTTCTCACTGCATTCACTGCTGTTGCTTCCGCATCCTCTCTTTTCTTCTGCTTGTCTCCTTATGTTGCCTATTTGAAGGCACAGTTTGGTTTAGCGGATCCATTTGTTTCACGCTGTTGCTCGAAATCTTTTACACGACTCCAAGCAATACTATTGTTAGTGTGCTCTTTCACTGTGGCTGCTTGGCTTGTTTCTGGTCATTGGATACTGAACAATTTGTTAGGCATATCTATATGCATCGCGTTTGTAAGCCATGTGCGTCTTCCAAACATCAAAATTTGCGCTATGCTCCTTGTTTGTCTATTCGTGTATGACATTTTTTGGGTTTTCTTCTCTGAAAGATTTTTTGGTGCAAATGTCATGGTATCAGTGGCAACACAGCAAGCATCAAATCCTGTGCACACCGTTGCCAATAGTATCGGTCTTCCTGGGTTGCAACTGATAACTAAGAAATTAGAGCTGCCTGTAAAGATTGTTTTTCCAAGAAATTTGTTGGGTGGTGTTGTTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAATTACATTCCTCAAAGGGGCACAAATACATATGGTATGCGCTACCCGGGTATGCCATTGGCCTGGTAACTGCTTTGGCAGCTGGTGTCTTGACCCACTCACCTCAACCTGCACTTCTTTATCTGGTGCCTTCTACTTTGGGACCTGTAGTTGTGATATCTTGGATGAAAAGGGAGCTATTTGAGTTGTGGGAAGGAAACACCCCAAATCTCAATGATAAAGATCGCGAAATAGAAGTTTAGTCTAGGGACTGGTGGTTTATAGCCAAATAGAAAGTTGTAAATTTACTGAGAGTCTTTAATCGTCAGACTCACCAAGAAAATTTACATTAATTGTTCACTTTGCTGTCTTGATGTTTCTATTTATATACCATACATAAATTGGGGGAAAGAAGTTTATAAAAACTCTCCTTCGTGAT

Coding sequences of Glyma10g37870

Limit To All Plant Sequences

>Glyma10g37870.1   sequence type=CDS   gene model=Glyma10g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAATCCCTTTGGAAACTGTTGTACTTGCTAGAGCCTGCGCCTGTCACACTTATCATTACAGCTGTGGCTGTGACATTTGGCGCAGCATTTCGAGCTCTAAACTATGGGAAAGAAATGGAGCATAATCGTGACTTATGTGAAGCATCGATTACATTGGATAGGTCACAGGCATTGATGATCCCGGTGATGAGCTCTTTTAGCTTGCTTTTGATGTTCTACTTGTTCTCATCTGTCTCGCAGCTTCTCACTGCATTCACTGCTGTTGCTTCCGCATCCTCTCTTTTCTTCTGCTTGTCTCCTTATGTTGCCTATTTGAAGGCACAGTTTGGTTTAGCGGATCCATTTGTTTCACGCTGTTGCTCGAAATCTTTTACACGACTCCAAGCAATACTATTGTTAGTGTGCTCTTTCACTGTGGCTGCTTGGCTTGTTTCTGGTCATTGGATACTGAACAATTTGTTAGGCATATCTATATGCATCGCGTTTGTAAGCCATGTGCGTCTTCCAAACATCAAAATTTGCGCTATGCTCCTTGTTTGTCTATTCGTGTATGACATTTTTTGGGTTTTCTTCTCTGAAAGATTTTTTGGTGCAAATGTCATGGTATCAGTGGCAACACAGCAAGCATCAAATCCTGTGCACACCGTTGCCAATAGTATCGGTCTTCCTGGGTTGCAACTGATAACTAAGAAATTAGAGCTGCCTGTAAAGATTGTTTTTCCAAGAAATTTGTTGGGTGGTGTTGTTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATGGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAATTACATTCCTCAAAGGGGCACAAATACATATGGTATGCGCTACCCGGGTATGCCATTGGCCTGGTAACTGCTTTGGCAGCTGGTGTCTTGACCCACTCACCTCAACCTGCACTTCTTTATCTGGTGCCTTCTACTTTGGGACCTGTAGTTGTGATATCTTGGATGAAAAGGGAGCTATTTGAGTTGTGGGAAGGAAACACCCCAAATCTCAATGATAAAGATCGCGAAATAGAAGTTTAG

>Glyma10g37870.2   sequence type=CDS   gene model=Glyma10g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAATCCCTTTGGAAACTGTTGTACTTGCTAGAGCCTGCGCCTGTCACACTTATCATTACAGCTGTGGCTGTGACATTTGGCGCAGCATTTCGAGCTCTAAACTATGGGAAAGAAATGGAGCATAATCGTGACTTATGTGAAGCATCGATTACATTGGATAGGTCACAGGCATTGATGATCCCGGTGATGAGCTCTTTTAGCTTGCTTTTGATGTTCTACTTGTTCTCATCTGTCTCGCAGCTTCTCACTGCATTCACTGCTGTTGCTTCCGCATCCTCTCTTTTCTTCTGCTTGTCTCCTTATGTTGCCTATTTGAAGGCACAGTTTGGTTTAGCGGATCCATTTGTTTCACGCTGTTGCTCGAAATCTTTTACACGACTCCAAGCAATACTATTGTTAGTGTGCTCTTTCACTGTGGCTGCTTGGCTTGTTTCTGGTCATTGGATACTGAACAATTTGTTAGGCATATCTATATGCATCGCGTTTGTAAGCCATGTGCGTCTTCCAAACATCAAAATTTGCGCTATGCTCCTTGTTTGTCTATTCGTGTATGACATTTTTTGGGTTTTCTTCTCTGAAAGATTTTTTGGTGCAAATGTCATGGTATCAGTGGCAACACAGCAAGCATCAAATCCTGTGCACACCGTTGCCAATAGTATCGGTCTTCCTGGGTTGCAACTGATAACTAAGAAATTAGAGCTGCCTGTAAAGATTGTTTTTCCAAGAAATTTGTTGGGTGGTGTTGTTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATGGCTATCCCAGGCATGCTACTGGCTTTAGTCCTCTGCTTTGATTATCGCAAGAGCAGGGATACAGTAAATCTCTTAGAATTACATTCCTCAAAGGGGCACAAATACATATGGTATGCGCTACCCGGGTATGCCATTGGCCTGGTAACTGCTTTGGCAGCTGGTGTCTTGACCCACTCACCTCAACCTGCACTTCTTTATCTGGTGCCTTCTACTTTGGGACCTGTAGTTGTGATATCTTGGATGAAAAGGGAGCTATTTGAGTTGTGGGAAGGAAACACCCCAAATCTCAATGATAAAGATCGCGAAATAGAAGTTTAG

>Glyma10g37870.3   sequence type=CDS   gene model=Glyma10g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAATCCCTTTGGAAACTGTTGTACTTGCTAGAGCCTGCGCCTGTCACACTTATCATTACAGCTGTGGCTGTGACATTTGGCGCAGCATTTCGAGCTCTAAACTATGGGAAAGAAATGGAGCATAATCGTGACTTATGTGAAGCATCGATTACATTGGATAGGTCACAGGCATTGATGATCCCGGTGATGAGCTCTTTTAGCTTGCTTTTGATGTTCTACTTGTTCTCATCTGTCTCGCAGCTTCTCACTGCATTCACTGCTGTTGCTTCCGCATCCTCTCTTTTCTTCTGCTTGTCTCCTTATGTTGCCTATTTGAAGGCACAGTTTGGTTTAGCGGATCCATTTGTTTCACGCTGTTGCTCGAAATCTTTTACACGACTCCAAGCAATACTATTGTTAGTGTGCTCTTTCACTGTGGCTGCTTGGCTTGTTTCTGGTCATTGGATACTGAACAATTTGTTAGGCATATCTATATGCATCGCGTTTGTAAGCCATGTGCGTCTTCCAAACATCAAAATTTGCGCTATGCTCCTTGTTTGTCTATTCGTGTATGACATTTTTTGGGTTTTCTTCTCTGAAAGATTTTTTGGTGCAAATGTCATGGTATCAGTGGCAACACAGCAAGCATCAAATCCTGTGCACACCGTTGCCAATAGTATCGGTCTTCCTGGGTTGCAACTGATAACTAAGAAATTAGAGCTGCCTGTAAAGATTGTTTTTCCAAGAAATTTGTTGGGTGGTGTTGTTCCTGGAGAGAATGCGGCAGACTTCATGATGCTTGGTTTAGGAGACATGGCATGCTACTGGCTTTAG

Predicted protein sequences of Glyma10g37870

Limit To All Plant Sequences

>Glyma10g37870.1   sequence type=predicted peptide   gene model=Glyma10g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESLWKLLYLLEPAPVTLIITAVAVTFGAAFRALNYGKEMEHNRDLCEASITLDRSQALMIPVMSSFSLLLMFYLFSSVSQLLTAFTAVASASSLFFCLSPYVAYLKAQFGLADPFVSRCCSKSFTRLQAILLLVCSFTVAAWLVSGHWILNNLLGISICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSIGLPGLQLITKKLELPVKIVFPRNLLGGVVPGENAADFMMLGLGDMAIPGMLLALVLCFDYRKSRDTVNLLELHSSKGHKYIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVVVISWMKRELFELWEGNTPNLNDKDREIEV*

>Glyma10g37870.2   sequence type=predicted peptide   gene model=Glyma10g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESLWKLLYLLEPAPVTLIITAVAVTFGAAFRALNYGKEMEHNRDLCEASITLDRSQALMIPVMSSFSLLLMFYLFSSVSQLLTAFTAVASASSLFFCLSPYVAYLKAQFGLADPFVSRCCSKSFTRLQAILLLVCSFTVAAWLVSGHWILNNLLGISICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSIGLPGLQLITKKLELPVKIVFPRNLLGGVVPGENAADFMMLGLGDMAIPGMLLALVLCFDYRKSRDTVNLLELHSSKGHKYIWYALPGYAIGLVTALAAGVLTHSPQPALLYLVPSTLGPVVVISWMKRELFELWEGNTPNLNDKDREIEV*

>Glyma10g37870.3   sequence type=predicted peptide   gene model=Glyma10g37870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMESLWKLLYLLEPAPVTLIITAVAVTFGAAFRALNYGKEMEHNRDLCEASITLDRSQALMIPVMSSFSLLLMFYLFSSVSQLLTAFTAVASASSLFFCLSPYVAYLKAQFGLADPFVSRCCSKSFTRLQAILLLVCSFTVAAWLVSGHWILNNLLGISICIAFVSHVRLPNIKICAMLLVCLFVYDIFWVFFSERFFGANVMVSVATQQASNPVHTVANSIGLPGLQLITKKLELPVKIVFPRNLLGGVVPGENAADFMMLGLGDMACYWL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain