Glyma10g37690 - SoyBase

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Report for Sequence Feature Glyma10g37690

Feature Type:	gene_model
Chromosome:	Gm10
Start:	45616214
stop:	45620391
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g37690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G52440	AT	Annotation by Michelle Graham. TAIR10: Bacterial sec-independent translocation protein mttA/Hcf106 \| chr5:21286896-21288613 FORWARD LENGTH=260	SoyBase	E_val: 4.00E-64	ISS
GO:0009306	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein secretion	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0045038	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0033281	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: TAT protein transport complex	SoyBase	N/A	ISS
GO:0008565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein transporter activity	SoyBase	N/A	ISS
GO:0009977	GO-mf	Annotation by Michelle Graham. GO Molecular Function: proton motive force dependent protein transmembrane transporter activity	SoyBase	N/A	ISS
PF02416	PFAM	mttA/Hcf106 family	JGI		ISS
UniRef100_C6TE98	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TE98_SOYBN	SoyBase	E_val: 2.00E-173	ISS
UniRef100_Q94G16	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sec-independent protein translocase protein TATB, chloroplastic n=1 Tax=Pisum sativum RepID=TATB_PEA	SoyBase	E_val: 2.00E-109	ISS

Expression Patterns of Glyma10g37690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g37690 not represented in the dataset	Glyma10g37690 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g37690

Paralog	Evidence	Comments
Glyma20g30120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g37690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g232400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g37690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g37690

Limit To All Plant Sequences

>Glyma10g37690.2   sequence type=transcript   gene model=Glyma10g37690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTGGAATATTTTTCACGTTTGATTTGACCATTAAATTGGAGATAGGATTTTTGTGCGGGCCAAGAAAGATACATTCATCGTTCAACAATCTTCAAACAAACAAAAAATAAAGTGTCTTAGAAATGACACGATCCTTGGCAATGGCTTCTTCATCAATGTTATGTCCGAAGCTGGGGAGTTGTGCAGTGTCACATACAAAGTTCCAAGCTTTTCATCTCTCTTCAATGTTCTCTCCACTGGGTCGAGGCCTTGTCTCACCTTGGAGTGGTTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATACCACACCAACTTCATCATCCACTTCCACTGTTGACCCTAATGGCACGCCAGATCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAACACCTTCCAAGGAAGGTGACAATGAGCCTCAAATCCAGCCTTCTGGTTAGTCTTTTTTGTGGAACATAGGCACTTTTTTTTTTTTCTCCCTCTTTCCACCCTCTTTGTTCTTCACCTTTCTTTGATATGTCAACAGCTGAGGAAACAGCTACTACTGTACCTCCACCTCAGAAGCCAGAAAGTGAGACGTAAACTCTGGGTTCATAAGCATAGGGAGTTAAAATAATTTGTCCAATTATCGCTTCAATGCCCGGAAGTGGGCAGTACTATTGGCACAAGAGATGAGAAGGGTCAGGCAATTTTGTTACCAGCTAGTCATTAGAATCATGTAAAATGTAAAGAACAAAACCATTAACGATTAGTATGTTTCCAAATTAATTGTAGTTATATTTGTCATTGATCATTGGATATCAGAACCGTAGTGTAAGCGTTAGCAATATTTTGTTTGAGTTATGCTTTGGTAATAAACCCGACTCCTTAATAGCGGTTCTGTTTTCAAACTGAGTCATTCTACTCAAACTTAGTATTGCTTTCGATAAATAAAAAAATTGAAAATTTTAACTTATCTTCA

Coding sequences of Glyma10g37690

Limit To All Plant Sequences

>Glyma10g37690.1   sequence type=CDS   gene model=Glyma10g37690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACGATCCTTGGCAATGGCTTCTTCATCAATGTTATGTCCGAAGCTGGGGAGTTGTGCAGTGTCACATACAAAGTTCCAAGCTTTTCATCTCTCTTCAATGTTCTCTCCACTGGGTCGAGGCCTTGTCTCACCTTGGAGTGGTTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATACCACACCAACTTCATCATCCACTTCCACTGTTGACCCTAATGGCACGCCAGATCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAACACCTTCCAAGGAAGGTGACAATGAGCCTCAAATCCAGCCTTCTGCTGAGGAAACAGCTACTACTGTACCTCCACCTCAGAAGCCAGAAAGTGAGACGTAA

>Glyma10g37690.2   sequence type=CDS   gene model=Glyma10g37690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACACGATCCTTGGCAATGGCTTCTTCATCAATGTTATGTCCGAAGCTGGGGAGTTGTGCAGTGTCACATACAAAGTTCCAAGCTTTTCATCTCTCTTCAATGTTCTCTCCACTGGGTCGAGGCCTTGTCTCACCTTGGAGTGGTTTAAAGCATCTGGGTATCTCAGCTAAAGCAAAGCCTCTTATTCACATAGATAGAAAGGGTGGGTGTAAGGGTAAGGTGGTTTATGCTTCTCTCTTTGGGGTTGGAGCTCCTGAGGCTTTGGTAATTGGGGTCGTTGCTTTGTTGGTTTTTGGCCCTAAAGGTCTTGCTGAGGTTGCTAGAAATCTGGGAAAAACATTGCGTACATTTCAACCCACCATTAAAGAGCTTCAGGATGTTTCAAGGGAATTTAAGAGTACTCTTGAACGGGAGATTGGTCTTGATGACAATTTAAGTCCAACCCAGAACACATACAATTCCAACATACGCAATACCACACCAACTTCATCATCCACTTCCACTGTTGACCCTAATGGCACGCCAGATCCTACTAAAGCATACAGCTCTGAGGAGTATCTTAAGATTACAGAGGAGCAGCTGAAGGCATCTGCTGCACAACAGCAGGGGCAAACACCTTCCAAGGAAGGTGACAATGAGCCTCAAATCCAGCCTTCTGGTTAG

Predicted protein sequences of Glyma10g37690

Limit To All Plant Sequences

>Glyma10g37690.1   sequence type=predicted peptide   gene model=Glyma10g37690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRSLAMASSSMLCPKLGSCAVSHTKFQAFHLSSMFSPLGRGLVSPWSGLKHLGISAKAKPLIHIDRKGGCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIKELQDVSREFKSTLEREIGLDDNLSPTQNTYNSNIRNTTPTSSSTSTVDPNGTPDPTKAYSSEEYLKITEEQLKASAAQQQGQTPSKEGDNEPQIQPSAEETATTVPPPQKPESET*

>Glyma10g37690.2   sequence type=predicted peptide   gene model=Glyma10g37690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRSLAMASSSMLCPKLGSCAVSHTKFQAFHLSSMFSPLGRGLVSPWSGLKHLGISAKAKPLIHIDRKGGCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLRTFQPTIKELQDVSREFKSTLEREIGLDDNLSPTQNTYNSNIRNTTPTSSSTSTVDPNGTPDPTKAYSSEEYLKITEEQLKASAAQQQGQTPSKEGDNEPQIQPSG*

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