SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G23980 | AT | Annotation by Michelle Graham. TAIR10: ferric reduction oxidase 4 | chr5:8098167-8101282 REVERSE LENGTH=699 | SoyBase | E_val: 0 | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0000293 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ferric-chelate reductase activity | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| GO:0050660 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: flavin adenine dinucleotide binding | SoyBase | N/A | ISS |
| KOG0039 | KOG | Ferric reductase, NADH/NADPH oxidase and related proteins | JGI | ISS | |
| PTHR11972 | Panther | NADPH OXIDASE | JGI | ISS | |
| PTHR11972:SF3 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PF01794 | PFAM | Ferric reductase like transmembrane component | JGI | ISS | |
| PF08022 | PFAM | FAD-binding domain | JGI | ISS | |
| PF08030 | PFAM | Ferric reductase NAD binding domain | JGI | ISS | |
| UniRef100_G7IEN0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: NADPH oxidase n=1 Tax=Medicago truncatula RepID=G7IEN0_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LDM6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDM6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g37600 not represented in the dataset |
Glyma10g37600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g231600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g37600.1 sequence type=CDS gene model=Glyma10g37600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGAGCCACACATTCCTTAGGATAACTTCACTTTTGGTGTTTATTGGGTGGCTCACGGTTTGGATCTTGTTGCCTACAAAGGTTTACAAGAACACCTGGACCCCCAAACTCAAAACCAAGTTAAACTCTACATACTTTAGAGAGCAAGGAACAAATCTCTTGCTTTTCACATTCCCCGTTATGCTCATAGGGGCCCTGAGCTGCATCTATCTCCATCTTCACGAAAAAGGAACGGAAAAGCTACCTTCCAAAAGCGGAGGAGTTGTAAACAGATGGTTATGTTTCTTGAGACGTCCATTTCTTGTGATGTCTCCAATAGGAATTGTCACATCTATGGAGATTATTTTTGCACTCATGTTTGTCGCACTCTTGATATGGTCCCTTTCCAATTACTTACATACCAGCTTTGGACACCTCCATATGCACAAGGAGGGCGAGAAAGTGTGGCAAGCAAAGTTCAGGAGTGTATCCCTGAGACTTGGGTACATAGGAAACATATGTTGGGCATTTCTATTCTTTCCAGTGACAAGAGGATCCTCTATTCTTCCCCTTGTTGGACTCACATCTGAGTCAAGCATCAAGTACCATATCTGGCTTGGACATCTATCCAATGTTCTCTTTGCTGCGCATACTGTAGGTTTCTTCATCTATTGGGGCATCACACACCAAATGAAAGAGACACTAGAGTGGAGCAAGACATATGTATCAAATGTAGCTGGGGTGATTGCAATTTTAATTGCATTAGTGATGTGGGTGACCAGCTTTCCAGGGTTCAGGCGAAAAATGTATGAGGTTTTCTTCTACACTCACCATCTCTACACTCTCTACATCTTATTTTATGCCATGCACGTCGGCGTTGAATGGATGTGCATGATTTCTCCGGGGATTTTCCTTTTTCTCATTGATAGACACCTTAGATTCTTACAATCTCGCCAATGTGCTCCGTTGCTATCAGCTCGCCTTTTACCTTGTGGTGCACTTGAACTCAACTTCTCCAAGAATCCAAGTTTATACTATAACCCCACGAGCATGGTGTTTATAAATGTGCCCAAGATTTCCAAGCTGCAGTGGCACCCTTTTACAGTCATTTCAAGTTGTAACATGGAAACAGATATTCTGAGTGTTGCCGTTAAAACTGGGGGTAGCTGGTCAAACAAACTTTATCAGGAACTTTCCTCATCTGCTTTGGATCATCTCAACGTTTCTGTTGAAGGACCCTATGGACCAACTACGACTTCACAATTTTTAAGGTACAAGCAGCTTGTGTTGGTGAGTGGTGGAAGTGGCATCACTCCCTTCATATCCATAATCCGGGATCTCATATTTCAAAACCGACAAGAACAAGAATCCCACGTTCCAAAAGTCCTACTTGTTTGTGCTTTCAAGAATTCTGCTGATCTAACCATGTTAGATCTTTTGCTTCCTCTTTTTGTTTCAACAACTCAATTCTCAAACCTTCATCAATTGCAAATCGAGGCCTATATTACCAGAGAAAAAGAAGAAGCCCCAAGAGATTCTCAAAAACAAATCCAAACCAAATGGTTTAAGCCTATCCTCTCAGACTCTCCTATCTCACTTGTATTAGGCCCAAACAACTGGCTATGGCTTGGTGCTATAATCTCGTCATCCTTTCTCATGTTCCTCCTCCTTTTGGGGATTATCACTCGTTACTACATATATCCAATTGAAAATAACTCAGATGAAGTTTATCATTGGACCTTTAAGGTTTTGTGGTTCATGTTTCTACTTTGTGCAGTCATATGCATATGTTCTAGTGCAGTTTTTCTTTGGTGGAAGAGACAAAACTCCTTGGAAAGTAAGCAAATCATGAATGTAGAATTTCCAACACCAACAAGGTCACCAGGGTCATGGATTTATGGCTCAGAGAGAGAACTAGAAAGTCTTCCCCACCAGTCTCTAGTGCAAGCAACCAATGTGCATTTTGGTGCAAGACCTGATCTCAAGAAAATTCTTTTTGAGTGCAAAGACAAAGACATTGGAGTCTTGGTTTCTGGGCCAAGGAGCATGAGACATGAAGTTGGCAAAATCTGTGCTTCCGGTCTAGCTGATAATCTTCACTTTGAATCATTCAGCTTTACATGGTGA
>Glyma10g37600.1 sequence type=predicted peptide gene model=Glyma10g37600 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRSHTFLRITSLLVFIGWLTVWILLPTKVYKNTWTPKLKTKLNSTYFREQGTNLLLFTFPVMLIGALSCIYLHLHEKGTEKLPSKSGGVVNRWLCFLRRPFLVMSPIGIVTSMEIIFALMFVALLIWSLSNYLHTSFGHLHMHKEGEKVWQAKFRSVSLRLGYIGNICWAFLFFPVTRGSSILPLVGLTSESSIKYHIWLGHLSNVLFAAHTVGFFIYWGITHQMKETLEWSKTYVSNVAGVIAILIALVMWVTSFPGFRRKMYEVFFYTHHLYTLYILFYAMHVGVEWMCMISPGIFLFLIDRHLRFLQSRQCAPLLSARLLPCGALELNFSKNPSLYYNPTSMVFINVPKISKLQWHPFTVISSCNMETDILSVAVKTGGSWSNKLYQELSSSALDHLNVSVEGPYGPTTTSQFLRYKQLVLVSGGSGITPFISIIRDLIFQNRQEQESHVPKVLLVCAFKNSADLTMLDLLLPLFVSTTQFSNLHQLQIEAYITREKEEAPRDSQKQIQTKWFKPILSDSPISLVLGPNNWLWLGAIISSSFLMFLLLLGIITRYYIYPIENNSDEVYHWTFKVLWFMFLLCAVICICSSAVFLWWKRQNSLESKQIMNVEFPTPTRSPGSWIYGSERELESLPHQSLVQATNVHFGARPDLKKILFECKDKDIGVLVSGPRSMRHEVGKICASGLADNLHFESFSFTW*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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