SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24030 | AT | Annotation by Michelle Graham. TAIR10: SLAC1 homologue 3 | chr5:8118618-8120993 REVERSE LENGTH=635 | SoyBase | E_val: 0 | ISS |
| GO:0006598 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polyamine catabolic process | SoyBase | N/A | ISS |
| GO:0006873 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular ion homeostasis | SoyBase | N/A | ISS |
| GO:0009698 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phenylpropanoid metabolic process | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0042398 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| PF03595 | PFAM | C4-dicarboxylate transporter/malic acid transport protein | JGI | ISS | |
| UniRef100_G7KJM6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: C4-dicarboxylate transporter/malic acid transport protein n=1 Tax=Medicago truncatula RepID=G7KJM6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C7B3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C7B3 related cluster n=1 Tax=unknown RepID=UPI000233C7B3 | SoyBase | E_val: 0 | ISS |
|
Glyma10g37370 not represented in the dataset |
Glyma10g37370 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g229300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g37370.2 sequence type=CDS gene model=Glyma10g37370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAACAACCTTAACCGTGAAACAGAAGGGCATGGCTTGCCTAAAATTCCATCACTAGTTCAACATATATCATCAAATGATGAAGGAAACTTTGACAATGGTGACTTGAAAAATCTAAGCTCATCTTTCAAAGAGAATGAAACAATCTTAGCAGGAAGCCAAGGTGATGAACATGCAGCCATTAATCATCGGAATAAGCATTCGGTATCTATCAACATACCATTCTCTTGTGAAGAGGTTCAGCTGCATAACACCGTAAGAGTTCTCTATAGTGGCGAAAATGATTTCTCTTCTCAATCAACTACTACAGACTCCAAGCCACCATTACCATCACAATCAATGCCAAATGGCAGTCTGCACTCAGAGCCAGCAAGCGGTGTCAATTTTAACAATCAAGAAAGCGTCATAAGCTTGAATAATAAGAGGATTGATTTTTTCAAAACATGGTCCAGTAAACTAGGGGGACACATATCAGTTATGAGTGGAAAGGTACATACAGAAAGTGCAGAAGATGATAACAGCTTATGCAACACTAATAAGCCTTTACCTGTTGATTTGTTCTTCAAAACATTGGAGGGTCCACAGTTACAAACTCCTAAGAAGTCTTCAGAAGAGATGGTGCTTCCTCAGGACAAGCAGTGGCCATTTCTTCTTCGGTTTCCGGTTTCATCTTTTGGTATTTGTCTTGGAGTTAGCAGTCAAGCAATTCTTTGGAAAGCATTGGCCACGTCTCCTTCCACTGCATTTCTTCACATAACCCCTAAAATAAATTTCATCCTATGGTTCATCTCCATTGCTATTGTTGCTACTATTTTCACCACCTATCTCTTCAAAATAATTCTCCATTTTGAAGCAGTTCGTCGTGAGTACCAACATCCGGTTCGTGTTAACTTCTTCTTTGCACCATGGATAGCCCTTTTGTTCCTAGCTCTTGGAGTTCCCCCATCAGTTACCAAGGACTTGCATCAAGCAGTTTGGTACATTCTAATGATTCCATTGTTCTGCCTTAAGCTAAAGATATATGGACAGTGGATGTTTGGGGGCAAAAGACTGCTGTCAAAGGTGGCCAATCCAACAAATCTCTTAGCAATTGTTGGAAATTTTGTAGGAGCCTTATTGGGTGCATCAATGGGCCTAAAAGAAGGGCCTCTTTTCTTCTTTGCTCTTGGGCTTGCTCACTACATGGTGTTGTTTGTAACTCTCTCCCAGATGCTTCCAACAAATAAGACCATCCCAAAAGACCTCCATCCAGTGTTCTTTCTTTTTGTGGCACCGCCTAGTGTTGCTGCTATGGCATGGGCTAAGATTCAGGGTTCATTTCATTATGAATCAAGGATTTTCTATTTCACTGCCATGTTCCTATATATTTCACTGGCTGTCCGGGTCAATCTTTTCAGAGGATTCAAATTCTCACTTTCATGGTGGGCCTACACTTTTCCAATGACTGCTGCAGCAATTGCTACCATAACCTATACAAATCAAGTCACAAATGTACTAACTCAAGCTTTGAGTGTAATATTGAGTCTCATTGCTACATTCACAGTAACAGCAGTGCTTGTCTCGACTATAGTGCATGCCTTTGTCCTACGAGACCTCTTTCCCAATGACCTTGCCATTGCCACAAGTGAGAGAAAGCAAAAACCACGCAGGAAATGGCTCCCATTTAAGACTTGGGAGCCATGA
>Glyma10g37370.2 sequence type=predicted peptide gene model=Glyma10g37370 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENNLNRETEGHGLPKIPSLVQHISSNDEGNFDNGDLKNLSSSFKENETILAGSQGDEHAAINHRNKHSVSINIPFSCEEVQLHNTVRVLYSGENDFSSQSTTTDSKPPLPSQSMPNGSLHSEPASGVNFNNQESVISLNNKRIDFFKTWSSKLGGHISVMSGKVHTESAEDDNSLCNTNKPLPVDLFFKTLEGPQLQTPKKSSEEMVLPQDKQWPFLLRFPVSSFGICLGVSSQAILWKALATSPSTAFLHITPKINFILWFISIAIVATIFTTYLFKIILHFEAVRREYQHPVRVNFFFAPWIALLFLALGVPPSVTKDLHQAVWYILMIPLFCLKLKIYGQWMFGGKRLLSKVANPTNLLAIVGNFVGALLGASMGLKEGPLFFFALGLAHYMVLFVTLSQMLPTNKTIPKDLHPVFFLFVAPPSVAAMAWAKIQGSFHYESRIFYFTAMFLYISLAVRVNLFRGFKFSLSWWAYTFPMTAAAIATITYTNQVTNVLTQALSVILSLIATFTVTAVLVSTIVHAFVLRDLFPNDLAIATSERKQKPRRKWLPFKTWEP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
