SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G52910 | AT | Annotation by Michelle Graham. TAIR10: timeless family protein | chr5:21457774-21463159 REVERSE LENGTH=1141 | SoyBase | E_val: 0 | ISS |
| GO:0006261 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication | SoyBase | N/A | ISS |
| GO:0042752 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| KOG1974 | KOG | DNA topoisomerase I-interacting protein | JGI | ISS | |
| PTHR22940 | Panther | TIMEOUT/TIMELESS-2 | JGI | ISS | |
| PTHR22940:SF4 | Panther | gb def: Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC20 | JGI | ISS | |
| PF04821 | PFAM | Timeless protein | JGI | ISS | |
| PF05029 | PFAM | Timeless protein C terminal region | JGI | ISS | |
| UniRef100_G7IDV7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Topoisomerase 1-associated factor n=1 Tax=Medicago truncatula RepID=G7IDV7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LDJ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDJ2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g37220 not represented in the dataset |
Glyma10g37220 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g30420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g227900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g37220.1 sequence type=CDS gene model=Glyma10g37220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACACTGAAGGCTTATCGGTAATCTGCGCTGGCATTGGAACCATCGAAGCCGACGATGAAGGCAACCAAATTGGTTACATCAAAGGCCAATACTGTCTCGATAATCTGAAAGACTTGCTACGTTTTCTGAGGCGCGACGATCCCCAAACGCGCGATGTCTTCAAGCAAGTCTGCAAATGGAACATCGTTTCCAAGTACTTAATCCCTACCATCGAGCTCTATCACGAAGATCGCAACTTGCTACTCAATGCAGTGAAGGTTCTGGTGTTCCTTACAATGCCGATCGAGCCTTCTTCCACGGATATATCTCAGCAGTTGGAGTATCTTTGGGGTTTGAAGTCTGCTTTGACTAACAGTGATGTTGCTGCAGTGATAGTGTCGTTTCTAGAGAGACCGCTCGAGAATTTGGAACGTAATGCGTTCAGTGAGGATGATTGGAAATTGGTACAGCTAGTGCTGACGTTATTTAGAAATATCCTAGCTGTCCAAGAGATTCCGATGCACCAGAAGTCAGGGGGACTTGCTACTCAGTTGTTATCGCTGAGAGACCGGTTTCTGGAACTTTTGTTTCGTGAAAATGTAATGGATATAATCCTGGTTATATCTCAATACGTTGGTAGTTCCAATGTTTATCTCCGTCAGGATAACTTGCTTCTACTGGAAATTTTTCATTACATTTTGATGGGTCAGGACCCGGAGTTAATTGTTTGGGCACATTTGAAGGAATCAAAGGCGGATGAACAACCCCAAACTTCTCTTTATAGTCTCCAGTTCATTTTGGAGGAGGAAAAGAAGAGAAGAAATATTTGTAAGCTCAACAATCTGAGTCGACATTCACAATTTAGTCCAACATTTGCTCGGCTTACCATGGATGGTTGTAAGGCAGTAATTAAGGGAAACCCTAATTCTTCTCATAATGTGCTGCTTAAAGCACAAAATGTCGCTCGAGGTCCTACCAAAAGAACTGTGTGGGATCATCCAAGGTTACCTTCAACGGAGGATAAGATATTGGAGTTGCTTCACGGATTTGTGAATCAGTTTCTTTCTGGGGGATACAATGTTTTGATGCAATCCATTCGTGAAGATATTGAAAAAGAACATCCCTCAATTCAAAAAAGTGATGTTGCTGTTTTCTTTCAAGTGGCTGAATTTGTCACTTCATTTCAGTTTTACAAGTATTCAGCTTCTAAGACCAAGGAGGAAGGGGACACATTTGAGACTTTGAGTGATAAAGATGCAGTCACCTCAGATTTCAGTGGTCAAATATGTGGGCCAATTGCAGCATCCTTGAATGAGACAATGTTTCAATTGATCATTTCAAAGTGGCGGCATGCCTATGATGGTCTAAAGGAAACAAATGACTATCAGTTTCTATCTGCAGCTGGTTCTCTTTTGAAAAACATGATTCGCATGCTGGATTTGATACTTAAATTGTTGCCTGAAAACTCAAAGGAACCTCAAACAGCTCGCATACTTCTGTACAAGTTATTTTATGATCAGACCGAGGAAGGGATGACTCAGTTCCTATTGAATTTGATTAAAACCTTTGACATCCACAAGCAACCCAAAAGTAATCTTTCAGATTTAGTGGAAATCATTCACAAGGTTGTAAGGCTGATGGATAATCTTCAGTCTCGAGGAGCATTGAGGGTGTCTAGAAAATCAAGGAAAGTGAAAAAAAATAAAATTCCAGAAGGAACAGAATCAGGGGACAAACTGTCTGGAGATCATTCTTGCATTCAAAATGAAACTGGCATCTCAACTGCCAATCAATCAGCTGAAAATCAGCCACTGCTGGAAGTACTACCAAATGCAAATTCCACTGGGGAAGATGTTGTCCCTGATGATAATGAACATGAAAATCGTGTTGAGGAAGATGAGAACTCCCAAGTTGGGTTAGAACCAATGGGAGCCACAAATTCTGAACATGTTAATGAGGATATGTTGGATGGTACTAATAATTTTTCGGAAGATGAGCAACTACATGCATATAATGAAGTTGATTTCAAGGTTTCAACGCTGGTCTCTGCCTTTGCAAATCACAATATCATTCAGAAATTATGTTGGTTGCTCAAGTTTTACAAGAGCAATTCCCTGGCTACAAATTATTACATAATAAGCATGCTGCGGAGAATAAGTGATGACCTTGAACTCCATCCTATGCTTTACCAGTTATCACTGCTCACAACTTTTTATGACATCCTGATTGAACAAAAGTCATGCCCCTGCAAGGATTATGCAGGTATAGTTGATTTCCTGACTTGTTTGGTCAGAAAGATGCTAAAGAAAATGAAAAAGCAACCTCTCTTGTTTGTGGAACTCCTTTTCTGGAAGACTCGAAGGGAATGTCATTACATCAATGCTGAATATTTGTTGAGCGAGCTTGGTCATTTGAAGAAAGAAAGTGCCAATTGGAATAACTCTCAAGGAGATGAAGAAATTGGTTCATCCCCAACAAAGGTGTGGACACGTAGAAGCATAGCTGATGCACTTGGTGAGGATGAAGCTGATGTTGTGATTACTCATGACTCAAGATGTCAACAAGACAAGCTTGAGGATGTTATTGAAGGTTTTGCATCTACCTCTGGCAGTAACAGTGGCAAAGATGTTCATAATGGGGAGCAATTGATGGAAGATGAATCTCAACTGGCTCCAAGGAGAAGGAAGAAACTTGTTCTTGATGGTGATTTGGAAAGACAAATCAAGGATCTCTATGAGAAATTCAAAGATGAACCACATTGCAGTCGTCATATAGCTGAAGTGCTAGATCCAGATGGTAAAATTTCACCAGCTCAAATTTCCAATATGTTAAAAAGATTAGGACTAGCAGTTGCACCTAAGAGAAAGATGGGTGATGCTGATGCTGAAGGACATTTGTCTACTAGCCCTAATCAGTTAGATGGTGACAAAAGAGCTACCAATCATAAATCAGTGAATTTGGAGGGAAGCCTGTTGGTTCAGCACCTGCAAAAAAAGAAGAGAGTCCAGGCTTTCAATGAAGCTCAAGAAGCTCTGATCAAAGTTCTATATGAGCAATTCAAGGATCACAGAAGATGCAGTTACATGATAGCCAATGCACTGGATGAGGATGGTAAAATCACTGCTGCTCAAGTCTCTCGAAAACTTAAGCAACTTGGTTTATCTCTTCCTCAGAAGAGTTCTGGAGGCAAAATGCACCCAAAGGATGCAGATCTCATGGATCTTTCAAATGATAGGATTAATGAATCTGATGATGAGACATTGGTAACATTGATAAAAAGGAAGAAAATGGAGAATGACAAATTATCAAGGGGACAGTTACATGGACAAATCAGTGAGGATAGATTGTCAATAGATGATTCTGATGATGAAATGCTCAGCTCTGTTCTCAAGGAAAAAATAAATAGCAAAGTATCAACTGAACAATTACTTGAACCCATCAATGTGGATGCATTGTCAAGAGATGATTCTGATGATGAAATGCCCAGCTCTGCTCTCAAAAGAACTAGAAGATCCTCTCTTAATTCAAAGCAAGTTGAGCTTGAAAATATCCAAATTCAGGAGAGAATAATGGGCGATGATTCTTTCAATGAAGGCAAAACAGATGCTTTGGAAAGGGATAATCGTGTTGATTCTATGAATTCCTCCCAAATAGAACATCAGCAAATGGATGACTTAGCAGATTCAGAAGATGAAGTGGCTGTTAGTGGATTTCCTGACAATGCCAGATCTAGAAGGCAGCTGAGAATGGTGATTGATCCTGAGGATGATGACTGA
>Glyma10g37220.1 sequence type=predicted peptide gene model=Glyma10g37220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDTEGLSVICAGIGTIEADDEGNQIGYIKGQYCLDNLKDLLRFLRRDDPQTRDVFKQVCKWNIVSKYLIPTIELYHEDRNLLLNAVKVLVFLTMPIEPSSTDISQQLEYLWGLKSALTNSDVAAVIVSFLERPLENLERNAFSEDDWKLVQLVLTLFRNILAVQEIPMHQKSGGLATQLLSLRDRFLELLFRENVMDIILVISQYVGSSNVYLRQDNLLLLEIFHYILMGQDPELIVWAHLKESKADEQPQTSLYSLQFILEEEKKRRNICKLNNLSRHSQFSPTFARLTMDGCKAVIKGNPNSSHNVLLKAQNVARGPTKRTVWDHPRLPSTEDKILELLHGFVNQFLSGGYNVLMQSIREDIEKEHPSIQKSDVAVFFQVAEFVTSFQFYKYSASKTKEEGDTFETLSDKDAVTSDFSGQICGPIAASLNETMFQLIISKWRHAYDGLKETNDYQFLSAAGSLLKNMIRMLDLILKLLPENSKEPQTARILLYKLFYDQTEEGMTQFLLNLIKTFDIHKQPKSNLSDLVEIIHKVVRLMDNLQSRGALRVSRKSRKVKKNKIPEGTESGDKLSGDHSCIQNETGISTANQSAENQPLLEVLPNANSTGEDVVPDDNEHENRVEEDENSQVGLEPMGATNSEHVNEDMLDGTNNFSEDEQLHAYNEVDFKVSTLVSAFANHNIIQKLCWLLKFYKSNSLATNYYIISMLRRISDDLELHPMLYQLSLLTTFYDILIEQKSCPCKDYAGIVDFLTCLVRKMLKKMKKQPLLFVELLFWKTRRECHYINAEYLLSELGHLKKESANWNNSQGDEEIGSSPTKVWTRRSIADALGEDEADVVITHDSRCQQDKLEDVIEGFASTSGSNSGKDVHNGEQLMEDESQLAPRRRKKLVLDGDLERQIKDLYEKFKDEPHCSRHIAEVLDPDGKISPAQISNMLKRLGLAVAPKRKMGDADAEGHLSTSPNQLDGDKRATNHKSVNLEGSLLVQHLQKKKRVQAFNEAQEALIKVLYEQFKDHRRCSYMIANALDEDGKITAAQVSRKLKQLGLSLPQKSSGGKMHPKDADLMDLSNDRINESDDETLVTLIKRKKMENDKLSRGQLHGQISEDRLSIDDSDDEMLSSVLKEKINSKVSTEQLLEPINVDALSRDDSDDEMPSSALKRTRRSSLNSKQVELENIQIQERIMGDDSFNEGKTDALERDNRVDSMNSSQIEHQQMDDLADSEDEVAVSGFPDNARSRRQLRMVIDPEDDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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