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Report for Sequence Feature Glyma10g36880

Feature Type:gene_model
Chromosome:Gm10
Start:44920211
stop:44922263
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G09800AT Annotation by Michelle Graham. TAIR10: S18 ribosomal protein | chr4:6173818-6174963 FORWARD LENGTH=152 SoyBaseE_val: 5.00E-97ISS
GO:0001510GO-bp Annotation by Michelle Graham. GO Biological Process: RNA methylation SoyBaseN/AISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0042254GO-bp Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0015935GO-cc Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit SoyBaseN/AISS
GO:0022627GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG3311 KOG Ribosomal protein S18 JGI ISS
PTHR10871Panther 30S/40S RIBOSOMAL PROTEIN JGI ISS
PF00416PFAM Ribosomal protein S13/S18 JGI ISS
UniRef100_B9SEC1UniRef Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S18, putative n=1 Tax=Ricinus communis RepID=B9SEC1_RICCO SoyBaseE_val: 8.00E-96ISS
UniRef100_I1LDF8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDF8_SOYBN SoyBaseE_val: 1.00E-129ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g36880 not represented in the dataset

Glyma10g36880 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g224200 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma10g36880.4   sequence type=transcript   gene model=Glyma10g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCAATCAGCCAGCTACAACAGCATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGTGCTTTTTTTTATTGGTTGAGTTCAATTGCTCGTTAATTCGCACATTTTTGTGGTTATTGTTGAAATTGGGATTTTTGTTTGTCAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAGCGCTGAGCTCTCACTTCCTTTCTTTTTTCCCCGTTTTTTGAAGGAGATATATTTTTGTTTTGTTAAAGTCGACAAAATTTTATTGAGAACGGATTTGGATTTTGTTGCATTCGAACGTTGATTTTGATTGGGTTGGTTGATCTTATTTATTTTACTTATTAATCCTATGTCTTTTTGGTCCAATTTGTGTTGGAGACCATGTTGATTTCCATTAAATATGCCCTAATCTAGTAATCTCGAGCAAGGTTATTGTATGATTACTACCCAAGGCCTATCTTAGAAGCATAATGCTTGAGTGAAATATTTCTTATGTGAA

>Glyma10g36880.5   sequence type=transcript   gene model=Glyma10g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTCAGATCCTCAATCAGCCAGCTACAACAGCATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGTAATGAAGATTGACGTTTTCTGGATTAATATGGAAAAATGTTTAGATATAACTGATACACTGTTTTGTGAAAATCAACCTGTTTAATCTTGCTGTGTTTTAAATGATATTGTGATTCATCTTAACATTTTTTTGCTAACCTCCCTAACATACATTCTTTCAAATATATTGAATTTGAGTGCGCTGAGTGTCTGCTCTTTCCCTAACTTGTGTTGGAACTGTTTCCAAATGAAAACTGAAAAATTCATGTAAACTAAACAAGACATTGTCCAGCTGTTCCAATAGATCTTTTATTGTATGTGTACTTGCATAATATGGCATAGCTTGCTTCTTTTTGGTCATTCATCAAATGTCATAAACTGCAAAAGTATTAAATAATGTGTGTGGGTATGAACGGAAATACACGGTGTTCTCTCTTCTTCGTTGTTGCCAAAATGTAGTTGCAGTTAAAGGTATTGACATTCAGAATATGCTCTGCTTGGCTGAATGGTAAGCCTTGTATTGCTGAAAAGAATGGAAAATCAAAGGAAGCTGTTAATTGTTGATACATTTTAGTTTTCTAATACTGTGCTTTCGGCATGATGTTAGATATAATACCATATGAATTAGATTTGTATGGCTTCAACACTCTTGTCTGCATGTTAAGCTGCGTTTGGTATCATGGAGGGAATTGAAAAAAGAAAAAAAGAAGGAAAAGGATTGAACAGTGAAGTGTAGTAATCATCATTCCCTTGATTGGTATCAATATCAATATATCGTCCATTTAAAAAGAAGGGGGTGGCTTCCTCTTCATTTGTTTTCATAAAAACGTATAGAAATATATGGAAACACATGTCAAATTACTTTCTATTAAATCCAATGAAATTGATATTTATACTTGCATGCAGGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAGCGCTGAGCTCTCACTTCCTTTCTTTTTTCCCCGTTTTTTGAAGGAGATATATTTTTGTTTTGTTAAAGTCGACAAAATTTTATTGAGAACGGATTTGGATTTTGTTGCATTCGAACGTTGATTTTGATTGGGTTGGTTGATCTTATTTATTTTACTTATTAATCCTATGTCTTTTTGGTCCAATTTGTGTTGGAGACCATGTTGATTTCCATTAAATATGCCCTAATCTAGTAATCTCGAGCAAGGTTATTGTATGATTACTACCCAAGGCCTATCTTAGAAGCATAATGCTTGAGTGAAATATTTCTTATGTGAA

>Glyma10g36880.2   sequence type=CDS   gene model=Glyma10g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAGCGCTGA

>Glyma10g36880.4   sequence type=CDS   gene model=Glyma10g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCCTCAATCAGCCAGCTACAACAGCATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGTGCTTTTTTTTATTGGTTGAGTTCAATTGCTCGTTAATTCGCACATTTTTGTGGTTATTGTTGAAATTGGGATTTTTGTTTGTCAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAGCGCTGA

>Glyma10g36880.5   sequence type=CDS   gene model=Glyma10g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTTTCAGATCCTCAATCAGCCAGCTACAACAGCATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGTAA

>Glyma10g36880.2   sequence type=predicted peptide   gene model=Glyma10g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLVANEDFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADVDMNKRAGELTAAELDSVMTVVANPRQFKIPNWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*

>Glyma10g36880.4   sequence type=predicted peptide   gene model=Glyma10g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SSISQLQQHRRRRNPPTTTLPRQKMSLVANEDFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADVDMNKRCFFLLVEFNCSLIRTFLWLLLKLGFLFVRAGELTAAELDSVMTVVANPRQFKIPNWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*

>Glyma10g36880.5   sequence type=predicted peptide   gene model=Glyma10g36880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SFRSSISQLQQHRRRRNPPTTTLPRQKMSLVANEDFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADVDMNKRAGELTAAELDSVMTVVANPRQFKIPNWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIR*







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