|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT4G09800 | AT | Annotation by Michelle Graham. TAIR10: S18 ribosomal protein | chr4:6173818-6174963 FORWARD LENGTH=152 | SoyBase | E_val: 5.00E-97 | ISS |
GO:0001510 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA methylation | SoyBase | N/A | ISS |
GO:0006412 | GO-bp | Annotation by Michelle Graham. GO Biological Process: translation | SoyBase | N/A | ISS |
GO:0042254 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ribosome biogenesis | SoyBase | N/A | ISS |
GO:0005618 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cell wall | SoyBase | N/A | ISS |
GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0005840 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: ribosome | SoyBase | N/A | ISS |
GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
GO:0015935 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: small ribosomal subunit | SoyBase | N/A | ISS |
GO:0022627 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic small ribosomal subunit | SoyBase | N/A | ISS |
GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
GO:0003735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome | SoyBase | N/A | ISS |
KOG3311 | KOG | Ribosomal protein S18 | JGI | ISS | |
PTHR10871 | Panther | 30S/40S RIBOSOMAL PROTEIN | JGI | ISS | |
PF00416 | PFAM | Ribosomal protein S13/S18 | JGI | ISS | |
UniRef100_B9SEC1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 40S ribosomal protein S18, putative n=1 Tax=Ricinus communis RepID=B9SEC1_RICCO | SoyBase | E_val: 8.00E-96 | ISS |
UniRef100_I1LDF8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDF8_SOYBN | SoyBase | E_val: 1.00E-129 | ISS |
Glyma10g36880 not represented in the dataset |
Glyma10g36880 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma.10g224200 | Wm82.a2.v1 | IGC | As supplied by JGI |
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g36880.4 sequence type=transcript gene model=Glyma10g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCTCAATCAGCCAGCTACAACAGCATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGTGCTTTTTTTTATTGGTTGAGTTCAATTGCTCGTTAATTCGCACATTTTTGTGGTTATTGTTGAAATTGGGATTTTTGTTTGTCAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAGCGCTGAGCTCTCACTTCCTTTCTTTTTTCCCCGTTTTTTGAAGGAGATATATTTTTGTTTTGTTAAAGTCGACAAAATTTTATTGAGAACGGATTTGGATTTTGTTGCATTCGAACGTTGATTTTGATTGGGTTGGTTGATCTTATTTATTTTACTTATTAATCCTATGTCTTTTTGGTCCAATTTGTGTTGGAGACCATGTTGATTTCCATTAAATATGCCCTAATCTAGTAATCTCGAGCAAGGTTATTGTATGATTACTACCCAAGGCCTATCTTAGAAGCATAATGCTTGAGTGAAATATTTCTTATGTGAA >Glyma10g36880.5 sequence type=transcript gene model=Glyma10g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTTTCAGATCCTCAATCAGCCAGCTACAACAGCATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGTAATGAAGATTGACGTTTTCTGGATTAATATGGAAAAATGTTTAGATATAACTGATACACTGTTTTGTGAAAATCAACCTGTTTAATCTTGCTGTGTTTTAAATGATATTGTGATTCATCTTAACATTTTTTTGCTAACCTCCCTAACATACATTCTTTCAAATATATTGAATTTGAGTGCGCTGAGTGTCTGCTCTTTCCCTAACTTGTGTTGGAACTGTTTCCAAATGAAAACTGAAAAATTCATGTAAACTAAACAAGACATTGTCCAGCTGTTCCAATAGATCTTTTATTGTATGTGTACTTGCATAATATGGCATAGCTTGCTTCTTTTTGGTCATTCATCAAATGTCATAAACTGCAAAAGTATTAAATAATGTGTGTGGGTATGAACGGAAATACACGGTGTTCTCTCTTCTTCGTTGTTGCCAAAATGTAGTTGCAGTTAAAGGTATTGACATTCAGAATATGCTCTGCTTGGCTGAATGGTAAGCCTTGTATTGCTGAAAAGAATGGAAAATCAAAGGAAGCTGTTAATTGTTGATACATTTTAGTTTTCTAATACTGTGCTTTCGGCATGATGTTAGATATAATACCATATGAATTAGATTTGTATGGCTTCAACACTCTTGTCTGCATGTTAAGCTGCGTTTGGTATCATGGAGGGAATTGAAAAAAGAAAAAAAGAAGGAAAAGGATTGAACAGTGAAGTGTAGTAATCATCATTCCCTTGATTGGTATCAATATCAATATATCGTCCATTTAAAAAGAAGGGGGTGGCTTCCTCTTCATTTGTTTTCATAAAAACGTATAGAAATATATGGAAACACATGTCAAATTACTTTCTATTAAATCCAATGAAATTGATATTTATACTTGCATGCAGGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAGCGCTGAGCTCTCACTTCCTTTCTTTTTTCCCCGTTTTTTGAAGGAGATATATTTTTGTTTTGTTAAAGTCGACAAAATTTTATTGAGAACGGATTTGGATTTTGTTGCATTCGAACGTTGATTTTGATTGGGTTGGTTGATCTTATTTATTTTACTTATTAATCCTATGTCTTTTTGGTCCAATTTGTGTTGGAGACCATGTTGATTTCCATTAAATATGCCCTAATCTAGTAATCTCGAGCAAGGTTATTGTATGATTACTACCCAAGGCCTATCTTAGAAGCATAATGCTTGAGTGAAATATTTCTTATGTGAA
>Glyma10g36880.2 sequence type=CDS gene model=Glyma10g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAGCGCTGA >Glyma10g36880.4 sequence type=CDS gene model=Glyma10g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCCTCAATCAGCCAGCTACAACAGCATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGTGCTTTTTTTTATTGGTTGAGTTCAATTGCTCGTTAATTCGCACATTTTTGTGGTTATTGTTGAAATTGGGATTTTTGTTTGTCAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGAACCATCGTGGTTTGAGACACTACTGGGGTCTTCGTGTACGTGGCCAGCATACCAAGACCACTGGTCGTAGGGGTAAAACTGTTGGTGTGTCCAAGAAGCGCTGA >Glyma10g36880.5 sequence type=CDS gene model=Glyma10g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTTTCAGATCCTCAATCAGCCAGCTACAACAGCATCGTCGGCGGCGTAACCCTCCAACAACAACACTTCCTCGTCAGAAAATGTCTCTGGTGGCGAACGAGGATTTCCAGCACATTCTGCGTGTGCTGAACACCAACGTGGATGGGAAGCAGAAGATAATGTTCGCAATGACCTCCATCAAGGGTATTGGAAGGAGATTCGCCAACATCGCTTGCAAGAAGGCTGATGTTGACATGAACAAAAGGGCTGGTGAGTTGACTGCTGCTGAGTTGGACAGTGTGATGACTGTGGTGGCGAACCCTAGGCAGTTCAAGATCCCAAACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATACTCTCAAGTTGTGTCTAATGCTCTTGATATGAAGCTCAGGGATGATCTCGAGAGACTCAAGAAAATCAGGTAA
>Glyma10g36880.2 sequence type=predicted peptide gene model=Glyma10g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSLVANEDFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADVDMNKRAGELTAAELDSVMTVVANPRQFKIPNWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* >Glyma10g36880.4 sequence type=predicted peptide gene model=Glyma10g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high SSISQLQQHRRRRNPPTTTLPRQKMSLVANEDFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADVDMNKRCFFLLVEFNCSLIRTFLWLLLKLGFLFVRAGELTAAELDSVMTVVANPRQFKIPNWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR* >Glyma10g36880.5 sequence type=predicted peptide gene model=Glyma10g36880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high SFRSSISQLQQHRRRRNPPTTTLPRQKMSLVANEDFQHILRVLNTNVDGKQKIMFAMTSIKGIGRRFANIACKKADVDMNKRAGELTAAELDSVMTVVANPRQFKIPNWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIR*
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