SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G43580 | AT | Annotation by Michelle Graham. TAIR10: Sphingomyelin synthetase family protein | chr1:16410673-16412612 REVERSE LENGTH=421 | SoyBase | E_val: 0 | ISS |
| GO:0000394 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009086 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3058 | KOG | Uncharacterized conserved protein | JGI | ISS | |
| PTHR21290 | Panther | SPHINGOMYELIN SYNTHETASE | JGI | ISS | |
| PTHR21290:SF13 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| UniRef100_I1LDF6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDF6_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q01L86 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: OSIGBa0076I14.6 protein n=2 Tax=Oryza sativa RepID=Q01L86_ORYSA | SoyBase | E_val: 0 | ISS |
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Glyma10g36860 not represented in the dataset |
Glyma10g36860 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g30750 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g36860.1 sequence type=CDS gene model=Glyma10g36860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCCTACATCGCCGTCGACTACCTCCGCCACCTTTCTCCGGTGTGGCACTCGCGTCTGCAACCGGCACTGTGGTCCCTCCTCGCCCTCGCTGCCGTGGTCCGCGTCCCCTCCTACCGGCACTGGTCCGCGGAGTTCCGGTCGGCGATTCCGTTCATCGCCTCCATGTTCTTTATGCTCGCCGCCCTCCTCTACGAAATGATCTCCGTCCGCTCCGTCACCGCTGTGCTCGGCCTCGACTGGCACCTGAATACACCTCCTCTTCCAGATACGGGGCAATGGTTGCTCTTGGCGTTAAATGAGAAACTTCCTTCTCCAATTGTTGAGATATTAAGAGCTCGAATCATTGGACTGCACCATTACTTGATGCTGTTTATGATGCTGGCTTTCTCTGTGCTATTTGATTCTGTGAAAGCTCCAGGCCTCGGATTAGGTGCTAGGTACATGTTTACCATGGCAGTTGGTCGCCTTCTTCGTGCCATAACTTTTGCATCTACAATTCTGCCATCAGCTCGCCCTTGGTGTGCTGGTTCTCGGTTCAGAGTTCCGGGATATCCTCATCGTTGGGCTCAGAAATATTATGTTCCCTATGCTACAGATCATGATGCTATCAGCCGGGTGATAAAGGTCGATACAGCTTATGTTGACATTGGAAAACCAGTTGGTGACTACCAGCCAAATTGGGGTTCGATGAGCTTTCTAATTGATTTTATGCGACCCACTGTCTCCGAAGGACCTTCATGGTACAGTCTGTTAAAGAAAGCTGGAGGTGGCTGCAATGACCTCCTATACAGTGGCCACATGCTTGTAGCCGTACTCACAGCCATGGCTTGGACGGAAGCATATGGAGGATTCAGTTCTGCTCTTGTATGGCTTCTTGTGATGCACAGTGCCCAAAGAGAAATACGAGAACGCCATCATTACACTGTAGACTGCATTGTGGCCATCTATGTGGGGATTCTCTTATGGAAGATGACAGGTTTTATCTGGTCACGTGAAGCTACATCTAGTAATAGGAGGCTGAATAAGTTTGAGAAGATTCAAAGCAGACTAATCCAAGCTTCAAAAGACTCGGACATTGATGAAGTGAGGGAGCTTCTCAAAGAGTTTGAGTTAAGCAGTGAAGAGAGCAAGAATCAGATTGGAATTAAATATGCACGGTTGTTTCGAAGTGCCACCATTGTCTTTGCCCTCACCATTGTTGTTCTGGCTTTCACATTGACAAGTGATGGATGA
>Glyma10g36860.1 sequence type=predicted peptide gene model=Glyma10g36860 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSYIAVDYLRHLSPVWHSRLQPALWSLLALAAVVRVPSYRHWSAEFRSAIPFIASMFFMLAALLYEMISVRSVTAVLGLDWHLNTPPLPDTGQWLLLALNEKLPSPIVEILRARIIGLHHYLMLFMMLAFSVLFDSVKAPGLGLGARYMFTMAVGRLLRAITFASTILPSARPWCAGSRFRVPGYPHRWAQKYYVPYATDHDAISRVIKVDTAYVDIGKPVGDYQPNWGSMSFLIDFMRPTVSEGPSWYSLLKKAGGGCNDLLYSGHMLVAVLTAMAWTEAYGGFSSALVWLLVMHSAQREIRERHHYTVDCIVAIYVGILLWKMTGFIWSREATSSNRRLNKFEKIQSRLIQASKDSDIDEVRELLKEFELSSEESKNQIGIKYARLFRSATIVFALTIVVLAFTLTSDG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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