SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G76710 | AT | Annotation by Michelle Graham. TAIR10: SET domain group 26 | chr1:28789887-28792371 REVERSE LENGTH=492 | SoyBase | E_val: 0 | ISS |
| GO:0006281 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA repair | SoyBase | N/A | ISS |
| GO:0010224 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to UV-B | SoyBase | N/A | ISS |
| GO:0010228 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0018024 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone-lysine N-methyltransferase activity | SoyBase | N/A | ISS |
| PTHR22884 | Panther | SET DOMAIN PROTEINS | JGI | ISS | |
| PTHR22884:SF37 | Panther | SET DOMAIN PROTEIN | JGI | ISS | |
| PF00856 | PFAM | SET domain | JGI | ISS | |
| UniRef100_G0ZE03 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ASH1-like protein n=1 Tax=Phaseolus vulgaris RepID=G0ZE03_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LDE3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDE3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g36720 not represented in the dataset |
Glyma10g36720 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g30870 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g222800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g36720.1 sequence type=CDS gene model=Glyma10g36720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGATCCTCATACTGAAGAGTTGCCTCAGTACATACATATAAATCAGAATGAGTTTTGCATACGAAGGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATATGATGCTGATGACCCTGACAATGCATGTGGGGATAGCTGCCTGAATGTATTAACCAGCACTGAATGCACCCCTGGTTATTGTCATTGTGATATATTATGCAAAAATCAGAAATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTTAAAACTGAAGGCCGTGGATGGGGTCTTTTGGCTGATGAGGATATTAAGGCAGGACAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGTAGATCCCAGGCTTATGAAAATCAAGGTCTTAAAGATGCATTTATCATTTTCCTTAATGTGTCTGAATCTATTGATGCAACCAGGAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAACCGAACTGTGAGACGAGAAAATGGAATGTGTTGGGGGAAATAAGAGTTGGAATATTTGCAAAACATGATATTCCTATTGGAACTGAGTTAGCTTATGATTATAATTTTGAATGGTTTGGTGGTGCCAAGGTTCGTTGCCTCTGTGGTGCACTAAAATGTTCTGGATTCCTTGGAGCAAAATCTCGAGGTTTTCAGGAGGATACTTATCTATGGGAAGATGATGATGGCAGGTACTCAGTTGAGAAAATTCCTGTATATGATTCTGCAGAGGATGAACCGGTGTCAAATTTTAATGGACGAACCGAACCCTCTTTGGATGTTATAGTTAAAGCTGAGCAATTATCGGAGTCCACTGCTTTCCATGTTCAGCCCCTTGATTCAGTTCAGATGAAAGATTTAGATGTTAAGAAGATTAAAACTGATGTAGCAGACGAGGATATGAACTTTTATTCACAGGATAGTGAACATACCCTTTCTCAAAAGAATGCAATATCACATATCCGAAGTAATACTGCAGGCAGAAACTATTGCCTTGGACCTAGGTCCATGTCTACCAAAAGATCAAGGGCATATAATGGTGGAAGGTTCAAAAATCTCATAGAGAAGAAGATCGATGTTAAGTTTGCTGCTGCCCTCCTAGCATCCAAGGAAGCACAAGAGGAGATTTTTAATTGTGAGAAAATGAAGGATGATGCTACATCTGCTCTTGATTCCTTATATGATGAAATACGGCCTGCCATTGAAGAACACGAGAGGGATAGCCAAGACAGTGTATCCACGACTGTAGCAGAGAAGTGGATACAGGCTTGCTGCCTGAAATTAAAGGCGGAGTTTGACCTTTACTCATCCATTGTCAAAAATGTTGCTTGCACTGCGCAAAGGGCATCTGGCCAAGTAAAACCTACTGAAGTTGATAACGAAAACGAAATTAAGCTCCTGACAGGTTGA
>Glyma10g36720.1 sequence type=predicted peptide gene model=Glyma10g36720 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDPHTEELPQYIHINQNEFCIRRHKKQKEEDIAICECKYDADDPDNACGDSCLNVLTSTECTPGYCHCDILCKNQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSQAYENQGLKDAFIIFLNVSESIDATRKGSLARFINHSCQPNCETRKWNVLGEIRVGIFAKHDIPIGTELAYDYNFEWFGGAKVRCLCGALKCSGFLGAKSRGFQEDTYLWEDDDGRYSVEKIPVYDSAEDEPVSNFNGRTEPSLDVIVKAEQLSESTAFHVQPLDSVQMKDLDVKKIKTDVADEDMNFYSQDSEHTLSQKNAISHIRSNTAGRNYCLGPRSMSTKRSRAYNGGRFKNLIEKKIDVKFAAALLASKEAQEEIFNCEKMKDDATSALDSLYDEIRPAIEEHERDSQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAQRASGQVKPTEVDNENEIKLLTG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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