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Report for Sequence Feature Glyma10g36600

Feature Type:gene_model
Chromosome:Gm10
Start:44716720
stop:44738268
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g36600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G22770AT Annotation by Michelle Graham. TAIR10: gigantea protein (GI) | chr1:8062398-8067447 FORWARD LENGTH=1173 SoyBaseE_val: 0ISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0007623GO-bp Annotation by Michelle Graham. GO Biological Process: circadian rhythm SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009639GO-bp Annotation by Michelle Graham. GO Biological Process: response to red or far red light SoyBaseN/AISS
GO:0009908GO-bp Annotation by Michelle Graham. GO Biological Process: flower development SoyBaseN/AISS
GO:0010218GO-bp Annotation by Michelle Graham. GO Biological Process: response to far red light SoyBaseN/AISS
GO:0010378GO-bp Annotation by Michelle Graham. GO Biological Process: temperature compensation of the circadian clock SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0042752GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm SoyBaseN/AISS
GO:0048574GO-bp Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering SoyBaseN/AISS
GO:0048578GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of long-day photoperiodism, flowering SoyBaseN/AISS
GO:0080167GO-bp Annotation by Michelle Graham. GO Biological Process: response to karrikin SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005654GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleoplasm SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
UniRef100_E1CI63UniRef Annotation by Michelle Graham. Most informative UniRef hit: GIGANTEA n=1 Tax=Glycine max RepID=E1CI63_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1LDD1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LDD1_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma10g36600
LocusGene SymbolProtein Name
GI3 Gigantea gene 3

Expression Patterns of Glyma10g36600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g36600
ParalogEvidenceComments
Glyma20g30980 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g36600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g221500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g36600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g36600
>Glyma10g36600.3   sequence type=CDS   gene model=Glyma10g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTCCAGTGAAAGGTGGATTGACCGTCTTCAGTACTCCTCATTGTTCTGGCCTCCCCCACCAGATGGTCAACAAAGAAAGGATCAAATTGCTGCATATGTTGAGTACTTCATTCAGTTTACATCAGAACAATTTGCTGATGATATTGCTGAGTTGATCCGTAACCATTATCCATCCAAGGATATTCTTCTCTTTGATGATGTTTTGGCGACATTTGTCCTTCATCATCCAGAGCATGGGCATGCAGTTGTGCTTCCAATTATTTCATGTATTATTGATGGTACACTAGTCTATGATAAGGCTAGTCCTCCATTTGCTTCTTTCATATCTTCAGTCTGCCCAAAAATTGAGAATGAATACTCGGAGGAATGGGCTCTAGCATGTGGTGAAATTTTGCGCATTTTAACTCATTACAATCGCCCTATTTACAAAACAGAAAGACAATCTGGTGAAACCGAAAGAAGCACTAGTGGCAGTCATGCCACAACTAGTGAACCTGGGAAATCTGGGCATAATTCTTTGACACAGCATGAGAAGAAACCTATAAGGCCGTTGTCCCCCTGGATTACTGATATTTTGTTGGCTTCACCAGTAGGTATTCGAAGTGACTATTTCCGATGGTGCAGTGGTATTATGGGGAAATATGCTGCAGGAGAACTCAAGCCTCCATCAACCGCTTCTTCCCGTGGTTCTGGGAAGCATCCTCAACTTGTGCCTTCAACTCCAAGATGGGCTGTTGCCAATGGTGCTGGTGTTATATTAAGTGTTTGTGATGATGAAGTTGCTCGCAATGAGACTGCTACTTTAACAGCAGCTGCTGTCCCTGCGCTTTTGCTTCCTCCTCCAACGACAGCTCTGGATGAGCATCTTGTTGCTGGATTACCAGCTCTGGAACCATATGCTCGTTTATTTCATAGATATTATGCAATTGCTACTCCAAGTGCTACACAAAGACTTCTTCTTGGACTTCTAGAAGCACCCCCATCATGGGCTCCAGATGCACTTGACGCTGCTGTGCAGCTTGTGGAGCTTCTTCGAGCTGCTGAAGATTATGCATCTGGCATAAGGCTTCCTAGAAATTGGATGCATTTGCATTTCTTGCGTGCAATAGGGACTGCAATGTCCATGAGAGCTGGTATAGCCGCTGATGCTGCAGCTGCTCTTCTTTTTCGTATACTTTCCCAGCCTGCATTGCTTTTTCCTCCTCTTAGACAAGTTGACGGAGTTGAAGTTCAACATGAACCTTTGGGTGGTTATATTTCTTCCTATAAAAAGCAGATAGAAGTTCCTGCAGCTGAAGCCTCTATTGAAGCTACTGCCCAAGGCATTGCATCAATGCTTTGTGCCCATGGTCCAGAGGTTGAATGGAGAATTTGCACCATTTGGGAAGCTGCTTATGGCCTGATTCCTACAAGTTCCTCAGCTGTTGATCTTCCGGAAATTATAGTTGCAACCCCACTACAGCCTCCCGTGCTGTCATGGAATTTGTACATACCCCTATTGAAGGTCCTGGAATATCTTCCTCGTGGAAGCCCATCAGAGGCATGTCTTATGAAAATATTTGCTGCTACAGTGGAAGCTATTCTTCAGAGGACATTTCCACCTGAGTCCACTAGAGAACAAAACAGAAAATCAAAATACCTAGCTGGCATAGGCTTTGGCTCTGCCTCAAAAAACCTGGCCGTGGCAGAACTTCGTACAATGGTTCATTCACTCTTCTTAGAATCATGTGCATCTGTAGAGCTTGCTTCACGCCTACTTTTTGTTGTCTTAACTGTCTGCGTCAGTCATGAAGCTCAATTCAGTGGAAGCAAGAGGCCAAGAGGTGAAGATAACTATTCATCTGAGGATATCATTGAGGACTTACAAACATCTGAAAACCAGAAAGAATCAAAAAATAGGAAATTGAAGAAGCAAGGTCCTGTTGCAGCATTTGATTCTTATGTTCTGGCTGCCGTTTGTGCCCTTGCCTGTGAGCTTCAGTTGTTCCCTTTGATTTCACGGGGGAATAATCATTTAGCTTCCAATAAGGTGCAAGATATAGCCAAGCCTGTTAGACTAAATGGATCCTCCCATGAGTTGCGGAATGGCTTAGATTCAGCAGTACGTCATACTCACAGAATTTTAGCAATTTTAGAGGCACTATTTTCATTGAAGCCATCTTCTGTTGGAACCCCTTGGAGTTACAGCTCAAATGAGATAGTTGCAGCTGCTATGGTTGCTGCCCATGTTTCTGAACTATTTAGAAGGTCAAAAGCTTGCATGCATGCTCTGTCTGTTCTGATTCGTTGCAAATGGGACAATGAAATTCACTCCAGGGCATCATCATTGTATAATCTCATAGATATTCACAGCAAAGCTGTTGCATCTATAGTGAACAAGGCAGAGCCATTAGAAGCAACCTTAATTCATGCACCTATTCGGAAGGATTCCCTTGTTTGTGTTGGTGTTAAAAGGCAGAATCAGTGTGAAAGTAGTAGCTGTTTTGATGCTGGGCGGACATCTGTTGTACCTTCAGAAGATTCATTCCCATCAAAACTTGACCATAATTCTAACAAAACCCCATGTCCAAAGGGTGCATCAGATTATACCTTGGGTAAAGGTGTCACAGGTTTCTCATTGGATGCGTCTGATCTAGCCAACTTCCTCACAATGGACAGGCATATAGGATTGAATTGCAATGGACAAATTTTTCTAAGATCCACGCTAGCAGAGAAACAAGAATTATGTTTTTCTGTAGTTTCACTGCTATGGCACAAGCTGATTGCATCTCCTGAAACACAACCTTGTGCAGAAAGCACTTCTGCCCAACAGGGCTGGAGACAGGTTGTTGATGCATTATGCAACGTTGTATCAGCCTCACCAACAAAAGCAGCTACAGCAGTTGTACTTCAGGCGGAGCGGGAATTGCAGCCCTGGATTGCCAAGGATGATGATTCAGGTCAGAAGATGTGGAGAATCAATCAGCGGATTGTAAAATTGATTGTGGAACTTATGAGGAATCATGAGACTGCAGAATCATTGGTAATTGTGGCAAGTTCATCAGATTTACTACTGCGAGCCACAGATGGGATGCTGGTTGATGGAGAAGCTTGCACTTTACCACAGCTGGAGCTATTGGAAGCAACAGCTAGAGCAGTTCAGCCAGTGCTCGAGTTTGGAGAATCTGGATTGGCTGTGGCAGATGGCCTTTCAAACCTTTTAAAGTGTCGCCTCTCAGCTACAATTAGATGTCTTTCTCATCCAAGTGCACATGTCCGAGCTCTGAGTATATCAGTTCTTCGTGACATTTTGCATACTGGTTCAATCAGATGTAGTCCTAAACCTCGGAGATTAAATGGCACCCACAACCCTTCTTATCAATACTTCAATTTGGATGCCGTTGACTGGCAAGCTGACATAGAAAAATGCTTGACTTGGGAAGCTCACAGCCGACTTTCAAACGGATTGTCTATTAACTTTCTTGATATCGCTGCCAAAGAGTTAGGCTGTACTATTTCCATGTGA
Predicted protein sequences of Glyma10g36600
>Glyma10g36600.3   sequence type=predicted peptide   gene model=Glyma10g36600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSERWIDRLQYSSLFWPPPPDGQQRKDQIAAYVEYFIQFTSEQFADDIAELIRNHYPSKDILLFDDVLATFVLHHPEHGHAVVLPIISCIIDGTLVYDKASPPFASFISSVCPKIENEYSEEWALACGEILRILTHYNRPIYKTERQSGETERSTSGSHATTSEPGKSGHNSLTQHEKKPIRPLSPWITDILLASPVGIRSDYFRWCSGIMGKYAAGELKPPSTASSRGSGKHPQLVPSTPRWAVANGAGVILSVCDDEVARNETATLTAAAVPALLLPPPTTALDEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEDYASGIRLPRNWMHLHFLRAIGTAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISSYKKQIEVPAAEASIEATAQGIASMLCAHGPEVEWRICTIWEAAYGLIPTSSSAVDLPEIIVATPLQPPVLSWNLYIPLLKVLEYLPRGSPSEACLMKIFAATVEAILQRTFPPESTREQNRKSKYLAGIGFGSASKNLAVAELRTMVHSLFLESCASVELASRLLFVVLTVCVSHEAQFSGSKRPRGEDNYSSEDIIEDLQTSENQKESKNRKLKKQGPVAAFDSYVLAAVCALACELQLFPLISRGNNHLASNKVQDIAKPVRLNGSSHELRNGLDSAVRHTHRILAILEALFSLKPSSVGTPWSYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLIRCKWDNEIHSRASSLYNLIDIHSKAVASIVNKAEPLEATLIHAPIRKDSLVCVGVKRQNQCESSSCFDAGRTSVVPSEDSFPSKLDHNSNKTPCPKGASDYTLGKGVTGFSLDASDLANFLTMDRHIGLNCNGQIFLRSTLAEKQELCFSVVSLLWHKLIASPETQPCAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDSGQKMWRINQRIVKLIVELMRNHETAESLVIVASSSDLLLRATDGMLVDGEACTLPQLELLEATARAVQPVLEFGESGLAVADGLSNLLKCRLSATIRCLSHPSAHVRALSISVLRDILHTGSIRCSPKPRRLNGTHNPSYQYFNLDAVDWQADIEKCLTWEAHSRLSNGLSINFLDIAAKELGCTISM*






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