SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G10380 | AT | Annotation by Michelle Graham. TAIR10: NOD26-like intrinsic protein 5;1 | chr4:6431530-6434510 REVERSE LENGTH=304 | SoyBase | E_val: 2.33E-156 | ISS |
| GO:0000041 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transition metal ion transport | SoyBase | N/A | ISS |
| GO:0006810 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transport | SoyBase | N/A | ISS |
| GO:0006826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron ion transport | SoyBase | N/A | ISS |
| GO:0010036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to boron-containing substance | SoyBase | N/A | ISS |
| GO:0010106 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion starvation | SoyBase | N/A | ISS |
| GO:0010167 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to nitrate | SoyBase | N/A | ISS |
| GO:0015700 | GO-bp | Annotation by Michelle Graham. GO Biological Process: arsenite transport | SoyBase | N/A | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0046685 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to arsenic-containing substance | SoyBase | N/A | ISS |
| GO:0046713 | GO-bp | Annotation by Michelle Graham. GO Biological Process: borate transport | SoyBase | N/A | ISS |
| GO:0080029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to boron-containing substance levels | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016328 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: lateral plasma membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0015105 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: arsenite transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0015250 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: water channel activity | SoyBase | N/A | ISS |
| GO:0046715 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: borate transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG0223 | KOG | Aquaporin (major intrinsic protein family) | JGI | ISS | |
| PTHR19139 | Panther | AQUAPORIN TRANSPORTER | JGI | ISS | |
| PTHR19139:SF22 | Panther | gb def: glycerol uptake facilitator protein [mycoplasma pulmonis] | JGI | ISS | |
| PF00230 | PFAM | Major intrinsic protein | JGI | ISS | |
| UniRef100_G7IAK3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aquaporin NIP3-1 n=1 Tax=Medicago truncatula RepID=G7IAK3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C625 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C625 related cluster n=1 Tax=unknown RepID=UPI000233C625 | SoyBase | E_val: 0 | ISS |
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Glyma10g36560 not represented in the dataset |
Glyma10g36560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g31040 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g221100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g36560.1 sequence type=CDS gene model=Glyma10g36560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCGGAATCGGAGATAGGGACGCCGACGGCGGCGTCGGTGCCGGCGACGCCGGATACTCCGGGAGGACCGTTATTCACGTCGCTGCGAGTTGACTCACTGTCACATGAACGTGAGTCGTTCTCAATGGCTGGGTGCAAGTGTCTGCCGACCAAGGGCCATAGCTGCTTCACTGATTTCTCAGTTGGTGTTCCACTTCCCAATGTTTCTCTCACTCAAAAGGTTGGAGCAGAGTTTGTGGGGACTTTCATATTGATATTTGCCGCAACGGCAGGACCAATAGTGAACAACAAGTACAATGGAGTAGAGAGTCTAATGGGAAATGCAGCTTGTGCAGGGTTAACTGTGATGTTTATCATTCTGTCCATTGGCCACATCTCAGGTGCACACCTGAATCCATCCCTCACCATTGCCTTCGCGGCCTTTCGCCACTTCCCTTGGACCCATGTCCCGGCCTACATAGCAGCACAAGTCTCTGCCTCCATATGTGCATGTTATGCTCTCAAAGGTGTTTACCACCCTTTCCTCTCCGGTGGGGTCACTGTCCCCACCGTCAGCGTCGCCCAGGCTTTTGCAACCGAGTTTATCATCACTTTTATTCTCTTGTTTGTTGTCACTGCTGTCGCCACCGATACTCGTGCGGTTGGTGAATTGGCAGGTATTGCTGTTGGGGCTACAGTTTTACTCAACATTCTCATATCAGGGCCGACAAGTGGTGGTTCGATGAATCCGGTGCGCACGTTGGGTCCAGCCGTTGCAGCAGGAAATTACAAGCATATATGGATCTATTTGGTGGCACCAACGTTGGGTGCTCTCGCTGGTGCTGGTGTTTATACGCTCGTCAAGCTGCGTGACGAGGAGGCCGAACCGCCGCGACAAGTTAGAAGTTTCCGTCGCTAA
>Glyma10g36560.1 sequence type=predicted peptide gene model=Glyma10g36560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPESEIGTPTAASVPATPDTPGGPLFTSLRVDSLSHERESFSMAGCKCLPTKGHSCFTDFSVGVPLPNVSLTQKVGAEFVGTFILIFAATAGPIVNNKYNGVESLMGNAACAGLTVMFIILSIGHISGAHLNPSLTIAFAAFRHFPWTHVPAYIAAQVSASICACYALKGVYHPFLSGGVTVPTVSVAQAFATEFIITFILLFVVTAVATDTRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLVAPTLGALAGAGVYTLVKLRDEEAEPPRQVRSFRR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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