Glyma10g36420 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g36420): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g36420): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma10g36420

Feature Type:	gene_model
Chromosome:	Gm10
Start:	44582731
stop:	44588963
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g36420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G09720	AT	Annotation by Michelle Graham. TAIR10: RAB GTPase homolog G3A \| chr4:6133101-6134959 FORWARD LENGTH=206	SoyBase	E_val: 2.00E-128	ISS
GO:0006184	GO-bp	Annotation by Michelle Graham. GO Biological Process: GTP catabolic process	SoyBase	N/A	ISS
GO:0006886	GO-bp	Annotation by Michelle Graham. GO Biological Process: intracellular protein transport	SoyBase	N/A	ISS
GO:0006913	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleocytoplasmic transport	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0394	KOG	Ras-related GTPase	JGI		ISS
PTHR24073	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24073:SF260	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_C6SW30	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6SW30_SOYBN	SoyBase	E_val: 3.00E-152	ISS
UniRef100_Q40211	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RAB7A n=1 Tax=Lotus japonicus RepID=Q40211_LOTJA	SoyBase	E_val: 1.00E-143	ISS

Expression Patterns of Glyma10g36420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g36420 not represented in the dataset	Glyma10g36420 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g36420

Paralog	Evidence	Comments
Glyma20g31150	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g36420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g220100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g36420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g36420

Limit To All Plant Sequences

>Glyma10g36420.2   sequence type=transcript   gene model=Glyma10g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTTTTATAACTTTTTATGGTTTTTGGCGAAGTGGGTCGAGTACAAGAGGAACAGTGCAGAAAGCGATCGAAAATGGTGTCCCTTTTCCCCTTTTGTGCTCGTAGTTGACCGTCGAATAAAATCTAATCCCCCAAATAAATAAAGAAGCGAAACCAAACCAAACCATCGAGTGCGTTGCACCCCCACCGTAAGCACAGCTATGTCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGATAGCGGGGTTGGAAAGACCTCGTTGATGAATCAATACGTGCACAAGAAGTTTAGTCAGCAATATAAGGCTACCATTGGGGCTGATTTTGTCACCAAAGAGCTTCAGATTGATGACAGACTTGTCACTCTACAAGTGGGTTTCGTTTCCTGTTTCAACGATATGGGACACTGCTGGGCAAGAGAGATTCCAGAGTCTCGGGGTTGCATTTTACAGAGGTGCCGATTGCTGTGTTCTTGTGTATGATGTGAATGTGATGAAATCGTTTGATACCCTTGAGAACTGGCACGAGGAGTTTCTCAAACAGGCAAACCCTCCTGATCCAAGGGCATTTCCGTTTATTTTACTCGGAAACAAGATCGATATTGACGGTGGGAATAGTCGAGTGGTTTCTGAGAAGAAAGCGAAGGACTGGTGTGCCTCAAAAGGGAATATTCCCTACTTTGAAACATCTGCAAAAGAGGATTACAATGTTGATGCTGCATTCCTGTGTATTGCCAAGGCTGCTCTAGCCAATGAGCACGAACAAGACATATATTTTCAAGGGATTCCTGAGGCAGCAGTTCCAGAGAATGAGCAGAGGAGTGGATGTGCATGCTGATCTGGAGATACTGAATAATTTTTATGCATTCCCCTTAATGCTGTAGTTGAAAGTTGAAACTCTTCAAATTCTTTTTGGTCATTTAGTGCATACTGTATGTCTTGATTGTGCGAGTAAATTGTTATTGTGTACCTTGAGGTTGCCATTTTGATAAACTGTACCATTTATTGTAGTCCTGTTTTAGGAAGGACGAAGCTAGAGAATGTTGTACACGCAGGAAAAGCATGTTCCATTAATAAACCATGACCTATGAGATGAGGCATGGACCATGGAATGTTTTAAATAATTTTTGAACTTTTATCCGTTGATTGTCAATTTGAGATGCGGCATGGACCATAGAATGTTCATATTTTGTTTGAATGCTACTTAGCAGACATTAATCTTTGTTGGCGTCACATATACGGACTTTAGGGGTTCTAATAAACTATTATTCATCTATGTGATTTATTTAATATTAAATG

Coding sequences of Glyma10g36420

Limit To All Plant Sequences

>Glyma10g36420.1   sequence type=CDS   gene model=Glyma10g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTGCGCAGGCGAACCTTGCTCAAGGTCATTGTTCTCGGCGATAGCGGGGTTGGAAAGACCTCGTTGATGAATCAATACGTGCACAAGAAGTTTAGTCAGCAATATAAGGCTACCATTGGGGCTGATTTTGTCACCAAAGAGCTTCAGATTGATGACAGACTTGTCACTCTACAAATATGGGACACTGCTGGGCAAGAGAGATTCCAGAGTCTCGGGGTTGCATTTTACAGAGGTGCCGATTGCTGTGTTCTTGTGTATGATGTGAATGTGATGAAATCGTTTGATACCCTTGAGAACTGGCACGAGGAGTTTCTCAAACAGGCAAACCCTCCTGATCCAAGGGCATTTCCGTTTATTTTACTCGGAAACAAGATCGATATTGACGGTGGGAATAGTCGAGTGGTTTCTGAGAAGAAAGCGAAGGACTGGTGTGCCTCAAAAGGGAATATTCCCTACTTTGAAACATCTGCAAAAGAGGATTACAATGTTGATGCTGCATTCCTGTGTATTGCCAAGGCTGCTCTAGCCAATGAGCACGAACAAGACATATATTTTCAAGGGATTCCTGAGGCAGCAGTTCCAGAGAATGAGCAGAGGAGTGGATGTGCATGCTGA

>Glyma10g36420.2   sequence type=CDS   gene model=Glyma10g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAGACTTGTCACTCTACAAGTGGGTTTCGTTTCCTGTTTCAACGATATGGGACACTGCTGGGCAAGAGAGATTCCAGAGTCTCGGGGTTGCATTTTACAGAGGTGCCGATTGCTGTGTTCTTGTGTATGATGTGAATGTGATGAAATCGTTTGATACCCTTGAGAACTGGCACGAGGAGTTTCTCAAACAGGCAAACCCTCCTGATCCAAGGGCATTTCCGTTTATTTTACTCGGAAACAAGATCGATATTGACGGTGGGAATAGTCGAGTGGTTTCTGAGAAGAAAGCGAAGGACTGGTGTGCCTCAAAAGGGAATATTCCCTACTTTGAAACATCTGCAAAAGAGGATTACAATGTTGATGCTGCATTCCTGTGTATTGCCAAGGCTGCTCTAGCCAATGAGCACGAACAAGACATATATTTTCAAGGGATTCCTGAGGCAGCAGTTCCAGAGAATGAGCAGAGGAGTGGATGTGCATGCTGA

Predicted protein sequences of Glyma10g36420

Limit To All Plant Sequences

>Glyma10g36420.1   sequence type=predicted peptide   gene model=Glyma10g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLRRRTLLKVIVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKELQIDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDYNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC*

>Glyma10g36420.2   sequence type=predicted peptide   gene model=Glyma10g36420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDLSLYKWVSFPVSTIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDTLENWHEEFLKQANPPDPRAFPFILLGNKIDIDGGNSRVVSEKKAKDWCASKGNIPYFETSAKEDYNVDAAFLCIAKAALANEHEQDIYFQGIPEAAVPENEQRSGCAC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain