Glyma10g36370 - SoyBase

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Report for Sequence Feature Glyma10g36370

Feature Type:	gene_model
Chromosome:	Gm10
Start:	44556124
stop:	44560797
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g36370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14290	AT	Annotation by Michelle Graham. TAIR10: sphingoid base hydroxylase 2 \| chr1:4880307-4881784 REVERSE LENGTH=259	SoyBase	E_val: 1.00E-121	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0046520	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0000170	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sphingosine hydroxylase activity	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005506	GO-mf	Annotation by Michelle Graham. GO Molecular Function: iron ion binding	SoyBase	N/A	ISS
GO:0016491	GO-mf	Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity	SoyBase	N/A	ISS
KOG0874	KOG	Sphingolipid hydroxylase	JGI		ISS
PTHR11863	Panther	STEROL DESATURASE	JGI		ISS
PTHR11863:SF3	Panther	SUR2-RELATED	JGI		ISS
PF04116	PFAM	Fatty acid hydroxylase superfamily	JGI		ISS
UniRef100_B9SM94	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Sur2 hydroxylase/desaturase, putative n=1 Tax=Ricinus communis RepID=B9SM94_RICCO	SoyBase	E_val: 9.00E-157	ISS
UniRef100_I1LDA9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LDA9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g36370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g36370 not represented in the dataset	Glyma10g36370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g36370

Paralog	Evidence	Comments
Glyma20g31200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g36370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g219700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g36370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g36370

Limit To All Plant Sequences

>Glyma10g36370.2   sequence type=transcript   gene model=Glyma10g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATTTTCTTGTCTCCCTAACACGTTTATTTTCTCTCTGAGGGGAGAAGGGAGAGAAGATAAAGGGCACAAAAACAATACAAGTTAATTCAAATTTGAAATAAAAATTCGAACTTTTGAAGATCTTTGGAATCTCACAACTGTCACCACTCGCCAGTGTTTATCCATTCGGATTATTCCCTAGATCTGATCGAGCAATGCACTCAAACCGTGGGTGAAAAACCTTTTTAATCATCTGGAGTTTTGATTTTCCTTTCCAGGGAATGAAGGAAGTTGTCCAAGTTAAGATCTGGAGCTGTGATGCTGCTTTGACTTGCTGAGTTTGTTTCTGGGTTGGATTGTTTTTGCTTGAAATTGATTGACTTGTTTCCACATTTGAACTTATACAATGGTTTTCTGGGAAGGATATGTGAGCGATGAATTGATGGGCACGTTTGCACCTATCGTGCTTTATTGGGTATATGCTGGATTTTATCACTTGCTCCCACCTTTAGATAGGTATCGGTTGCATACGAGGAGAGACGAGGAAAAGAAGAATTTGGTACCCTTTTCAACAGTAGTGAAGGGTGTTTTACTTCAGCAGCTTGTTCAGGCAATTGTAGCACTCTTCTTGTTGACCACAACAGCAAATGCATCTGGTGTTATAGTGCAGCCTTCTATCCCCAAGCAAATTTTGCAAATCGCCATTGCAATGTTCGTGATGGATACATGGCAGTACTTTGTGCATCGGTACATGCATCAGAACAAGTTCTTATATCGCCATATCCACTCCCAACATCACAGACTTGTTGTTCCTTACGCAATAGGAGCCCTTTACAATCACCCCATCGAGGGTCTTCTACTTGACACTGTAGGTGGTGCCATCTCATATCTTGTCTCAGGGATGACTGCAAGAACAGCAGTTGTATTCTTCTGCTTTGCCATCGTGAAAACAGTTGATGATCACTGTGGATTGTGGTTGCCTGGCAACATCTTCCATATCTTTTTCCAGAATAACACAGCTTACCATGACATTCATCATCAACTGCAAGGGCTGAAGTACAATTATTCTCAGCCATTCTTTTCCATATGGGACAAACTTCTCGGGACATACATGCCTTTCAATCTTGTAAAGCGGCCTGAAGGGGGGTTCGAGGCAAGGCTAGCAAAGGAATAGTCACACTGTAGGCATCTGATGGCATCATTTTTCCTTAGGACCAGACCAGAGGCTTTACCACTGTAGGCATTTCTCAAGTTCATTGGAGCTTACTGGCTTTTTCAGTTCATCGTGTTACTTTAGGTTTGCCAACCCACCTTGTGTAGCATAACTATGATGATGTGATTAAGGAGTTTTTTCATTATTTATTATGAATTTATGATGTACTTAAAACACATTTTTGAAGCTGTAAGTTGCTAAAAGAGTACCGTACCGGGTTTTTACGCTGGTATTATTTGTGATTCCTACTACTGGTTCACTTGTATAATTTATTATGAATTTTTATTGTAATCCAGAACCATTGGGTTGTCGAAGATATCATTATAATCCATTTACTTTTGAATGGTTAAAAAAAGTGTTCATATATAATTTTGTCTTTG

Coding sequences of Glyma10g36370

Limit To All Plant Sequences

>Glyma10g36370.1   sequence type=CDS   gene model=Glyma10g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTCTGGGAAGGATATGTGAGCGATGAATTGATGGGCACGTTTGCACCTATCGTGCTTTATTGGGTATATGCTGGATTTTATCACTTGCTCCCACCTTTAGATAGGTATCGGTTGCATACGAGGAGAGACGAGGAAAAGAAGAATTTGGTACCCTTTTCAACAGTAGTGAAGGGTGTTTTACTTCAGCAGCTTGTTCAGGCAATTGTAGCACTCTTCTTGTTGACCACAACAGCAAATGCATCTGGTGTTATAGTGCAGCCTTCTATCCCCAAGCAAATTTTGCAAATCGCCATTGCAATGTTCGTGATGGATACATGGCAGTACTTTGTGCATCGGTACATGCATCAGAACAAGTTCTTATATCGCCATATCCACTCCCAACATCACAGACTTGTTGTTCCTTACGCAATAGGAGCCCTTTACAATCACCCCATCGAGGGTCTTCTACTTGACACTGTAGGTGGTGCCATCTCATATCTTGTCTCAGGGATGACTGCAAGAACAGCAGTTGTATTCTTCTGCTTTGCCATCGTGAAAACAGTTGATGATCACTGTGGATTGTGGTTGCCTGGCAACATCTTCCATATCTTTTTCCAGAATAACACAGCTTACCATGACATTCATCATCAACTGCAAGGGCTGAAGTACAATTATTCTCAGCCATTCTTTTCCATATGGGACAAACTTCTCGGGACATACATGCCTTTCAATCTTGTAAAGCGGCCTGAAGGGGGGTTCGAGGCAAGGCTAGCAAAGGAATAG

>Glyma10g36370.2   sequence type=CDS   gene model=Glyma10g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTTCTGGGAAGGATATGTGAGCGATGAATTGATGGGCACGTTTGCACCTATCGTGCTTTATTGGGTATATGCTGGATTTTATCACTTGCTCCCACCTTTAGATAGGTATCGGTTGCATACGAGGAGAGACGAGGAAAAGAAGAATTTGGTACCCTTTTCAACAGTAGTGAAGGGTGTTTTACTTCAGCAGCTTGTTCAGGCAATTGTAGCACTCTTCTTGTTGACCACAACAGCAAATGCATCTGGTGTTATAGTGCAGCCTTCTATCCCCAAGCAAATTTTGCAAATCGCCATTGCAATGTTCGTGATGGATACATGGCAGTACTTTGTGCATCGGTACATGCATCAGAACAAGTTCTTATATCGCCATATCCACTCCCAACATCACAGACTTGTTGTTCCTTACGCAATAGGAGCCCTTTACAATCACCCCATCGAGGGTCTTCTACTTGACACTGTAGGTGGTGCCATCTCATATCTTGTCTCAGGGATGACTGCAAGAACAGCAGTTGTATTCTTCTGCTTTGCCATCGTGAAAACAGTTGATGATCACTGTGGATTGTGGTTGCCTGGCAACATCTTCCATATCTTTTTCCAGAATAACACAGCTTACCATGACATTCATCATCAACTGCAAGGGCTGAAGTACAATTATTCTCAGCCATTCTTTTCCATATGGGACAAACTTCTCGGGACATACATGCCTTTCAATCTTGTAAAGCGGCCTGAAGGGGGGTTCGAGGCAAGGCTAGCAAAGGAATAG

Predicted protein sequences of Glyma10g36370

Limit To All Plant Sequences

>Glyma10g36370.1   sequence type=predicted peptide   gene model=Glyma10g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFWEGYVSDELMGTFAPIVLYWVYAGFYHLLPPLDRYRLHTRRDEEKKNLVPFSTVVKGVLLQQLVQAIVALFLLTTTANASGVIVQPSIPKQILQIAIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPIEGLLLDTVGGAISYLVSGMTARTAVVFFCFAIVKTVDDHCGLWLPGNIFHIFFQNNTAYHDIHHQLQGLKYNYSQPFFSIWDKLLGTYMPFNLVKRPEGGFEARLAKE*

>Glyma10g36370.2   sequence type=predicted peptide   gene model=Glyma10g36370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVFWEGYVSDELMGTFAPIVLYWVYAGFYHLLPPLDRYRLHTRRDEEKKNLVPFSTVVKGVLLQQLVQAIVALFLLTTTANASGVIVQPSIPKQILQIAIAMFVMDTWQYFVHRYMHQNKFLYRHIHSQHHRLVVPYAIGALYNHPIEGLLLDTVGGAISYLVSGMTARTAVVFFCFAIVKTVDDHCGLWLPGNIFHIFFQNNTAYHDIHHQLQGLKYNYSQPFFSIWDKLLGTYMPFNLVKRPEGGFEARLAKE*

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