Glyma10g36050 - SoyBase

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Report for Sequence Feature Glyma10g36050

Feature Type:	gene_model
Chromosome:	Gm10
Start:	44239502
stop:	44244570
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g36050

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71930	AT	Annotation by Michelle Graham. TAIR10: vascular related NAC-domain protein 7 \| chr1:27076205-27077829 FORWARD LENGTH=324	SoyBase	E_val: 9.00E-115	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007155	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell adhesion	SoyBase	N/A	ISS
GO:0007275	GO-bp	Annotation by Michelle Graham. GO Biological Process: multicellular organismal development	SoyBase	N/A	ISS
GO:0009735	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0010090	GO-bp	Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis	SoyBase	N/A	ISS
GO:0010413	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process	SoyBase	N/A	ISS
GO:0042546	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0045010	GO-bp	Annotation by Michelle Graham. GO Biological Process: actin nucleation	SoyBase	N/A	ISS
GO:0045492	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02365	PFAM	No apical meristem (NAM) protein	JGI		ISS
UniRef100_E5KUI2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor n=1 Tax=Populus trichocarpa RepID=E5KUI2_POPTR	SoyBase	E_val: 3.00E-139	ISS
UniRef100_UPI000233C4BA	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233C4BA related cluster n=1 Tax=unknown RepID=UPI000233C4BA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g36050

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g36050 not represented in the dataset	Glyma10g36050 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g36050

Paralog	Evidence	Comments
Glyma20g31551	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g36050 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g216400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g36050

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g36050

Limit To All Plant Sequences

>Glyma10g36050.2   sequence type=transcript   gene model=Glyma10g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAGATTTAATTTCAGTTGATTGAGTTGGATATATGAGTTATTATAAGTTTTTTAATTTTCACGGATAAAAAAAAAAAAGAGAACTAACACAAACTTTTATATATGCATATCAAATTGAAACGGTAACATAATGACTCCTTTTCCTTTAATTTGCTTCTTTCAGGAGAGATCATCATCAATTGACATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCCACAGAAGACGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAGCAGAATGAGTGGTACTTTTTCAGCCATAAAGACAAGAAGTATCCAACAGGGACAAGAACTAACAGGGCAACTGCTGCTGGATTCTGGAAAGCAACGGGAAGAGACAAGGCTGTTATGTCCAAAAATAGAATCATAGGAATGAGGAAGACCTTGGTGTTCTACAAAGGACGTGCTCCTAATGGAAGGAAAACAGACTGGATTATGCATGAATATAGGCATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCCAGGCTTTGACCACCCATGGTGCAGTACTAGTAGTCAACAACAACACTTTTTCAGAGACCAAATTCAAAGCTATTCATCAAGACCCTTATCAATTGCTGACATTTTGGATGAAACAAATAATGTGCCTCACCCTAATGCTGAAGGTACAAGTTTTAGTCACCCCTTCAGCTCGGATCATCAGCAACACCTGAATAATCTTCTATCAAACCAAACTGTGGCTATTATGGACAAACAACTCATTGAGCTTCCACAGCTAGATAGTCCCACTGCAAGTTTGGCAATCAAAGAATGTAACCAACAACAACATAATGGCTTAACAAATGAGGAATATTGCAGTGATGAAAGGAGTAACAATAGCAATGCACAAGGGATCGATTGGAAGAGCTTGGACAACTTGTTTGGGTCTCAATTGAGTGATAATGCAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCCCATAACCATGATCAAGCTAGTCATATCCTTGGATGCTTCCCTGATTCTTCATAATTAACTTGTGTGTCACGTACCAACCATAATCCATAGCCAAATTAATAAATAAAGTCTCTAAGTAAGATATGATGGATATATAATATTCATTATATCATAGTTTTCCATTTATCTTACCATAAGCTAATTTAGAAGTTGTTGCTGGGAGATTGAATATTACCAAAAAGCTTTTTAGGTGATGATGATATTATATATATTTTTACGTGATAAAGGAGATTTGCTTGAAGAGTGAATCTCTGATCCTTTGTATTAGAGTTCAGAAGATCATAAGCCTTTTCTTTTTTTCTTTTATGGGTATAAGCATAACTTTTTACTGTCCTACCTTGGTTATGTCACTTATAAATGTACATTCTCTTTATTACATGCATAGTGTGG

>Glyma10g36050.3   sequence type=transcript   gene model=Glyma10g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAGTTATATATACATCATCATCATCATTACTTCTAAATATCTCATCCCTAGAGTTATTTTTAGAGCTAGTATAAGCTTGTAACCTATTATGACTTTGATGAAGAGCAACGCATAACCAATGGCCACTGAATTTTTTTCCTTATCTTCCAGTGCTGCCTTTACTCTTAGGCCTTGGCCAAAAGAATGAGAGAGATCATCATCAATTGACATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCCACAGAAGACGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAGCAGAATGAGTGGTACTTTTTCAGCCATAAAGACAAGAAGTATCCAACAGGGACAAGAACTAACAGGGCAACTGCTGCTGGATTCTGGAAAGCAACGGGAAGAGACAAGGCTGTTATGTCCAAAAATAGAATCATAGGAATGAGGAAGACCTTGGTGTTCTACAAAGGACGTGCTCCTAATGGAAGGAAAACAGACTGGATTATGCATGAATATAGGCATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCCAGGCTTTGACCACCCATGGTGCAGTACTAGTAGTCAACAACAACACTTTTTCAGAGACCAAATTCAAAGCTATTCATCAAGACCCTTATCAATTGCTGACATTTTGGATGAAACAAATAATGTGCCTCACCCTAATGCTGAAGGTACAAGTTTTAGTCACCCCTTCAGCTCGGATCATCAGCAACACCTGAATAATCTTCTATCAAACCAAACTGTGGCTATTATGGACAAACAACTCATTGAGCTTCCACAGCTAGATAGTCCCACTGCAAGTTTGGCAATCAAAGAATGTAACCAACAACAACATAATGGCTTAACAAATGAGGAATATTGCAGTGATGAAAGGAGTAACAATAGCAATGCACAAGGGATCGATTGGAAGAGCTTGGACAACTTGTTTGGGTCTCAATTGAGTGATAATGCAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCCCATAACCATGATCAAGCTAGTCATATCCTTGGATGCTTCCCTGATTCTTCATAATTAACTTGTGTGTCACGTACCAACCATAATCCATAGCCAAATTAATAAATAAAGTCTCTAAGTAAGATATGATGGATATATAATATTCATTATATCATAGTTTTCCATTTATCTTACCATAAGCTAATTTAGAAGTTGTTGCTGGGAGATTGAATATTACCAAAAAGCTTTTTAGGTGATGATGATATTATATATATTTTTACGTGATAAAGGAGATTTGCTTGAAGAGTGAATCTCTGATCCTTTGTATTAGAGTTCAGAAGATCATAAGCCTTTTCTTTTTTTCTTTTATGGGTATAAGCATAACTTTTTACTGTCCTACCTTGGTTATGTCACTTATAAATGTACATTCTCTTTATTACATGCATAGTGTGG

Coding sequences of Glyma10g36050

Limit To All Plant Sequences

>Glyma10g36050.1   sequence type=CDS   gene model=Glyma10g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCATTAACCCAAATTCCTGAGAGATCATCATCAATTGACATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCCACAGAAGACGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAGCAGAATGAGTGGTACTTTTTCAGCCATAAAGACAAGAAGTATCCAACAGGGACAAGAACTAACAGGGCAACTGCTGCTGGATTCTGGAAAGCAACGGGAAGAGACAAGGCTGTTATGTCCAAAAATAGAATCATAGGAATGAGGAAGACCTTGGTGTTCTACAAAGGACGTGCTCCTAATGGAAGGAAAACAGACTGGATTATGCATGAATATAGGCATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCCAGGCTTTGACCACCCATGGTGCAGTACTAGTAGTCAACAACAACACTTTTTCAGAGACCAAATTCAAAGCTATTCATCAAGACCCTTATCAATTGCTGACATTTTGGATGAAACAAATAATGTGCCTCACCCTAATGCTGAAGGTACAAGTTTTAGTCACCCCTTCAGCTCGGATCATCAGCAACACCTGAATAATCTTCTATCAAACCAAACTGTGGCTATTATGGACAAACAACTCATTGAGCTTCCACAGCTAGATAGTCCCACTGCAAGTTTGGCAATCAAAGAATGTAACCAACAACAACATAATGGCTTAACAAATGAGGAATATTGCAGTGATGAAAGGAGTAACAATAGCAATGCACAAGGGATCGATTGGAAGAGCTTGGACAACTTGTTTGGGTCTCAATTGAGTGATAATGCAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCCCATAACCATGATCAAGCTAGTCATATCCTTGGATGCTTCCCTGATTCTTCATAA

>Glyma10g36050.2   sequence type=CDS   gene model=Glyma10g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTCCTTTTCCTTTAATTTGCTTCTTTCAGGAGAGATCATCATCAATTGACATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCCACAGAAGACGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAGCAGAATGAGTGGTACTTTTTCAGCCATAAAGACAAGAAGTATCCAACAGGGACAAGAACTAACAGGGCAACTGCTGCTGGATTCTGGAAAGCAACGGGAAGAGACAAGGCTGTTATGTCCAAAAATAGAATCATAGGAATGAGGAAGACCTTGGTGTTCTACAAAGGACGTGCTCCTAATGGAAGGAAAACAGACTGGATTATGCATGAATATAGGCATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCCAGGCTTTGACCACCCATGGTGCAGTACTAGTAGTCAACAACAACACTTTTTCAGAGACCAAATTCAAAGCTATTCATCAAGACCCTTATCAATTGCTGACATTTTGGATGAAACAAATAATGTGCCTCACCCTAATGCTGAAGGTACAAGTTTTAGTCACCCCTTCAGCTCGGATCATCAGCAACACCTGAATAATCTTCTATCAAACCAAACTGTGGCTATTATGGACAAACAACTCATTGAGCTTCCACAGCTAGATAGTCCCACTGCAAGTTTGGCAATCAAAGAATGTAACCAACAACAACATAATGGCTTAACAAATGAGGAATATTGCAGTGATGAAAGGAGTAACAATAGCAATGCACAAGGGATCGATTGGAAGAGCTTGGACAACTTGTTTGGGTCTCAATTGAGTGATAATGCAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCCCATAACCATGATCAAGCTAGTCATATCCTTGGATGCTTCCCTGATTCTTCATAA

>Glyma10g36050.3   sequence type=CDS   gene model=Glyma10g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCATGTGTGCCTCCAGGATTTAGATTTCATCCCACAGAAGACGAGCTTGTGGGGTATTACCTCAAGAGGAAGATAAACTCGCTAAAAATCGATCTAGATGTTATTGTTGAGATTGATCTCTACAAAATGGAACCATGGGACATACAAGATAGGTGCAAGCTAGGATATGAGCAGCAGAATGAGTGGTACTTTTTCAGCCATAAAGACAAGAAGTATCCAACAGGGACAAGAACTAACAGGGCAACTGCTGCTGGATTCTGGAAAGCAACGGGAAGAGACAAGGCTGTTATGTCCAAAAATAGAATCATAGGAATGAGGAAGACCTTGGTGTTCTACAAAGGACGTGCTCCTAATGGAAGGAAAACAGACTGGATTATGCATGAATATAGGCATCAAACTTCTGAACATGGCCCTCCACAGGAAGAAGGATGGGTTGTGTGCCGAGCATTTCGAAAGCCTAGTCCAAGTCACAGGCCAGGCTTTGACCACCCATGGTGCAGTACTAGTAGTCAACAACAACACTTTTTCAGAGACCAAATTCAAAGCTATTCATCAAGACCCTTATCAATTGCTGACATTTTGGATGAAACAAATAATGTGCCTCACCCTAATGCTGAAGGTACAAGTTTTAGTCACCCCTTCAGCTCGGATCATCAGCAACACCTGAATAATCTTCTATCAAACCAAACTGTGGCTATTATGGACAAACAACTCATTGAGCTTCCACAGCTAGATAGTCCCACTGCAAGTTTGGCAATCAAAGAATGTAACCAACAACAACATAATGGCTTAACAAATGAGGAATATTGCAGTGATGAAAGGAGTAACAATAGCAATGCACAAGGGATCGATTGGAAGAGCTTGGACAACTTGTTTGGGTCTCAATTGAGTGATAATGCAGCTTATTTTTCACATCCAAACTTGCCCTTGATGATGCCCCATAACCATGATCAAGCTAGTCATATCCTTGGATGCTTCCCTGATTCTTCATAA

Predicted protein sequences of Glyma10g36050

Limit To All Plant Sequences

>Glyma10g36050.1   sequence type=predicted peptide   gene model=Glyma10g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLTQIPERSSSIDMESCVPPGFRFHPTEDELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRPGFDHPWCSTSSQQQHFFRDQIQSYSSRPLSIADILDETNNVPHPNAEGTSFSHPFSSDHQQHLNNLLSNQTVAIMDKQLIELPQLDSPTASLAIKECNQQQHNGLTNEEYCSDERSNNSNAQGIDWKSLDNLFGSQLSDNAAYFSHPNLPLMMPHNHDQASHILGCFPDSS*

>Glyma10g36050.2   sequence type=predicted peptide   gene model=Glyma10g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTPFPLICFFQERSSSIDMESCVPPGFRFHPTEDELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRPGFDHPWCSTSSQQQHFFRDQIQSYSSRPLSIADILDETNNVPHPNAEGTSFSHPFSSDHQQHLNNLLSNQTVAIMDKQLIELPQLDSPTASLAIKECNQQQHNGLTNEEYCSDERSNNSNAQGIDWKSLDNLFGSQLSDNAAYFSHPNLPLMMPHNHDQASHILGCFPDSS*

>Glyma10g36050.3   sequence type=predicted peptide   gene model=Glyma10g36050   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESCVPPGFRFHPTEDELVGYYLKRKINSLKIDLDVIVEIDLYKMEPWDIQDRCKLGYEQQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKNRIIGMRKTLVFYKGRAPNGRKTDWIMHEYRHQTSEHGPPQEEGWVVCRAFRKPSPSHRPGFDHPWCSTSSQQQHFFRDQIQSYSSRPLSIADILDETNNVPHPNAEGTSFSHPFSSDHQQHLNNLLSNQTVAIMDKQLIELPQLDSPTASLAIKECNQQQHNGLTNEEYCSDERSNNSNAQGIDWKSLDNLFGSQLSDNAAYFSHPNLPLMMPHNHDQASHILGCFPDSS*

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