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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G34430 | AT | Annotation by Michelle Graham. TAIR10: 2-oxoacid dehydrogenases acyltransferase family protein | chr1:12588027-12590084 REVERSE LENGTH=465 | SoyBase | E_val: 0 | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0022626 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome | SoyBase | N/A | ISS |
| GO:0004742 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dihydrolipoyllysine-residue acetyltransferase activity | SoyBase | N/A | ISS |
| GO:0016746 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring acyl groups | SoyBase | N/A | ISS |
| KOG0557 | KOG | Dihydrolipoamide acetyltransferase | JGI | ISS | |
| PTHR23151 | Panther | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED | JGI | ISS | |
| PTHR23151:SF31 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00198 | PFAM | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) | JGI | ISS | |
| PF00364 | PFAM | Biotin-requiring enzyme | JGI | ISS | |
| PF02817 | PFAM | e3 binding domain | JGI | ISS | |
| UniRef100_I1LD65 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LD65_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8LGH6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dihydrolipoamide S-acetyltransferase, putative n=1 Tax=Arabidopsis thaliana RepID=Q8LGH6_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma10g35960 not represented in the dataset |
Glyma10g35960 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g31630 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g215400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35960.2 sequence type=transcript gene model=Glyma10g35960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATAATAGTATTAGTGAGAGAGTAACAGGATCCAAATCAAAATGTTAGAGATGACCCATTATGGACTATGGTCCAGAACAGTGAATAGACGTTAGTTACATTGAGCGCTATGATGGTTGGAGTTGGAACCTCCGTCTTCTTTCGATGAATTCGAGGAAATCCTTTTATACTTAATTAACACTTAACAAACACACAATCTCATTTTGTTTCTCTTCAATCCAAACGCATTCACATTCACATTCAATCAATGATGGCTCAGCTTCTCCACACTCCCTTCATCCCTTCCTCCTCCTCCGCGCTCCGCCGCGCCGCCACCATTCCCCACCGCAAAACGACCTCTCGCCTCGTCGTTCGGGCCAAGATCCGGGAGATTTTCATGCCGGCACTGAGCTCCACCATGACCGAGGGCAAAATCGTCTCCTGGACCAAATCCGAAGGCGACAAGCTCTCCAAGGGCGACAGCGTCGTCGTCGTCGAGTCCGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCTACCTCGCCGCCATCGTCGTCGAGGAAGGCGGCGTCGCCGCCGTCGGATCCCCCATCGCATTCCTTGCCGAGACCGAGGACGAGATTCCTCAAGCCAAGTCCAAAGCCTCTTCTTCTTCCTCTTCCTCTTCCGCACCTGCACCAGCACCAGCACCAGCACCAGCACCAGCACAAGCACCGCCAGTGGAATCTCAACCGGAAAAGGTTGCGGCGCCAGTCGCAGCTGCGGTTTCAGCTCCGGTCATTGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCTAAAGATGTTGAGGCATTTGCGGCGGCAGGTAATGTTGCAGCGGCAGCACCGGCACCGGGGAAGAGTGCAGCACCTGCCGGGATGGAGTTGGGATCCGTGGTGCCTTTCACCACAATGCAGAGTGCTGTGAGTAGGAACATGCTGGAGAGTTTGGCGGTTCCCACTTTCAGAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCACTTGCGCTGGTTAAACACCCTGTTATGAACTCTAGTTGTAGAGATGGTAATAGCTTTACATATAATAGCAGCATCAATATTGCTGTTGCTGTGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTGGTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTGTGAGTGTTTTACTCGTGCTCAAATATGGCAAGAGATTGACTAGTTGTTCCAATTAGAAGTTTAGAACAGTGATGGGAAACACGAATATGATCCTTCTCTGGATATATTTCTGTAGGGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAGGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGACCCAGATTATTGAGGACCCCAAAGATCTTACTTTCTAGTCTCATTTTCCTAACAGTGAAAATGCGTTCCTTTTCTGGGTATGATTCCTCTCATCATGGTTGTGGGATTATTAATTGTTGACAAGAAGAAATCGAGGACTCAATTGATATTCACTCGGGATTTTGCGAAGAACGGAAGAGTTTTGAATAGGAAAAGCTGAGCTATAGTTTCTTAAAATGATATTTTTAGTCGAATATGTCATTTACATTTTTCTTTAATGCTGCCTGATTTTTTTTATTTTGTTTTTTGGGATGTTCATTATTGTCTAATAATGTCCATTATTTATGTAAGCTTATTTTTGGATTCTAAATCTTGAAAAGTGAAACTCAATGAACGTTGATTCTGTTATGGAACCAGGAAAGGTTAGTGATAAAGAAAATTGGTGCTCCAATATGATTGTCAAAACATATTAATTCGATGGCAAAGACTAATAAAAGAGTAAATACGCATTCAATCTGGTTGCACTTAATCGAGGGA
>Glyma10g35960.1 sequence type=CDS gene model=Glyma10g35960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGCTCAGCTTCTCCACACTCCCTTCATCCCTTCCTCCTCCTCCGCGCTCCGCCGCGCCGCCACCATTCCCCACCGCAAAACGACCTCTCGCCTCGTCGTTCGGGCCAAGATCCGGGAGATTTTCATGCCGGCACTGAGCTCCACCATGACCGAGGGCAAAATCGTCTCCTGGACCAAATCCGAAGGCGACAAGCTCTCCAAGGGCGACAGCGTCGTCGTCGTCGAGTCCGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCTACCTCGCCGCCATCGTCGTCGAGGAAGGCGGCGTCGCCGCCGTCGGATCCCCCATCGCATTCCTTGCCGAGACCGAGGACGAGATTCCTCAAGCCAAGTCCAAAGCCTCTTCTTCTTCCTCTTCCTCTTCCGCACCTGCACCAGCACCAGCACCAGCACCAGCACCAGCACAAGCACCGCCAGTGGAATCTCAACCGGAAAAGGTTGCGGCGCCAGTCGCAGCTGCGGTTTCAGCTCCGGTCATTGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCTAAAGATGTTGAGGCATTTGCGGCGGCAGGTAATGTTGCAGCGGCAGCACCGGCACCGGGGAAGAGTGCAGCACCTGCCGGGATGGAGTTGGGATCCGTGGTGCCTTTCACCACAATGCAGAGTGCTGTGAGTAGGAACATGCTGGAGAGTTTGGCGGTTCCCACTTTCAGAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCACTTGCGCTGGTTAAACACCCTGTTATGAACTCTAGTTGTAGAGATGGTAATAGCTTTACATATAATAGCAGCATCAATATTGCTGTTGCTGTGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTGGTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTGGAGCAATAATGGCTGTTGGAGCATCGGAGCCCACTGTTGTGGCTACAAAGGATGGTCGCATTGGAATGAAGAACCAAATGCAGGTCAATGTTACCGCTGATCATCGAGTAATCTATGGTGCTGATTTGGCTTCATTCTTGCAAACCCTGACCCAGATTATTGAGGACCCCAAAGATCTTACTTTCTAG >Glyma10g35960.2 sequence type=CDS gene model=Glyma10g35960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGATGGCTCAGCTTCTCCACACTCCCTTCATCCCTTCCTCCTCCTCCGCGCTCCGCCGCGCCGCCACCATTCCCCACCGCAAAACGACCTCTCGCCTCGTCGTTCGGGCCAAGATCCGGGAGATTTTCATGCCGGCACTGAGCTCCACCATGACCGAGGGCAAAATCGTCTCCTGGACCAAATCCGAAGGCGACAAGCTCTCCAAGGGCGACAGCGTCGTCGTCGTCGAGTCCGACAAGGCCGACATGGACGTCGAGACCTTCTACGACGGCTACCTCGCCGCCATCGTCGTCGAGGAAGGCGGCGTCGCCGCCGTCGGATCCCCCATCGCATTCCTTGCCGAGACCGAGGACGAGATTCCTCAAGCCAAGTCCAAAGCCTCTTCTTCTTCCTCTTCCTCTTCCGCACCTGCACCAGCACCAGCACCAGCACCAGCACCAGCACAAGCACCGCCAGTGGAATCTCAACCGGAAAAGGTTGCGGCGCCAGTCGCAGCTGCGGTTTCAGCTCCGGTCATTGCGTCCAGTCATCCTGCTTCGGAGGGAGGGAAGAGGACTGTTGCTTCACCTTATGCGAAGAAGCTTGCCAAGGAGTTGAAGGTGGAGTTGGGGAGGATTGTGGGGACTGGACCGATGGGGAGGATTGTGGCTAAAGATGTTGAGGCATTTGCGGCGGCAGGTAATGTTGCAGCGGCAGCACCGGCACCGGGGAAGAGTGCAGCACCTGCCGGGATGGAGTTGGGATCCGTGGTGCCTTTCACCACAATGCAGAGTGCTGTGAGTAGGAACATGCTGGAGAGTTTGGCGGTTCCCACTTTCAGAGTTGGTTACACCATCACCACGGATGCACTCGATGCCTTGTACAAGAAGATCAAGTCAAAGGGAGTCACAATGACAGCATTGCTTGCTAAGGCTACTGCACTTGCGCTGGTTAAACACCCTGTTATGAACTCTAGTTGTAGAGATGGTAATAGCTTTACATATAATAGCAGCATCAATATTGCTGTTGCTGTGGCTATAGATGGCGGATTGATTACACCAGTGCTTCAGGGTGCTGATAAGATTGATGTCTATTCATTGTCAAGAAAGTGGAAGGAGTTGGTTGACAAGGCCAGAGCGAAGCAGCTTCAACCTCATGAATACAACACTGGTACTTTCACTCTGTCCAATCTGGGAATGTTTGGTGTTGATCGCTTTGATGCTATTCTGCCACCTGGAACTGTGAGTGTTTTACTCGTGCTCAAATATGGCAAGAGATTGACTAGTTGTTCCAATTAG
>Glyma10g35960.1 sequence type=predicted peptide gene model=Glyma10g35960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMAQLLHTPFIPSSSSALRRAATIPHRKTTSRLVVRAKIREIFMPALSSTMTEGKIVSWTKSEGDKLSKGDSVVVVESDKADMDVETFYDGYLAAIVVEEGGVAAVGSPIAFLAETEDEIPQAKSKASSSSSSSSAPAPAPAPAPAPAQAPPVESQPEKVAAPVAAAVSAPVIASSHPASEGGKRTVASPYAKKLAKELKVELGRIVGTGPMGRIVAKDVEAFAAAGNVAAAAPAPGKSAAPAGMELGSVVPFTTMQSAVSRNMLESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVKHPVMNSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQGADKIDVYSLSRKWKELVDKARAKQLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTGAIMAVGASEPTVVATKDGRIGMKNQMQVNVTADHRVIYGADLASFLQTLTQIIEDPKDLTF* >Glyma10g35960.2 sequence type=predicted peptide gene model=Glyma10g35960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MMAQLLHTPFIPSSSSALRRAATIPHRKTTSRLVVRAKIREIFMPALSSTMTEGKIVSWTKSEGDKLSKGDSVVVVESDKADMDVETFYDGYLAAIVVEEGGVAAVGSPIAFLAETEDEIPQAKSKASSSSSSSSAPAPAPAPAPAPAQAPPVESQPEKVAAPVAAAVSAPVIASSHPASEGGKRTVASPYAKKLAKELKVELGRIVGTGPMGRIVAKDVEAFAAAGNVAAAAPAPGKSAAPAGMELGSVVPFTTMQSAVSRNMLESLAVPTFRVGYTITTDALDALYKKIKSKGVTMTALLAKATALALVKHPVMNSSCRDGNSFTYNSSINIAVAVAIDGGLITPVLQGADKIDVYSLSRKWKELVDKARAKQLQPHEYNTGTFTLSNLGMFGVDRFDAILPPGTVSVLLVLKYGKRLTSCSN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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