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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G09510 | AT | Annotation by Michelle Graham. TAIR10: cytosolic invertase 2 | chr4:6021312-6023310 REVERSE LENGTH=558 | SoyBase | E_val: 0 | ISS |
| GO:0005987 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sucrose catabolic process | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0048364 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root development | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004564 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: beta-fructofuranosidase activity | SoyBase | N/A | ISS |
| PF04853 | PFAM | Plant neutral invertase | JGI | ISS | |
| UniRef100_G7IAG4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Neutral invertase-like protein n=1 Tax=Medicago truncatula RepID=G7IAG4_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LD52 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LD52_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g35890 not represented in the dataset |
Glyma10g35890 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g31730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g214700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35890.4 sequence type=transcript gene model=Glyma10g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AAATACACACATGCCACGATACAATCTCCCATTCCCAACTTTTGAATTCACAATATCGGAGGAAAGAAGAGGGGAAAGTGTGGGAGAGATCTCATTCGGAGAAACGGCGTGTTTCGCCCACGTGGACGGTGTTGCTACCCCCTCGTCCTACTACCGGCTGCTACCGGTAAAACCTCTTACACGGTATCGAACTGTCAGAAATAGAAATAAAAATAAAAATAAAAATAAATTAAAGAAAATAGAAAAGCGGGGTAGGACGGTACGGTCCGTTGGTTGCACTCTCTCCAGGACAGCCTTTCTACCGTTCTTCTCCTTCTATAAATAGCAGCTTCTGAGAAATAGCTCATTTTTTTCTTTCTCTTTCTCTCCGTTTTGCCATTCTCTCCGCGCCCCGTTTTCCGGCGAAATCGCCGGCGAGTCACCGTCGTTTCCGCCGGACACTCTCTTCCCCCGTCGCCGTCCTCCTTCAGATAGTATCTATTTTTGATATAATCGTTCCGTTATTAGAGAAGTTGAGAAAATGGACGGCCATATGGGAATGAGGAAAATCAGTTCTCACTGCTCTATCCCTGATTTGGATGATTCCGATCTCTTACGTTTGCTTGAGAAACCAAAGTTGAACATTGAGAGACAGAGATCGTTTGATGAGAGGTCACTCAGTGAACTCTCCATTGGTCTTGCGAGAGCGGGCTTGGATAACTATGACACTTATTCGCCAGGGGGAAGATCTGGTTTTAACACACCTGCTTCGTCTACACGGAACTCGTTTGAGCCTCACCCCATGGTCGCCGATGCCTGGGAATCCCTCAGAAAATCTCTAGTCTATTTTAGAGGCCAACCGGTTGGCACAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAGGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGTGAACCAGAGATAGTCAGGAACTTCTTGTTGAAGACACTGCATCTTCAGGGGTGGGAAAAAAGAGTAGATCGGTTTAAGCTTGGTGAAGGTGTGATGCCAGCTAGTTTCAAAGTCCTTCATGATCCCATTAGGAAAACAGACACTCTTATTGCAGATTTTGGTGAAAGTGCAATTGGAAGAGTTGCTCCAGTTGATTCTGGATTCTGGTGGATCATTTTACTTCGTGCGTACACGAAGTCCACAGGGGATTTATCTTTAGCTGAATCACCAGATTGTCAAAAGGGAATGAAACTTATACTGACTCTATGCTTGTCAGAGGGTTTTGATACATTTCCAACTTTGCTTTGTGCTGATGGATGTTGCATGGTTGATCGAAGAATGGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGAGATGTGCTTTGTCAATGCTGAAACAGGATGACGCCGAAGGGAAGGAATGTGTTGAGCGTATTGTGAAGCGTTTGCATGCACTAAGTTATCATATGCGGAGTTACTTTTGGCTCGACTTCCAACAACTAAATGACATTTATCGATATAAGACTGAGGAGTACTCACATACTGCTGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGATTGGGTATTTGACTTTATGCCAATGCGCGGGGGCTACTTCATTGGAAATGTTAGTCCAGCCCGGATGGATTTTCGATGGTTTGCTTTAGGAAATTGTGTTGCAATTCTATCTTCTCTGGCAACTCCCGAGCAATCAATGGCTATCATGGATCTTATTGAATCTCGCTGGGATGAATTAGTTGGAGAAATGCCCCTAAAAATATCCTATCCGGCAATAGAGAGCCATGAGTGGCAAATTGTGACTGGTTGTGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGTAGACCACAGATCGCAAGACGTGCGATCGAACTTGCTGAGAGTCGTTTACTGAAGGATGGGTGGCCCGAATATTATGATGGTAAACTTGGGAGATATATTGGCAAACAGGCAAGAAAATACCAAACATGGTCTATTGCAGGTTATCTGGTTGCAAAGATGATGCTGGAGGACCCCTCACACTTGGGGATGATTTCCCTTGAAGAGGACAAACAGATGAAACCGGTTATTAAAAGATCATCTTCTTGGACTTGCTAAATTCAGGTGATAGATAAATAGTATAAAAAACAAATAGCGAAAAACTTAGAAGGTGAGAGATATTGTTGTTTTCAATACACGGCACTATTCTTGGTGATTCCCTTCCTCGTAGGCTTGATTGAAAGTTTGGCTTGTGTAAAATAGCTGCTGCTGAGACTGGCATCGTGCTTTTCCCAAATAAGTAAAAAGACACTTCAGTTCATGTTTGCTAAGTTCAATGCTACCCGTCCCACTTGTTGCGTGGGATTTAATTAGTAAGAAGAGAAATTATGAAACATTCTTCATTTTTATTGTGTTTCCTAGTTGTCAATAAGGCTTCTTTGAAAAAGGGCCTAGAACAGAAAGTATTAGCTTTTTCATATGGAACTTTAGGTCTACTGTCCACATTGCTAAAAAAATATGGTAAATTATGATTATTTTTACTAATTTTCGTGAATACAGTGTACTTTTCATTGAGTTTTTTTGGCTTT
>Glyma10g35890.3 sequence type=CDS gene model=Glyma10g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGGCCATATGGGAATGAGGAAAATCAGTTCTCACTGCTCTATCCCTGATTTGGATGATTCCGATCTCTTACGTTTGCTTGAGAAACCAAAGTTGAACATTGAGAGACAGAGATCGTTTGATGAGAGGTCACTCAGTGAACTCTCCATTGGTCTTGCGAGAGCGGGCTTGGATAACTATGACACTTATTCGCCAGGGGGAAGATCTGGTTTTAACACACCTGCTTCGTCTACACGGAACTCGTTTGAGCCTCACCCCATGGTCGCCGATGCCTGGGAATCCCTCAGAAAATCTCTAGTCTATTTTAGAGGCCAACCGGTTGGCACAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAGGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGTGAACCAGAGATAGTCAGGAACTTCTTGTTGAAGACACTGCATCTTCAGGGGTGGGAAAAAAGAGTAGATCGGTTTAAGCTTGGTGAAGGTGTGATGCCAGCTAGTTTCAAAGTCCTTCATGATCCCATTAGGAAAACAGACACTCTTATTGCAGATTTTGGTGAAAGTGCAATTGGAAGAGTTGCTCCAGTTGATTCTGGATTCTGGTGGATCATTTTACTTCGTGCGTACACGAAGTCCACAGGGGATTTATCTTTAGCTGAATCACCAGATTGTCAAAAGGGAATGAAACTTATACTGACTCTATGCTTGTCAGAGGGTTTTGATACATTTCCAACTTTGCTTTGTGCTGATGGATGTTGCATGGTTGATCGAAGAATGGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGAGATGTGCTTTGTCAATGCTGAAACAGGATGACGCCGAAGGGAAGGAATGTGTTGAGCGTATTGTGAAGCGTTTGCATGCACTAAGTTATCATATGCGGAGTTACTTTTGGCTCGACTTCCAACAACTAAATGACATTTATCGATATAAGACTGAGGAGTACTCACATACTGCTGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGATTGGGTATTTGACTTTATGCCAATGCGCGGGGGCTACTTCATTGGAAATGTTAGTCCAGCCCGGATGGATTTTCGATGGTTTGCTTTAGGAAATTGTGTTGCAATTCTATCTTCTCTGGCAACTCCCGAGCAATCAATGGCTATCATGGATCTTATTGAATCTCGCTGGGATGAATTAGTTGGAGAAATGCCCCTAAAAATATCCTATCCGGCAATAGAGAGCCATGAGTGGCAAATTGTGACTGGTTGTGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGTAGACCACAGATCGCAAGACGTGCGATCGAACTTGCTGAGAGTCGTTTACTGAAGGATGGGTGGCCCGAATATTATGATGGTAAACTTGGGAGATATATTGGCAAACAGGCAAGAAAATACCAAACATGGTCTATTGCAGGTTATCTGGTTGCAAAGATGATGCTGGAGGACCCCTCACACTTGGGGATGATTTCCCTTGAAGAGGACAAACAGATGAAACCGGTTATTAAAAGATCATCTTCTTGGACTTGCTAA >Glyma10g35890.4 sequence type=CDS gene model=Glyma10g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGGCCATATGGGAATGAGGAAAATCAGTTCTCACTGCTCTATCCCTGATTTGGATGATTCCGATCTCTTACGTTTGCTTGAGAAACCAAAGTTGAACATTGAGAGACAGAGATCGTTTGATGAGAGGTCACTCAGTGAACTCTCCATTGGTCTTGCGAGAGCGGGCTTGGATAACTATGACACTTATTCGCCAGGGGGAAGATCTGGTTTTAACACACCTGCTTCGTCTACACGGAACTCGTTTGAGCCTCACCCCATGGTCGCCGATGCCTGGGAATCCCTCAGAAAATCTCTAGTCTATTTTAGAGGCCAACCGGTTGGCACAATTGCAGCTGTTGATCATCAATCAGAGGAAGTTCTAAACTATGATCAGGTTTTTGTTCGTGATTTTGTGCCCAGTGCTCTAGCCTTTTTGATGAATGGTGAACCAGAGATAGTCAGGAACTTCTTGTTGAAGACACTGCATCTTCAGGGGTGGGAAAAAAGAGTAGATCGGTTTAAGCTTGGTGAAGGTGTGATGCCAGCTAGTTTCAAAGTCCTTCATGATCCCATTAGGAAAACAGACACTCTTATTGCAGATTTTGGTGAAAGTGCAATTGGAAGAGTTGCTCCAGTTGATTCTGGATTCTGGTGGATCATTTTACTTCGTGCGTACACGAAGTCCACAGGGGATTTATCTTTAGCTGAATCACCAGATTGTCAAAAGGGAATGAAACTTATACTGACTCTATGCTTGTCAGAGGGTTTTGATACATTTCCAACTTTGCTTTGTGCTGATGGATGTTGCATGGTTGATCGAAGAATGGGTATTTATGGTTATCCAATAGAGATTCAAGCACTTTTCTTCATGGCATTGAGATGTGCTTTGTCAATGCTGAAACAGGATGACGCCGAAGGGAAGGAATGTGTTGAGCGTATTGTGAAGCGTTTGCATGCACTAAGTTATCATATGCGGAGTTACTTTTGGCTCGACTTCCAACAACTAAATGACATTTATCGATATAAGACTGAGGAGTACTCACATACTGCTGTAAATAAGTTTAATGTTATTCCTGATTCAATCCCAGATTGGGTATTTGACTTTATGCCAATGCGCGGGGGCTACTTCATTGGAAATGTTAGTCCAGCCCGGATGGATTTTCGATGGTTTGCTTTAGGAAATTGTGTTGCAATTCTATCTTCTCTGGCAACTCCCGAGCAATCAATGGCTATCATGGATCTTATTGAATCTCGCTGGGATGAATTAGTTGGAGAAATGCCCCTAAAAATATCCTATCCGGCAATAGAGAGCCATGAGTGGCAAATTGTGACTGGTTGTGATCCCAAAAATACCAGATGGAGTTACCATAATGGAGGATCTTGGCCAGTGCTCCTGTGGCTAGTAACAGCTGCTTGTATCAAAACGGGTAGACCACAGATCGCAAGACGTGCGATCGAACTTGCTGAGAGTCGTTTACTGAAGGATGGGTGGCCCGAATATTATGATGGTAAACTTGGGAGATATATTGGCAAACAGGCAAGAAAATACCAAACATGGTCTATTGCAGGTTATCTGGTTGCAAAGATGATGCTGGAGGACCCCTCACACTTGGGGATGATTTCCCTTGAAGAGGACAAACAGATGAAACCGGTTATTAAAAGATCATCTTCTTGGACTTGCTAA
>Glyma10g35890.3 sequence type=predicted peptide gene model=Glyma10g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDGHMGMRKISSHCSIPDLDDSDLLRLLEKPKLNIERQRSFDERSLSELSIGLARAGLDNYDTYSPGGRSGFNTPASSTRNSFEPHPMVADAWESLRKSLVYFRGQPVGTIAAVDHQSEEVLNYDQVFVRDFVPSALAFLMNGEPEIVRNFLLKTLHLQGWEKRVDRFKLGEGVMPASFKVLHDPIRKTDTLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLSLAESPDCQKGMKLILTLCLSEGFDTFPTLLCADGCCMVDRRMGIYGYPIEIQALFFMALRCALSMLKQDDAEGKECVERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIESRWDELVGEMPLKISYPAIESHEWQIVTGCDPKNTRWSYHNGGSWPVLLWLVTAACIKTGRPQIARRAIELAESRLLKDGWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIKRSSSWTC* >Glyma10g35890.4 sequence type=predicted peptide gene model=Glyma10g35890 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDGHMGMRKISSHCSIPDLDDSDLLRLLEKPKLNIERQRSFDERSLSELSIGLARAGLDNYDTYSPGGRSGFNTPASSTRNSFEPHPMVADAWESLRKSLVYFRGQPVGTIAAVDHQSEEVLNYDQVFVRDFVPSALAFLMNGEPEIVRNFLLKTLHLQGWEKRVDRFKLGEGVMPASFKVLHDPIRKTDTLIADFGESAIGRVAPVDSGFWWIILLRAYTKSTGDLSLAESPDCQKGMKLILTLCLSEGFDTFPTLLCADGCCMVDRRMGIYGYPIEIQALFFMALRCALSMLKQDDAEGKECVERIVKRLHALSYHMRSYFWLDFQQLNDIYRYKTEEYSHTAVNKFNVIPDSIPDWVFDFMPMRGGYFIGNVSPARMDFRWFALGNCVAILSSLATPEQSMAIMDLIESRWDELVGEMPLKISYPAIESHEWQIVTGCDPKNTRWSYHNGGSWPVLLWLVTAACIKTGRPQIARRAIELAESRLLKDGWPEYYDGKLGRYIGKQARKYQTWSIAGYLVAKMMLEDPSHLGMISLEEDKQMKPVIKRSSSWTC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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