Glyma10g35830 - SoyBase

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Report for Sequence Feature Glyma10g35830

Feature Type:	gene_model
Chromosome:	Gm10
Start:	44054004
stop:	44060090
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g35830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G63220	AT	Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0363 (InterPro:IPR007317); Has 304 Blast hits to 301 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 121; Plants - 35; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). \| chr5:25353256-25355410 REVERSE LENGTH=324	SoyBase	E_val: 5.00E-150	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3024	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR12875	Panther	UNCHARACTERIZED	JGI		ISS
PF04190	PFAM	Protein of unknown function (DUF410)	JGI		ISS
UniRef100_C6T9P8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T9P8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_F4PTG3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DUF410 family protein n=1 Tax=Dictyostelium fasciculatum (strain SH3) (Slime mold) RepID=F4PTG3_DICFS	SoyBase	E_val: 2.00E-46	ISS

Expression Patterns of Glyma10g35830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g35830 not represented in the dataset	Glyma10g35830 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g35830

Paralog	Evidence	Comments
Glyma20g31760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g35830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g214100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g35830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g35830

Limit To All Plant Sequences

>Glyma10g35830.2   sequence type=transcript   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTCAGTATATGACATATGGGGATTCTTTGTTAAATATTTTATTCTAGTTTTTTTTTTTCTGGTTTCTTTTATCATACATGCTACCCTTTGCTCTTGAAGTTGGAACATCTTTTTTTTTTGCTTCTCTATTTAAATTTATTTATCTGTAAAATGTACTTTCCTTTTATCATCCATAAATCCATGCTTGTTGTAGATCTATGAACCTCAGAATTTCTTTTTGTCAAGCTTCATTATTTTGGTCTACAACTGCATTAACTAATGCATACTCATCAGATAAGTTGTAGACATAAATGTAGCATACATGCTTTGCTGCAGATATGTTTCTGCTCAGAGGTACTGTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACAATGAGGAAATTCTTGAACGTCTCGACAAAATTTACAAATCATTTCCTCGGGTTTCATTGCCACAAAACCTATGGGATGTCGATGACATGCAGCAGCTTTCTGAAAACATTGGAAGTGCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTGGATATGGCTAAAGTGACACATCATTTTGTGAGAGGAAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGGCAAGTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCGGCTGAGGTTGCATTTCCTAAGACAGAGTTGATGCAATTTATCGCATATCTTTTGCAAACGTTGGAGAGAGATGCTTTGCCTCTTTTTAGTATGTTGAGAGCAAATTTTAAGCCAAGTATTGAGAGGGAGCCTGCGTTCAATGAGATGCTAGATGATATTGCGGAGAGGTTCTTTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAACAGCAACTTCAACAGAACGTTCAAATAATTTTTCTTTTCTTTTTTGTTAATGATAGAGCAAATTCTCCTCATTGAAGAAAATCTATGCTATCTCGTGATTTGTAAATGCTAATTTAACAATTTTGCTAGGTACCCGTTTCGATTTCTTGCATATTAAAATATTTTAATATTCCGCTTCAAAAT

>Glyma10g35830.4   sequence type=transcript   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACATTTTTAATTTTTCCATTCGCAAGAGCACTAAGAGAGCGTCATCTTCGTTATGTCGCGACAGAGATCCAGAAGAGTCGAACTACCTCCCGCTCAGGAGAATATTGAAAAATTGGAGAAGGTTGTAAACGATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGATATGTTTCTGCTCAGAGGTACTGTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACAATGAGGAAATTCTTGAACGTCTCGACAAAATTTACAAATCATTTCCTCGGGTTTCATTGCCACAAAACCTATGGGATGTCGATGACATGCAGCAGCTTTCTGAAAACATTGGAAGTGCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTGGATATGGCTAAAGTGACACATCATTTTGTGAGAGGAAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGGCAAGTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCGGCTGAGGTTGCATTTCCTAAGACAGAGTTGATGCAATTTATCGCATATCTTTTGCAAACGTTGGAGAGAGATGCTTTGCCTCTTTTTAGTATGTTGAGAGCAAATTTTAAGCCAAGTATTGAGAGGGAGCCTGCGTTCAATGAGCCATCTGCTGCATTTGATGTGACAAAACTGTGATTCAGATGCTAGATGATATTGCGGAGAGGTTCTTTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGTTGATGGGAGCTGAGTAATGACAATCATTATGGAGACACTACCAGATAGAACAGCAACTTCAACAGAACGTTCAAATAATTTTTCTTTTCTTTTTTGTTAATGATAGAGCAAATTCTCCTCATTGAAGAAAATCTATGCTATCTCGTGATTTGTAAATGCTAATTTAACAATTTTGCTAGGTACCCGTTTCGATTTCTTGCATATTAAAATATTTTAATATTCCGCTTCAAAAT

>Glyma10g35830.5   sequence type=transcript   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACATTTTTAATTTTTCCATTCGCAAGAGCACTAAGAGAGCGTCATCTTCGTTATGTCGCGACAGAGATCCAGAAGAGTCGAACTACCTCCCGCTCAGGAGAATATTGAAAAATTGGAGAAGGTTGTAAACGATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGATATGTTTCTGCTCAGAGGTACTGTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACAATGAGGAAATTCTTGAACGTCTCGACAAAATTTACAAATCATTTCCTCGGGTTTCATTGCCACAAAACCTATGGGATGTCGATGACATGCAGCAGCTTTCTGAAAACATTGGAAGTGCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTGGATATGGCTAAAGTGACACATCATTTTGTGAGAGGAAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGGCAAGTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCGGCTGAGGTTGCATTTCCTAAGACAGAGTTGATGCAATTTATCGCATATCTTTTGCAAACGTTGGAGAGAGATGCTTTGCCTCTTTTTAGTATGTTGAGAGCAAATTTTAAGCCAAGTATTGAGAGGGAGCCTGCGTTCAATGAGGTCAGATAACTTACATACCAAGTCATATGCTCTGTTTTCCTCTCTGTTGTTGGTAGATAACAATTAG

Coding sequences of Glyma10g35830

Limit To All Plant Sequences

>Glyma10g35830.1   sequence type=CDS   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCGACAGAGATCCAGAAGAGTCGAACTACCTCCCGCTCAGGAGAATATTGAAAAATTGGAGAAGGTTGTAAACGATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGATATGTTTCTGCTCAGAGGTACTGTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACAATGAGGAAATTCTTGAACGTCTCGACAAAATTTACAAATCATTTCCTCGGGTTTCATTGCCACAAAACCTATGGGATGTCGATGACATGCAGCAGCTTTCTGAAAACATTGGAAGTGCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTGGATATGGCTAAAGTGACACATCATTTTGTGAGAGGAAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGGCAAGTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCGGCTGAGGTTGCATTTCCTAAGACAGAGTTGATGCAATTTATCGCATATCTTTTGCAAACGTTGGAGAGAGATGCTTTGCCTCTTTTTAGTATGTTGAGAGCAAATTTTAAGCCAAGTATTGAGAGGGAGCCTGCGTTCAATGAGATGCTAGATGATATTGCGGAGAGGTTCTTTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGTTGATGGGAGCTGAGTAA

>Glyma10g35830.2   sequence type=CDS   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTTGCTGCAGATATGTTTCTGCTCAGAGGTACTGTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACAATGAGGAAATTCTTGAACGTCTCGACAAAATTTACAAATCATTTCCTCGGGTTTCATTGCCACAAAACCTATGGGATGTCGATGACATGCAGCAGCTTTCTGAAAACATTGGAAGTGCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTGGATATGGCTAAAGTGACACATCATTTTGTGAGAGGAAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGGCAAGTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCGGCTGAGGTTGCATTTCCTAAGACAGAGTTGATGCAATTTATCGCATATCTTTTGCAAACGTTGGAGAGAGATGCTTTGCCTCTTTTTAGTATGTTGAGAGCAAATTTTAAGCCAAGTATTGAGAGGGAGCCTGCGTTCAATGAGATGCTAGATGATATTGCGGAGAGGTTCTTTGGAGTACAGCGAAGGAACCCCATGGGAATGTTTGGAGATATATTCAAGTTGATGGGAGCTGAGTAA

>Glyma10g35830.4   sequence type=CDS   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCGACAGAGATCCAGAAGAGTCGAACTACCTCCCGCTCAGGAGAATATTGAAAAATTGGAGAAGGTTGTAAACGATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGATATGTTTCTGCTCAGAGGTACTGTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACAATGAGGAAATTCTTGAACGTCTCGACAAAATTTACAAATCATTTCCTCGGGTTTCATTGCCACAAAACCTATGGGATGTCGATGACATGCAGCAGCTTTCTGAAAACATTGGAAGTGCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTGGATATGGCTAAAGTGACACATCATTTTGTGAGAGGAAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGGCAAGTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCGGCTGAGGTTGCATTTCCTAAGACAGAGTTGATGCAATTTATCGCATATCTTTTGCAAACGTTGGAGAGAGATGCTTTGCCTCTTTTTAGTATGTTGAGAGCAAATTTTAAGCCAAGTATTGAGAGGGAGCCTGCGTTCAATGAGCCATCTGCTGCATTTGATGTGACAAAACTGTGA

>Glyma10g35830.5   sequence type=CDS   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGCGACAGAGATCCAGAAGAGTCGAACTACCTCCCGCTCAGGAGAATATTGAAAAATTGGAGAAGGTTGTAAACGATGGAAATTATTATGGAGCTCAGCAAATGTACAAATCCGTTAGTGCCAGATATGTTTCTGCTCAGAGGTACTGTGAAGCATTAGATATCCTACATTCAGGAGCGTGCATTCAATTGTCTCATGGGCAGGTTACCTGTGGAGCAGAGCTAGCTCTATTGTTTGTGGAGACATTAGGGAAAGGGAAAATTCCTTACAATGAGGAAATTCTTGAACGTCTCGACAAAATTTACAAATCATTTCCTCGGGTTTCATTGCCACAAAACCTATGGGATGTCGATGACATGCAGCAGCTTTCTGAAAACATTGGAAGTGCAAAGACACGTGTTGAGGGCTGCTCCTCATTCTTAAAAGCTGCTATCAAGTGGTCTGCCGGAAATGGAGTAAATAAGAATGGATCTCCAGAGCTGCACATCATGCTAGCTGAGTACATATTTTCTGAAAGTCCTGAGGTGGATATGGCTAAAGTGACACATCATTTTGTGAGAGGAAATAATCCAAAGAAGTTTGCTTCTACTCTAGTGAGTTTTTTGGGCAAGTGTTATCCTGGTGAAGATGATTTGGCCATTGCTCGGGCAGTTTTAAGGTACTTGTCTTCAGGTAATTTGAAAGATGCGAACATACTAATGGAAGAGATAAAGAAGCAAACTGAATCGGCTGAGGTTGCATTTCCTAAGACAGAGTTGATGCAATTTATCGCATATCTTTTGCAAACGTTGGAGAGAGATGCTTTGCCTCTTTTTAGTATGTTGAGAGCAAATTTTAAGCCAAGTATTGAGAGGGAGCCTGCGTTCAATGAGGTCAGATAA

Predicted protein sequences of Glyma10g35830

Limit To All Plant Sequences

>Glyma10g35830.1   sequence type=predicted peptide   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRQRSRRVELPPAQENIEKLEKVVNDGNYYGAQQMYKSVSARYVSAQRYCEALDILHSGACIQLSHGQVTCGAELALLFVETLGKGKIPYNEEILERLDKIYKSFPRVSLPQNLWDVDDMQQLSENIGSAKTRVEGCSSFLKAAIKWSAGNGVNKNGSPELHIMLAEYIFSESPEVDMAKVTHHFVRGNNPKKFASTLVSFLGKCYPGEDDLAIARAVLRYLSSGNLKDANILMEEIKKQTESAEVAFPKTELMQFIAYLLQTLERDALPLFSMLRANFKPSIEREPAFNEMLDDIAERFFGVQRRNPMGMFGDIFKLMGAE*

>Glyma10g35830.2   sequence type=predicted peptide   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLCCRYVSAQRYCEALDILHSGACIQLSHGQVTCGAELALLFVETLGKGKIPYNEEILERLDKIYKSFPRVSLPQNLWDVDDMQQLSENIGSAKTRVEGCSSFLKAAIKWSAGNGVNKNGSPELHIMLAEYIFSESPEVDMAKVTHHFVRGNNPKKFASTLVSFLGKCYPGEDDLAIARAVLRYLSSGNLKDANILMEEIKKQTESAEVAFPKTELMQFIAYLLQTLERDALPLFSMLRANFKPSIEREPAFNEMLDDIAERFFGVQRRNPMGMFGDIFKLMGAE*

>Glyma10g35830.4   sequence type=predicted peptide   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRQRSRRVELPPAQENIEKLEKVVNDGNYYGAQQMYKSVSARYVSAQRYCEALDILHSGACIQLSHGQVTCGAELALLFVETLGKGKIPYNEEILERLDKIYKSFPRVSLPQNLWDVDDMQQLSENIGSAKTRVEGCSSFLKAAIKWSAGNGVNKNGSPELHIMLAEYIFSESPEVDMAKVTHHFVRGNNPKKFASTLVSFLGKCYPGEDDLAIARAVLRYLSSGNLKDANILMEEIKKQTESAEVAFPKTELMQFIAYLLQTLERDALPLFSMLRANFKPSIEREPAFNEPSAAFDVTKL*

>Glyma10g35830.5   sequence type=predicted peptide   gene model=Glyma10g35830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSRQRSRRVELPPAQENIEKLEKVVNDGNYYGAQQMYKSVSARYVSAQRYCEALDILHSGACIQLSHGQVTCGAELALLFVETLGKGKIPYNEEILERLDKIYKSFPRVSLPQNLWDVDDMQQLSENIGSAKTRVEGCSSFLKAAIKWSAGNGVNKNGSPELHIMLAEYIFSESPEVDMAKVTHHFVRGNNPKKFASTLVSFLGKCYPGEDDLAIARAVLRYLSSGNLKDANILMEEIKKQTESAEVAFPKTELMQFIAYLLQTLERDALPLFSMLRANFKPSIEREPAFNEVR*

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