SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G35820 | AT | Annotation by Michelle Graham. TAIR10: ureidoglycolate hydrolases | chr2:15050933-15052004 FORWARD LENGTH=192 | SoyBase | E_val: 1.00E-77 | ISS |
| GO:0000256 | GO-bp | Annotation by Michelle Graham. GO Biological Process: allantoin catabolic process | SoyBase | N/A | ISS |
| GO:0048573 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0004848 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ureidoglycolate hydrolase activity | SoyBase | N/A | ISS |
| UniRef100_C6T2X8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T2X8_SOYBN | SoyBase | E_val: 9.00E-134 | ISS |
| UniRef100_D7LIL1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LIL1_ARALL | SoyBase | E_val: 8.00E-83 | ISS |
|
Glyma10g35810 not represented in the dataset |
Glyma10g35810 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g213900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35810.2 sequence type=transcript gene model=Glyma10g35810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTGATTCTTTGTCATACACAGCATCATCTTCTACCTTGTGTTGTGTCTGTTTGTGTGAGTGGCATAGGCATAACCAATGGACGCCACGAAGGTAGTGACGCTGAAAGCAATCGAAGCAACTCCGTCAACCTTCAAAGACTACGGTCAGGTCATCGAGGCTTCGCCGGACGGCCAGGAATTTGGTTCCCACGATGCTCAACTCGACCTTTCTCAAGGAACTCCAAGGTTCTACATTATGCATATTGAAAATCGCCCGCTTAAGTTTTCTAGTATTACACATCATGCAAGCGTGACTCAGTGCCTCGGGTCTATTGGTGGCCATGTTTGGTATCTTGGAGTGGCCAAGTCATCCATTGTTGATTCAAATGAAATCAAGGATGGCACAAGCAAGAAGATTGTGCAGTCACCTTCCGGTCATTCATATGTGCCTCCAGCCATTGAGGATGTCCAAGTTTTCAAGGTTGCAGGTTCCAAATTTCTTAAGCTTAACCGGGGAACATGGCATGCTGGCCCTCTATTTAAGGCAGCTGCAATCGACTTTTACAATCTAGAACTGAGCAACACAAATGTAAGTTTTTCACATTCCCCTTTCCTTGGTCATTAGCGAGTTACATGCATCTTAGTTCATTTGCAATGCTCTCCATAGAACCTGGGAGTTATAATTCATTTTGGTTTTTGCTTTCCTCTTTATTTTCTAGACTCTGCAATAACTTTTTGAGATCCTAACACAGTATAAATTTGGCTCCAAATATACAAGAACTAGTTTAGTTTTTTTGCTTTTCTCATTTTTGCAGAAGGTAAATTTTATTTATTTTTCTTTATGTTTTAGTGGATGTTGCTCTGGCTTATATGGCCTTTTTTATTCTATGCTCAGGTAATTGATCATACCACACACAGCTTTGAAAATGACAATGGAGTGGTCTTTTTAATTGATGAGTAACTTCATAGTTTACCACCGAGCATATGGATCAATGATTGTTCAAGCTTAATCAGAGGTCTCAGCATTCGAATTTGGGTATATACCTGCTTTAAATACTCGGAGGAAGAGTTTTGCAGTTTATAGTTGTCCTATCTGACTCGAAGAGAATTGCTTCCGGTAGAAGATATTTGTAATCTAAACCAAAAAAAAAAATCGTAGTTTTATCTAGTTTCCATCATTTCAACTGCTTCTGCATATTGTATATCATTAAATGACGACGTCATATATATGTTGTTTCTGGGAACTTCAGGTGTTGCTTCATATGGTGTCATTAGTAGAAGATTCCATTTTACCTGTATACTGTTCTGCAACAAGGTAGTCACTAGTTGACGTATAAAGGGCCAAATATGCATCATTTCTTATTTGCATTTTTCTACGTGTGAAAAACAAAATCTCTAATGGCTTATTAATTACTGAAATCTCTCTCTGTATATATAGTAGAGAGACTTGAATA
>Glyma10g35810.1 sequence type=CDS gene model=Glyma10g35810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGCCACGAAGGTAGTGACGCTGAAAGCAATCGAAGCAACTCCGTCAACCTTCAAAGACTACGGTCAGGTCATCGAGGCTTCGCCGGACGGCCAGGAATTTGGTTCCCACGATGCTCAACTCGACCTTTCTCAAGGAACTCCAAGGTTCTACATTATGCATATTGAAAATCGCCCGCTTAAGTTTTCTAGTATTACACATCATGCAAGCGTGACTCAGTGCCTCGGGTCTATTGGTGGCCATGTTTGGTATCTTGGAGTGGCCAAGTCATCCATTGTTGATTCAAATGAAATCAAGGATGGCACAAGCAAGAAGATTGTGCAGTCACCTTCCGGTCATTCATATGTGCCTCCAGCCATTGAGGATGTCCAAGTTTTCAAGGTTGCAGGTTCCAAATTTCTTAAGCTTAACCGGGGAACATGGCATGCTGGCCCTCTATTTAAGGCAGCTGCAATCGACTTTTACAATCTAGAACTGAGCAACACAAATGTAATTGATCATACCACACACAGCTTTGAAAATGACAATGGAGTGGTCTTTTTAATTGATGAGTAA >Glyma10g35810.2 sequence type=CDS gene model=Glyma10g35810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACGCCACGAAGGTAGTGACGCTGAAAGCAATCGAAGCAACTCCGTCAACCTTCAAAGACTACGGTCAGGTCATCGAGGCTTCGCCGGACGGCCAGGAATTTGGTTCCCACGATGCTCAACTCGACCTTTCTCAAGGAACTCCAAGGTTCTACATTATGCATATTGAAAATCGCCCGCTTAAGTTTTCTAGTATTACACATCATGCAAGCGTGACTCAGTGCCTCGGGTCTATTGGTGGCCATGTTTGGTATCTTGGAGTGGCCAAGTCATCCATTGTTGATTCAAATGAAATCAAGGATGGCACAAGCAAGAAGATTGTGCAGTCACCTTCCGGTCATTCATATGTGCCTCCAGCCATTGAGGATGTCCAAGTTTTCAAGGTTGCAGGTTCCAAATTTCTTAAGCTTAACCGGGGAACATGGCATGCTGGCCCTCTATTTAAGGCAGCTGCAATCGACTTTTACAATCTAGAACTGAGCAACACAAATGTAAGTTTTTCACATTCCCCTTTCCTTGGTCATTAG
>Glyma10g35810.1 sequence type=predicted peptide gene model=Glyma10g35810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDATKVVTLKAIEATPSTFKDYGQVIEASPDGQEFGSHDAQLDLSQGTPRFYIMHIENRPLKFSSITHHASVTQCLGSIGGHVWYLGVAKSSIVDSNEIKDGTSKKIVQSPSGHSYVPPAIEDVQVFKVAGSKFLKLNRGTWHAGPLFKAAAIDFYNLELSNTNVIDHTTHSFENDNGVVFLIDE* >Glyma10g35810.2 sequence type=predicted peptide gene model=Glyma10g35810 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDATKVVTLKAIEATPSTFKDYGQVIEASPDGQEFGSHDAQLDLSQGTPRFYIMHIENRPLKFSSITHHASVTQCLGSIGGHVWYLGVAKSSIVDSNEIKDGTSKKIVQSPSGHSYVPPAIEDVQVFKVAGSKFLKLNRGTWHAGPLFKAAAIDFYNLELSNTNVSFSHSPFLGH*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
