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Report for Sequence Feature Glyma10g35721

Feature Type:gene_model
Chromosome:Gm10
Start:43974896
stop:43978361
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma10g35721
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G03040AT Annotation by Michelle Graham. TAIR10: IQ-domain 2 | chr5:710380-712406 REVERSE LENGTH=461 SoyBaseE_val: 3.00E-85ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
PTHR10699Panther FAMILY NOT NAMED JGI ISS
PTHR10699:SF9Panther CALMODULIN BINDING JGI ISS
UniRef100_G7I9M2UniRef Annotation by Michelle Graham. Most informative UniRef hit: IQ domain-containing protein n=1 Tax=Medicago truncatula RepID=G7I9M2_MEDTR SoyBaseE_val: 1.00E-170ISS
UniRef100_UPI000233C4B3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233C4B3 related cluster n=1 Tax=unknown RepID=UPI000233C4B3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma10g35721
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g35721 not represented in the dataset
Glyma10g35721 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g35721
ParalogEvidenceComments
Glyma20g31810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g35721 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.10g213100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma10g35721
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma10g35721
>Glyma10g35721.1   sequence type=CDS   gene model=Glyma10g35721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGAGGAAAGGGGGTTGGTTTTCTGCAGTGAAGAGAGTTTTTGTTTCATATTCCAAAAAGGAACAGAAACAGCATCATCATAAGTCAAAGTTAGGATGTTTTGGGACTCATCACTATGAGGATCTAGAAGGAGCGCCAATTGCCGCTGTTCCTTCACTTCCACCAAGAAAAGACCCCAAACCAATAAGTGAGGCAGAGAATAATGAACAGAGCAAACAAGCCTTTTCTTTGGTTTTGGCCACTGCAGTGGCGGCAGGGGCTGCTGTTGCTGCTGCTGCTGCAGAGGTTACTCGTCTCACAAACACGCCTCGTTCTAATGGAAAAGCGAATCAAGAAATGACAGCTATCAAGATTCAAACAGCATACCGTGGATATTCGGCAAGAAAATCCTTGCGTGGCTTGAGAGGTTTGTCGAGGTTGAAAACGTTGGTGCAAGGGCAATCTGTTCAACGACAAGCGGCTACTACCTTGCAATGCATGCAAACTCTTTCACGGTTGCAGTCTCAGGTTCGTGCAAGGAAGGTCAGAATGTCTGAGGAGAATCAATCTCTTCAAAGGCAACTGCAGCAGAAACGTGAAAAGGAATTTGACAAGTCGCAAGCTAATCAGATTGGAGAGAAGTGGGATGATAGCTTGAAATCAAAGGAGCAAGTTGAAGCCAAATTGTTGAACAGGCAAGTAGCTGCTATGAGAAGAGAAAAGGCTTTGGCCTATGCATCAACACATCAACAAACGTGGAGGAACTCTTCAAAATCTGCTACAAATGCCACATTTATGGATCCAAACAATCCCCATTGGGGTTGGAATTGGCTAGAGCGATGGATGGCTGCAAGGCCGTGGGAGGGTCAAAACACTACATACCACATTGGCCATGCATCTGCCAAAAGTGTTGCAAGCCAAACCATGTCAGTTGGTGAAATTACTAAATTGTATTCTCTCCGTGATCAGAATAATGATATCAAAACTTCACCAGCAAACCAAAAACCAACCCGTCCCTGCAGCCACAATTCCCCTTCAACAACACCCTCAAAGGTCCCATTAGCCAATGGAGCAAAAACAAAGGTACTATCAAGTTCAAGGGGTGGTTCATGGGGGGGTGATGGTGACTCAAAAAGCATGTTCAGCAAAAACTTAGAAAACACTCGCAGGCACAGCATTGGAGTGTCTCAAGTGAGAGATGATGAGAGCAATTCAAGCTCATCACCGTCTACAAAGGTCGCAACCAAGGTAAAGTCATCATCATCATCATCCAAAGTGAGAAGTGCATCGTTTGGTGTACATAGAAATGGAACACCTGAAAAAGCAACTTCTGCTCCCCTAAAGAAGAGGCTTTCTTCCCCTGCTTCTCCAGCCGGTATAAGAAGGTATGCTGTTTCAACTAGGCCGGGAAATGTGGCTTCCAACAAGAGTGTTGCTAATGCTATACCATCTCTGATGAGGAGAAAGTGA
Predicted protein sequences of Glyma10g35721
>Glyma10g35721.1   sequence type=predicted peptide   gene model=Glyma10g35721   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGRKGGWFSAVKRVFVSYSKKEQKQHHHKSKLGCFGTHHYEDLEGAPIAAVPSLPPRKDPKPISEAENNEQSKQAFSLVLATAVAAGAAVAAAAAEVTRLTNTPRSNGKANQEMTAIKIQTAYRGYSARKSLRGLRGLSRLKTLVQGQSVQRQAATTLQCMQTLSRLQSQVRARKVRMSEENQSLQRQLQQKREKEFDKSQANQIGEKWDDSLKSKEQVEAKLLNRQVAAMRREKALAYASTHQQTWRNSSKSATNATFMDPNNPHWGWNWLERWMAARPWEGQNTTYHIGHASAKSVASQTMSVGEITKLYSLRDQNNDIKTSPANQKPTRPCSHNSPSTTPSKVPLANGAKTKVLSSSRGGSWGGDGDSKSMFSKNLENTRRHSIGVSQVRDDESNSSSSPSTKVATKVKSSSSSSKVRSASFGVHRNGTPEKATSAPLKKRLSSPASPAGIRRYAVSTRPGNVASNKSVANAIPSLMRRK*






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