Glyma10g35690 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g35690): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g35690): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma10g35690

Feature Type:	gene_model
Chromosome:	Gm10
Start:	43953556
stop:	43957416
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g35690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G52980	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:21482329-21483642 REVERSE LENGTH=222	SoyBase	E_val: 6.00E-89	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF11712	PFAM	Endoplasmic reticulum-based factor for assembly of V-ATPase	JGI		ISS
UniRef100_B7E9W2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: cDNA clone:002-116-F08, full insert sequence n=2 Tax=Oryza sativa Japonica Group RepID=B7E9W2_ORYSJ	SoyBase	E_val: 2.00E-37	ISS
UniRef100_I1LD31	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LD31_SOYBN	SoyBase	E_val: 3.00E-154	ISS

Expression Patterns of Glyma10g35690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g35690 not represented in the dataset	Glyma10g35690 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g35690

Paralog	Evidence	Comments
Glyma20g31840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g35690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g212800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g35690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g35690

Limit To All Plant Sequences

>Glyma10g35690.3   sequence type=transcript   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTAACAAGAGATTATTATTATCTTGTGATTCGTGAATGGTGCTGCAGTAGTGCGGGAGACAGAGCACAGAGAACCAAGCAAACAATGGGTACTGACAAGTCAAACCGGGTCGGGTTAGTGATATCCAGAACTGACCCGATTCGGGATTTCCTTTCCGACGCATCAAAAGACGCGACTCTCTCCGACGAACTTCAACGAACATCCTCCGATCTGCTCCTCCAGTCGGAGATACCCTACGTGCCATTTCGCACTGTGTGGATGGCCTCTGACCCATCAACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTAAAAAAAAAAAGTCACTTCAATCTCCTACAACAACTATGCCAGACTCACATATATGAATTTAATTAGAATGTAATTTGAACTATGATAGGATTGTTGAATTTTGTAATAATTACTATAAAAATTATATGTAGAGTGATTTCTAATTAGTTGACAGTTTAAAAAAAAATTACAGTGACACTTTGAAAATTAAACTCATGTAGCAAATCCTTGTTGAAGCTTTGGCGTGTTAATTTGCTCATTGAGTTTTTGAACATCCTTTGCTGGATTGAGTAGCTCACCAGGTTTTGTTGCTGAACCAAGTATGCCATATATTGCGATGCAGTTTGGCTGGAAGTTTTTCACAAGTTATTAGTATTACTACAAAAAATGTAATTTGAATGCATATGTAGTCAACTGTTGTGTTTTTTTAGGTCTTTTATGTACATTCATGGTAATGCCGTTTTTTTTTATCTTTTTCTATGAAGTTTGTCAATTGAACTTGACAACGTTAATGTTTGTATGAAACTAGAAAAGGAAAAATGCATAATGGGAAGTGAAAAGGAGATATTACATTTTATTGACG

>Glyma10g35690.4   sequence type=transcript   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTAACAAGAGATTATTATTATCTTGTGATTCGTGAATGGTGCTGCAGTAGTGCGGGAGACAGAGCACAGAGAACCAAGCAAACAATGGGTACTGACAAGTCAAACCGGGTCGGGTTAGTGATATCCAGAACTGACCCGATTCGGGATTTCCTTTCCGACGCATCAAAAGACGCGACTCTCTCCGACGAACTTCAACGAACATCCTCCGATCTGCTCCTCCAGTCGGAGATACCCTACGTGCCATTTCGCACTGTGTGGATGGCCTCTGACCCATCAACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTTAATCACAGTCCTGCCATGAATGCCGCTGGAGGAATTCTTGGGTTGGTTGGTGCCATGTTTGTTGAAACTTTCCTTTTCATTATTAGAAGTTCCAATGCAGATGCCGACAAAACAAGAAAATCCAGTCAGAAACCGAGATCATCCTTTTCAACATCCAGGATTAAGAAAAACCAGTAGACATGATCAGTATACTTTGCAGGATGAAAACTTTGGAGCAAATACCACTAACCATTTGCAAACATCATTGAATCATTGATGTACTGTGCAGAGGAAAGACAGCACGTGAATCACACAAAATACCCTTCCTATTTAATTTCATGTGATGATAAAGTATTTTGAATTACTAGTGTACAAGCATGAAATTTATGGCTAAATTATTCTACATGTCCTTGAATTATTGAGTATTTTTTTAACTTTTTTTAATTGAACCCTTAAATTTATATTTATTCTTT

>Glyma10g35690.5   sequence type=transcript   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTAACAAGAGATTATTATTATCTTGTGATTCGTGAATGGTGCTGCAGTAGTGCGGGAGACAGAGCACAGAGAACCAAGCAAACAATGGGTACTGACAAGTCAAACCGGGTCGGGTTAGTGATATCCAGAACTGACCCGATTCGGGATTTCCTTTCCGACGCATCAAAAGACGCGACTCTCTCCGACGAACTTCAACGAACATCCTCCGATCTGCTCCTCCAGTCGGAGATACCCTACGTGCCATTTCGCACTGTGTGGATGGCCTCTGACCCATCAACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTTAATCACAGTCCTGCCATGAATGCCGCTGGAGGAATTCTTGGGTTGGTTGGTGCCATGTTTGTTGAAACTTTCCTTTTCATTATTAGAAGTTCCAATGCAGATGCCGACAAAACAAGAAAATCCAGTCAGAAACCGAGATCATCCTTTTCAACATCCAGGATTAAGAAAAACCAGTAGACATGATCAGGATGAAAACTTTGGAGCAAATACCACTAACCATTTGCAAACATCATTGAATCATTGATGTACTGTGCAGAGGAAAGACAGCACGTGAATCACACAAAATACCCTTCCTATTTAATTTCATGTGATGATAAAGTATTTTGAATTACTAGTGTACAAGCATGAAATTTATGGCTAAATTATTCTACATGTCCTTGAATTATTGAGTATTTTTTTAA

Coding sequences of Glyma10g35690

Limit To All Plant Sequences

>Glyma10g35690.2   sequence type=CDS   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACTGACAAGTCAAACCGGGTCGGGTTAGTGATATCCAGAACTGACCCGATTCGGGATTTCCTTTCCGACGCATCAAAAGACGCGACTCTCTCCGACGAACTTCAACGAACATCCTCCGATCTGCTCCTCCAGTCGGAGATACCCTACGTGCCATTTCGCACTGTGTGGATGGCCTCTGACCCATCAACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTTAATCACAGTCCTGCCATGAATGCCGCTGGAGGAATTCTTGGGTTGGTTGGTGCCATGTTTGTTGAAACTTTCCTTTTCATTATTAGAAGTTCCAATGCAGATGCCGACAAAACAAGAAAATCCAGTCAGAAACCGAGATCATCCTTTTCAACATCCAGGATTAAGAAAAACCAGTAG

>Glyma10g35690.3   sequence type=CDS   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACTGACAAGTCAAACCGGGTCGGGTTAGTGATATCCAGAACTGACCCGATTCGGGATTTCCTTTCCGACGCATCAAAAGACGCGACTCTCTCCGACGAACTTCAACGAACATCCTCCGATCTGCTCCTCCAGTCGGAGATACCCTACGTGCCATTTCGCACTGTGTGGATGGCCTCTGACCCATCAACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTAAAAAAAAAAAGTCACTTCAATCTCCTACAACAACTATGCCAGACTCACATATATGA

>Glyma10g35690.4   sequence type=CDS   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACTGACAAGTCAAACCGGGTCGGGTTAGTGATATCCAGAACTGACCCGATTCGGGATTTCCTTTCCGACGCATCAAAAGACGCGACTCTCTCCGACGAACTTCAACGAACATCCTCCGATCTGCTCCTCCAGTCGGAGATACCCTACGTGCCATTTCGCACTGTGTGGATGGCCTCTGACCCATCAACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTTAATCACAGTCCTGCCATGAATGCCGCTGGAGGAATTCTTGGGTTGGTTGGTGCCATGTTTGTTGAAACTTTCCTTTTCATTATTAGAAGTTCCAATGCAGATGCCGACAAAACAAGAAAATCCAGTCAGAAACCGAGATCATCCTTTTCAACATCCAGGATTAAGAAAAACCAGTAG

>Glyma10g35690.5   sequence type=CDS   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACTGACAAGTCAAACCGGGTCGGGTTAGTGATATCCAGAACTGACCCGATTCGGGATTTCCTTTCCGACGCATCAAAAGACGCGACTCTCTCCGACGAACTTCAACGAACATCCTCCGATCTGCTCCTCCAGTCGGAGATACCCTACGTGCCATTTCGCACTGTGTGGATGGCCTCTGACCCATCAACCAGACCCGACTTGACCCGACTCTTTTCGGGCACCCGCTTCATCTTCTCCAGCCCTAAGCCCAGGGAAAAGAGTGAAGAATTGAAGGCGAGGCTGAAAAAGTTGGAAGATATAGCGGAGAGGAAAGCGTATCAAGAGCTTGTGAAGGATATTACGCCGCCTAAGGATGTTCAGGAACCCTTCTCTTCTTACAAGGATCAATTAGGCTTTGGTTTGCATGTTGTGGTTACCATGTTTACTGGCTATCTTCTCGGATATGCAGCATTTAGAGCATTGTTTAATCACAGTCCTGCCATGAATGCCGCTGGAGGAATTCTTGGGTTGGTTGGTGCCATGTTTGTTGAAACTTTCCTTTTCATTATTAGAAGTTCCAATGCAGATGCCGACAAAACAAGAAAATCCAGTCAGAAACCGAGATCATCCTTTTCAACATCCAGGATTAAGAAAAACCAGTAG

Predicted protein sequences of Glyma10g35690

Limit To All Plant Sequences

>Glyma10g35690.2   sequence type=predicted peptide   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTDKSNRVGLVISRTDPIRDFLSDASKDATLSDELQRTSSDLLLQSEIPYVPFRTVWMASDPSTRPDLTRLFSGTRFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDITPPKDVQEPFSSYKDQLGFGLHVVVTMFTGYLLGYAAFRALFNHSPAMNAAGGILGLVGAMFVETFLFIIRSSNADADKTRKSSQKPRSSFSTSRIKKNQ*

>Glyma10g35690.3   sequence type=predicted peptide   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTDKSNRVGLVISRTDPIRDFLSDASKDATLSDELQRTSSDLLLQSEIPYVPFRTVWMASDPSTRPDLTRLFSGTRFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDITPPKDVQEPFSSYKDQLGFGKKKKSLQSPTTTMPDSHI*

>Glyma10g35690.4   sequence type=predicted peptide   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTDKSNRVGLVISRTDPIRDFLSDASKDATLSDELQRTSSDLLLQSEIPYVPFRTVWMASDPSTRPDLTRLFSGTRFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDITPPKDVQEPFSSYKDQLGFGLHVVVTMFTGYLLGYAAFRALFNHSPAMNAAGGILGLVGAMFVETFLFIIRSSNADADKTRKSSQKPRSSFSTSRIKKNQ*

>Glyma10g35690.5   sequence type=predicted peptide   gene model=Glyma10g35690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTDKSNRVGLVISRTDPIRDFLSDASKDATLSDELQRTSSDLLLQSEIPYVPFRTVWMASDPSTRPDLTRLFSGTRFIFSSPKPREKSEELKARLKKLEDIAERKAYQELVKDITPPKDVQEPFSSYKDQLGFGLHVVVTMFTGYLLGYAAFRALFNHSPAMNAAGGILGLVGAMFVETFLFIIRSSNADADKTRKSSQKPRSSFSTSRIKKNQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain