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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G01720 | AT | Annotation by Michelle Graham. TAIR10: Ribophorin I | chr2:317193-320016 REVERSE LENGTH=464 | SoyBase | E_val: 0 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009505 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0004576 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oligosaccharyl transferase activity | SoyBase | N/A | ISS |
| GO:0004579 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | SoyBase | N/A | ISS |
| KOG2291 | KOG | Oligosaccharyltransferase, alpha subunit (ribophorin I) | JGI | ISS | |
| PTHR21049 | Panther | RIBOPHORIN I | JGI | ISS | |
| PF04597 | PFAM | Ribophorin I | JGI | ISS | |
| UniRef100_G7I373 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit n=1 Tax=Medicago truncatula RepID=G7I373_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LD03 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LD03_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g35450 not represented in the dataset |
Glyma10g35450 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g32070 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g210300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35450.2 sequence type=transcript gene model=Glyma10g35450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTTTGTTGACCCAAAATGAGAGTCGAGCGAGAGTTACTAGAGAGAGTATCTAATAAACCGAAAGTGTCTTAGTCTTCCCTGCTTCCGTCAACTGCAATGGCAATGGCAATTGCAATGGTTCCTCAACCTCTGCTGACCCTTTTCCTCTTTTTCTCCCTTCTCTCAATTGCCAACTCTTCTCCTTCCCAACACCTTCAGATCGCCAATGCCGAACGCAGGATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAGGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCGCCCACTGAAGTAGAACATCTAGCAATAGTCAAAGCTGCTGCAACTTCTGGGAAGAGGAAGAAGAAAACTTATGTTCCTCTAGATGTCAAATCTGCTGAGCTACCTGATGGACCAAATGGAACTAAGTTTTTCTCTATAACTTTGTTAACTCCACTAAGTAAAGGTGAAACCACAACACTAGAGGTGCTTTACATATTGACACATTCTCTGGAACCTTTCCCAGTAGAAATAAGTCAATCAGAGTCACAGTTGGTTTATTTCCGTGATAGTGCAATATTATTGTCTCCCTATCATGTCAAGCAACAGACAACTTTTATTAAGACTCCAAGCACCCGGGTAGAATCATTCACAGTGGTGGACCCCACTAAACGTGCTGGTACAGAGTTGAAATACGGGCCATATGAAAATCATCCCCCGTATTCATATTCTCCTGTACTTATTCATTTTGAAAATAACAATGCATTTGCTGTTGTTGAGGAGCTAGAACGTGAAATTGAAATATCTCACTGGGGAAGCATTCAAGTCACTGAGCAATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAGGGTTGAATATCAAACTAAACCAGGTGGTACTGGTGTTTCTTCATTTAAACATCTTTTAGCGAAACTACCCCCTAGGGTTCACTCAGTATACTACAGGGATGGAATAGGAAATATTTCCTCTTCACATCTACGTACAGATTCTTGGAAGTCAGAACTTGAAATTGAACCTCGGTATCCTCTATTTGGAGGCTGGAAATCAACCTTTGTCATTGGTTATGGGCTACCATTGCAAGACTTCCTTTTTGAGTCTCCGGATGGCAGAAGATACCTCAATTTTACTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAGTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGGTATTTACCAAGCCCAATGTGAAAAAATAAATAAATAAATTTAAAATTGATTTGGAATGTGGCCATTTCACAGGTTCTAACTTCCAAGAGCAAGAAATTTGTTTGTTGCAACCCCTTAATCAAGGACTAATGCTACATTTCATTTAATGTTATGATGCAACAAAAATGATCAGCACCATGTTAATGACCAAAGAAATTATACTAGGGGCATTTAGAATATCATTTATCTTATATTTAGGAGAATTATTTCATAGCAATGACAGTCCTATGAATGAGATTTTTAAACGTCAGGTGTATGCTAATGAATGGAGGACTAATTGCAGATGAATGTTGTGTTTGACATGAATCTGTTTATTTATCCTTTTTGGCAATGTTATGCCTTTGGTTGCTCATGATTTTGGGCTTAAAGCTTACAAATGATGTCTAGTAAAATTCTTCTTAGGTGCTCTTTTCTCTGCTCATGATTTTTTCTTGGTTGTAAAAACCAAGAAAAAATTATT
>Glyma10g35450.1 sequence type=CDS gene model=Glyma10g35450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATGGCAATTGCAATGGTTCCTCAACCTCTGCTGACCCTTTTCCTCTTTTTCTCCCTTCTCTCAATTGCCAACTCTTCTCCTTCCCAACACCTTCAGATCGCCAATGCCGAACGCAGGATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAGGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCGCCCACTGAAGTAGAACATCTAGCAATAGTCAAAGCTGCTGCAACTTCTGGGAAGAGGAAGAAGAAAACTTATGTTCCTCTAGATGTCAAATCTGCTGAGCTACCTGATGGACCAAATGGAACTAAGTTTTTCTCTATAACTTTGTTAACTCCACTAAGTAAAGGTGAAACCACAACACTAGAGGTGCTTTACATATTGACACATTCTCTGGAACCTTTCCCAGTAGAAATAAGTCAATCAGAGTCACAGTTGGTTTATTTCCGTGATAGTGCAATATTATTGTCTCCCTATCATGTCAAGCAACAGACAACTTTTATTAAGACTCCAAGCACCCGGGTAGAATCATTCACAGTGGTGGACCCCACTAAACGTGCTGGTACAGAGTTGAAATACGGGCCATATGAAAATCATCCCCCGTATTCATATTCTCCTGTACTTATTCATTTTGAAAATAACAATGCATTTGCTGTTGTTGAGGAGCTAGAACGTGAAATTGAAATATCTCACTGGGGAAGCATTCAAGTCACTGAGCAATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAGGGTTGAATATCAAACTAAACCAGGTGGTACTGGTGTTTCTTCATTTAAACATCTTTTAGCGAAACTACCCCCTAGGGTTCACTCAGTATACTACAGGGATGGAATAGGAAATATTTCCTCTTCACATCTACGTACAGATTCTTGGAAGTCAGAACTTGAAATTGAACCTCGGTATCCTCTATTTGGAGGCTGGAAATCAACCTTTGTCATTGGTTATGGGCTACCATTGCAAGACTTCCTTTTTGAGTCTCCGGATGGCAGAAGATACCTCAATTTTACTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAGTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGGTGTACTACAGTTTTAACCCCATATTCATGCTTGCTGAGCCATTGATGCTGGTATCTGCATTTTTCTTGTTTTTTGTGGCTTCTGTGGCATATCTTCACATTGATCTTTCCATACGCAAGTGA >Glyma10g35450.2 sequence type=CDS gene model=Glyma10g35450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAATGGCAATTGCAATGGTTCCTCAACCTCTGCTGACCCTTTTCCTCTTTTTCTCCCTTCTCTCAATTGCCAACTCTTCTCCTTCCCAACACCTTCAGATCGCCAATGCCGAACGCAGGATTGATTTGACTTCTCACATTATTAAGGTGTACTTGACATTGAAGGTTGAAAATTTGGGGACATCTCCTGCTTCAGAAGTACATATTGCCTTTTCGCCCACTGAAGTAGAACATCTAGCAATAGTCAAAGCTGCTGCAACTTCTGGGAAGAGGAAGAAGAAAACTTATGTTCCTCTAGATGTCAAATCTGCTGAGCTACCTGATGGACCAAATGGAACTAAGTTTTTCTCTATAACTTTGTTAACTCCACTAAGTAAAGGTGAAACCACAACACTAGAGGTGCTTTACATATTGACACATTCTCTGGAACCTTTCCCAGTAGAAATAAGTCAATCAGAGTCACAGTTGGTTTATTTCCGTGATAGTGCAATATTATTGTCTCCCTATCATGTCAAGCAACAGACAACTTTTATTAAGACTCCAAGCACCCGGGTAGAATCATTCACAGTGGTGGACCCCACTAAACGTGCTGGTACAGAGTTGAAATACGGGCCATATGAAAATCATCCCCCGTATTCATATTCTCCTGTACTTATTCATTTTGAAAATAACAATGCATTTGCTGTTGTTGAGGAGCTAGAACGTGAAATTGAAATATCTCACTGGGGAAGCATTCAAGTCACTGAGCAATATAGCTTGGTCCATGCTGGTGCTCGACATAAAGGTGTTTTTTCAAGGGTTGAATATCAAACTAAACCAGGTGGTACTGGTGTTTCTTCATTTAAACATCTTTTAGCGAAACTACCCCCTAGGGTTCACTCAGTATACTACAGGGATGGAATAGGAAATATTTCCTCTTCACATCTACGTACAGATTCTTGGAAGTCAGAACTTGAAATTGAACCTCGGTATCCTCTATTTGGAGGCTGGAAATCAACCTTTGTCATTGGTTATGGGCTACCATTGCAAGACTTCCTTTTTGAGTCTCCGGATGGCAGAAGATACCTCAATTTTACTTTTGGTTGCCCTCTTGTCGAGACAGTGGTTGACAAGTTGATTGTAAAAGTTGTGCTGCCAGAGGGATCCAAAGATCCCACAGTTGAGATTCCTTTTGAAGTGAAGCAACATCTAGAGATCAAGTATTCATATCTTGATGTTGTCGGCAGAACTGTGGTGGTTCTAGAAAAAAGAAATGCAGTTCCTGAGCATAATGCTCCTTTTCAGGTATTTACCAAGCCCAATGTGAAAAAATAA
>Glyma10g35450.1 sequence type=predicted peptide gene model=Glyma10g35450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMAIAMVPQPLLTLFLFFSLLSIANSSPSQHLQIANAERRIDLTSHIIKVYLTLKVENLGTSPASEVHIAFSPTEVEHLAIVKAAATSGKRKKKTYVPLDVKSAELPDGPNGTKFFSITLLTPLSKGETTTLEVLYILTHSLEPFPVEISQSESQLVYFRDSAILLSPYHVKQQTTFIKTPSTRVESFTVVDPTKRAGTELKYGPYENHPPYSYSPVLIHFENNNAFAVVEELEREIEISHWGSIQVTEQYSLVHAGARHKGVFSRVEYQTKPGGTGVSSFKHLLAKLPPRVHSVYYRDGIGNISSSHLRTDSWKSELEIEPRYPLFGGWKSTFVIGYGLPLQDFLFESPDGRRYLNFTFGCPLVETVVDKLIVKVVLPEGSKDPTVEIPFEVKQHLEIKYSYLDVVGRTVVVLEKRNAVPEHNAPFQVYYSFNPIFMLAEPLMLVSAFFLFFVASVAYLHIDLSIRK* >Glyma10g35450.2 sequence type=predicted peptide gene model=Glyma10g35450 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAMAIAMVPQPLLTLFLFFSLLSIANSSPSQHLQIANAERRIDLTSHIIKVYLTLKVENLGTSPASEVHIAFSPTEVEHLAIVKAAATSGKRKKKTYVPLDVKSAELPDGPNGTKFFSITLLTPLSKGETTTLEVLYILTHSLEPFPVEISQSESQLVYFRDSAILLSPYHVKQQTTFIKTPSTRVESFTVVDPTKRAGTELKYGPYENHPPYSYSPVLIHFENNNAFAVVEELEREIEISHWGSIQVTEQYSLVHAGARHKGVFSRVEYQTKPGGTGVSSFKHLLAKLPPRVHSVYYRDGIGNISSSHLRTDSWKSELEIEPRYPLFGGWKSTFVIGYGLPLQDFLFESPDGRRYLNFTFGCPLVETVVDKLIVKVVLPEGSKDPTVEIPFEVKQHLEIKYSYLDVVGRTVVVLEKRNAVPEHNAPFQVFTKPNVKK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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