SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04240 | AT | Annotation by Michelle Graham. TAIR10: Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein | chr5:1169544-1174638 FORWARD LENGTH=1340 | SoyBase | E_val: 0 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009741 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus | SoyBase | N/A | ISS |
| GO:0009826 | GO-bp | Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth | SoyBase | N/A | ISS |
| GO:0019344 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process | SoyBase | N/A | ISS |
| GO:0033169 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 demethylation | SoyBase | N/A | ISS |
| GO:0043687 | GO-bp | Annotation by Michelle Graham. GO Biological Process: post-translational protein modification | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0048577 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of short-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0048579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of long-day photoperiodism, flowering | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| PTHR10694 | Panther | JUMONJI DOMAIN CONTAINING PROTEIN | JGI | ISS | |
| PF02373 | PFAM | JmjC domain | JGI | ISS | |
| PF02375 | PFAM | jmjN domain | JGI | ISS | |
| UniRef100_G7I511 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger protein n=1 Tax=Medicago truncatula RepID=G7I511_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C334 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C334 related cluster n=1 Tax=unknown RepID=UPI000233C334 | SoyBase | E_val: 0 | ISS |
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Glyma10g35350 not represented in the dataset |
Glyma10g35350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g32160 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g209600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35350.1 sequence type=CDS gene model=Glyma10g35350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTAGTGTTGAAATCCCCAATTGGCTGAAAGGGTTGCCCCTGGCTCCGGAATTTCGCCCTACAGACACTGAATTTGCCGACCCAATTGCTTATATTTCGAAGATTGAGAAGGAAGCTGCCAACTTTGGGATTTGTAAGATTATCCCACCGTTTCCCAAACCTTCAAAAAAATACGTTTTTTCCAATTTGAATAGGTCACTCTTGAAGTGCCCTGATTTTGGTCCAGATAATAGTTCATTAGGTGTTTGTAATTCATCGAAAACCAGTTCTGGGGATGGTAGTAGTGACGGGGTGTTGCGAGCCGTGTTTACTACAAGGCATCAAGAACTGGGGCAGAGTCAGAGTGTGAAAAAAGCCAAAGGGACAGTTCAGAATCCACTGTCAGGTGTTCATAAGCAAGTATGGCAAAGTGGGGAGGCTTATACTCTGGAGCAGTTTGAGTCTAAATCGAAGTCTTTTGCGAAAAGTGTGCTAGGATCGGTGAAGGATGTTTCTCCTCTGGTTATAGAGTCTATGTTTTGGAAGGCAACTTTAGAGAAGCCTATATATGTAGAGTATGCAAATGACGTTCCTGGGTCTGCTTTTGAAGAGTCCAAGGGTCAATTTCATTATAGTCATAGAAGGCAAAGGAAAAGGACTTATTATAAGAGTAGGCTAGATAGCTCTGATTGTAAACAAACTGAAACGGGTTGCGTAAGAGATACCCAAACCGATGAGACCAAGGTTGCTTCTGTCCAAAGTCATTCGGACACATGTTTGCAGATGGCCAAATCAAGTACAACTGTGTCAACATTTTCATCAAATGATGATTCACAATCTTCTAAGGAAAAGAGTTCAGATGCCAGCAATGAAATGCAAGGCACTGCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTGCAAGTTATTGCACGCTCGTCTGGCTCACTAACACGTTTTATGCCTGATGATATTCCTGGTGTCACGTCACCTATGGTATACATTGGTATGCTGTTCAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCACAGCATGAATTTTCTTCACACTGGCTCATCAAAGACCTGGTATGCTGTTCCTGGAGATTATGCCTTTGCTTTTGAGGAAGTCATCCGCACTGAGGGTTATAGTGGTAACATTGATCACTTAGCTGCTTTGAAACTTTTGGGTGAGAAAACGACTCTTTTATCACCTGAGGTAATTGTTGCATCTGGGATTCCTTGTTGCAGGTTAACTCAGCACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAATGGCTTAGAGTAGCTAAGGAAGCTGCAGTACGCAGAGCTGCAATGAACTATCTTCCCATGCTTTCCCATCAGCAACTGCTTTACTTACTGACCATGTCTTTTATTTCAAGAGTGCCAAGAACACTATTACCTGGCGTGCGTAGTTCTCGTCTAAGAGACCGTCAGAAAGAAGAGAGGGAGTTTTTAGTAAAACAGGCTTTTATAGAAGACATGCTGCAGGAAAACAAGCTTCTATCCATTCTTCTTGGGAAGGAAGCAACTAAAAAAGCTGTTTTATGGAATGCTGATTTACTGCCTGATTCCAGCAAAGATTTTCAGTTGCCTGATTTAACTTCTACTACTGGATCCTCTATGGCACATATGTCAAATATTAGTTCTGCAGAAAAGAGTGGTCATTATCTGCTTGATGAAATGAGTTTGTATATGGAGAATTTGACTAATTTAGATCTTGGTGGTGATGATCTTCCATGTCACTTCCAAACTGATTCAGGAGCATTGGCTTGTGTGGGTTGTGGAATCCTTGGTTTTCCATTTATGACTGTGATACAACCAACCGAGAAATTGATAATGGAACTTCTTCCTGATAATCATCTAGTTCAAGTTTCCTCTCCAGACTCTACTGCTTGCGTTCATAGTTCCATCTCAAGGGATCTTTCTGTTTCCGAACTTTCATCAGTAAAGGAGTTGCCAGATCAATCATTAAACAAGTGCAATAAATGTTGGAACACCTCCAGTAAGTTTTTGAGGCCTCGGATTTTCTGCCTGGAGCATGCTGTTCAAATATTTGAGATGTTGCAGAGCAAAGGTGGAGCCAATGTGCTTATAATTTGCCATTCAGACTACCAGAAAATAAAGGCACATGCCAGGGCAGTTGCGGAAGAGATACATAGTGCTTTTGATTATAATGAGGTTCCATTAGATACTGCATCCCCAGAAAATTTGACTTTGATAGATCTGGCAATTGATGGTGAAGAACATGATGAATGTGAAGACTGGACATCTAAACTAGGCATTAACCTACGGAATTGTGTCCATGCAAGAAATAACTCTCCATCTAAACAAGTTCCTTGGATACTAGGGACGCTGTTGTATGATAAATGCCTTGCTTCAAAATCTTTAGCTTTAAATTGGCAATCACGGAGATCTCGATCAAAAAGGTCAAGTTGTTTGGCTCAGACTAAACCGTGTGACAGTATTGAGAGAAAGAAGGAGGATCGGTTTTATGGAAGAATAGATGACTCCCCTGCTGAAAAGAAGCTACTTCAATATTCAAGAAGGAAGTTCAAGTCAAAGCAAAGGTGTTTCCCTGTAGCAAGCATGGTCAGTGAATTCCAAGAGAAGTCCAAAAATTTGTCAGCTACTTTGAATGGGGATCATAATAATTGTTTTTCTAAAACTGATCTTGAAGCTAAGAATTTCAGGAGTGATTATGCATTGTCATGTGTCTCTGCTTCTACCAAAATGTCTCCAATACATCCTGAAATCCAGATTGCTGAAATGCCTGCTAGCACGAGATTAAACGATGCTAAACCGCAACCTTCCAATTCCATTCCTGATCATACTTTAATGACTGAAGAAGTTGGAGCAGAGATTGAGAAGCAAACCATACAGGAATCAGATGTAGACAGAAATAATGATTTAACACTCGGTCATTCTAAGATGCATTGCAATACCAGTGTCTCAGAAATATGTGGCAAGGAGAGCCAAGGTTGTCAGGACAAGAAATGTTCTAGCTCACTTACAAATGCAACTGATAGAAATATTGAAATGATTAGAATTTCTGAAATTACAGAAGCAATTATCATCGATAGCAGGTGTAATAGCTTAATTTTGAATGGTGAAGGGCATCAAGAATATCAGTCTACCTGCAAAAGCAACAATGAGGAAGCTGCTTTATCACCTGCTTCATTGGTAAATCAATCTACCCTGGCATCTGTGGTTGGAAGTTTTGGAAGTCCAAATAATAATTATACTGCAGAAAAAATTAGCAGTCCTATTTTCCTAGAAAAGACAACTGAGGAAGAAATTGATTCTTTAAGCGAAAGGGACAAGGAACCTCTAATTGATGACAGACCAATTAGCGAACATACTCTAAAAGAAGTTTGTGAAGTTCAAAGAGAGCTTTATGCTTCTGCAGACTTGCATAATACCATAGTCTTGGATTATGAGATGCAACATGAAACTCAGGGTGGAAAAGATAGCAGAAAAGAAATAAATCAGTCAACTCTTGTTTCAACAATTACAAGAGGGGAATATGCTGAAGGGTTGAATGATGAAGTGATTCCAAAGTCTGTGGAGCAGTGCCAGATTGAAAATATGAATAAAATTAATGTGGAACCTGTTTCTAGCTATGTTGCAAAAGGTGAAAATAAATGTGTAACTTCATCAGAATTAGGATGTTCTGAAGTTTTAGTGGAAACCTATCCTAAAGACTCCTGTATTCAATTGATTTCAGATAAAGAAAAAGAAACGGAAATCCAGTCAGTGAGTATAATTGATGAGGAATTTTGCTCTGGCACAGATACATCGATAGATGACTCTTCATCAATCCAGGAATGTTCTAAAATTGAGAAAGAGAGCTGTGTTACAGAAAACATAAATGGAATCAAAGCCAATTTGTCAAAAGATAATAGGGAGCTGGAAAGCTGCGAGTTGACTACAGCAGTTCCCAGATCAAATGCCAGGAAGAATAAAAAGAGAAAAGTGAAAAATACAACGAAGAATCAATCCAATATTGACAACTTTATTAGAAGTCCGTGTGAGGGGTTGAGGCCAAGAGCTGGGAAGATTGCCACTGACAAAAGTGGGGTGGAAATCAACCAAGTTGACAAGGAAAATCAGGTGGCTAAAAGGGCAAGGAGATCTTCTGAAGGTTTGGTTCCTCACAAAAATAAAAAGGATGATGTTAAAAAGCCCCATAAGTGTGACCTTGATGGTTGCCAAATGAGTTTCAAGACTAAGGCTGAGTTACTACTGCATAAACGAAACCTTTGCCCACATGAAGGGTGTGGTAAGAAGTTCAGCTCCCACAAATATGCTTTACTTCACCAGCGTGTTCATGATGATGAGAGGCCCCTTAAGTGCCCATGGAAAGGTTGTTCCATGTCATTCAAGTGGGCTTGGGCAAGGACAGAGCATATTCGCGTACATACTGGGGAGAAGCCTTATCACTGCAAGGTCGAGGGATGTGGCCTTTCTTTCAGGTTTGTATCAGATTTTAGCAGGCACAGACGGAAAACGGGGCACCATGTGAAACCTCCTGCTTGA
>Glyma10g35350.1 sequence type=predicted peptide gene model=Glyma10g35350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGSVEIPNWLKGLPLAPEFRPTDTEFADPIAYISKIEKEAANFGICKIIPPFPKPSKKYVFSNLNRSLLKCPDFGPDNSSLGVCNSSKTSSGDGSSDGVLRAVFTTRHQELGQSQSVKKAKGTVQNPLSGVHKQVWQSGEAYTLEQFESKSKSFAKSVLGSVKDVSPLVIESMFWKATLEKPIYVEYANDVPGSAFEESKGQFHYSHRRQRKRTYYKSRLDSSDCKQTETGCVRDTQTDETKVASVQSHSDTCLQMAKSSTTVSTFSSNDDSQSSKEKSSDASNEMQGTAGWKLSNSPWNLQVIARSSGSLTRFMPDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHTGSSKTWYAVPGDYAFAFEEVIRTEGYSGNIDHLAALKLLGEKTTLLSPEVIVASGIPCCRLTQHPGEFVVTFPRAYHVGFSHGFNCGEAANFGTPQWLRVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFISRVPRTLLPGVRSSRLRDRQKEEREFLVKQAFIEDMLQENKLLSILLGKEATKKAVLWNADLLPDSSKDFQLPDLTSTTGSSMAHMSNISSAEKSGHYLLDEMSLYMENLTNLDLGGDDLPCHFQTDSGALACVGCGILGFPFMTVIQPTEKLIMELLPDNHLVQVSSPDSTACVHSSISRDLSVSELSSVKELPDQSLNKCNKCWNTSSKFLRPRIFCLEHAVQIFEMLQSKGGANVLIICHSDYQKIKAHARAVAEEIHSAFDYNEVPLDTASPENLTLIDLAIDGEEHDECEDWTSKLGINLRNCVHARNNSPSKQVPWILGTLLYDKCLASKSLALNWQSRRSRSKRSSCLAQTKPCDSIERKKEDRFYGRIDDSPAEKKLLQYSRRKFKSKQRCFPVASMVSEFQEKSKNLSATLNGDHNNCFSKTDLEAKNFRSDYALSCVSASTKMSPIHPEIQIAEMPASTRLNDAKPQPSNSIPDHTLMTEEVGAEIEKQTIQESDVDRNNDLTLGHSKMHCNTSVSEICGKESQGCQDKKCSSSLTNATDRNIEMIRISEITEAIIIDSRCNSLILNGEGHQEYQSTCKSNNEEAALSPASLVNQSTLASVVGSFGSPNNNYTAEKISSPIFLEKTTEEEIDSLSERDKEPLIDDRPISEHTLKEVCEVQRELYASADLHNTIVLDYEMQHETQGGKDSRKEINQSTLVSTITRGEYAEGLNDEVIPKSVEQCQIENMNKINVEPVSSYVAKGENKCVTSSELGCSEVLVETYPKDSCIQLISDKEKETEIQSVSIIDEEFCSGTDTSIDDSSSIQECSKIEKESCVTENINGIKANLSKDNRELESCELTTAVPRSNARKNKKRKVKNTTKNQSNIDNFIRSPCEGLRPRAGKIATDKSGVEINQVDKENQVAKRARRSSEGLVPHKNKKDDVKKPHKCDLDGCQMSFKTKAELLLHKRNLCPHEGCGKKFSSHKYALLHQRVHDDERPLKCPWKGCSMSFKWAWARTEHIRVHTGEKPYHCKVEGCGLSFRFVSDFSRHRRKTGHHVKPPA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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