SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10350 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr3:3208310-3210678 FORWARD LENGTH=411 | SoyBase | E_val: 0 | ISS |
| GO:0006820 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anion transport | SoyBase | N/A | ISS |
| GO:0071722 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detoxification of arsenic-containing substance | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| KOG2825 | KOG | Putative arsenite-translocating ATPase | JGI | ISS | |
| PTHR10803 | Panther | ARSENICAL PUMP DRIVING ATPASE | JGI | ISS | |
| PF02374 | PFAM | Anion-transporting ATPase | JGI | ISS | |
| UniRef100_G7I505 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: ATPase ASNA1-like protein n=1 Tax=Medicago truncatula RepID=G7I505_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LCZ2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCZ2_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma10g35320 not represented in the dataset |
Glyma10g35320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g32200 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g209300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35320.3 sequence type=transcript gene model=Glyma10g35320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CCAAACCAAAATGTTTGCAAAGAACCCCCTCCCCCTTTGTTTATTAATCTAATATAATTATTCGAAAAAAGAAAAACCTTGCGGCGGTGTAAGAGACAGAGATATAGAGTAAACAAAAACGAAAGGCAAAGTGAGTACGAGAAATGGCATGTCGCTCTGTTCTTTCATCTTCTCCTCACATAACGAACTCCATGGCCATCAAGGAGGGTGTCCTCTCCTTCGCACCCAACCCTCCTCTGCTTCTTCGTCTCCCGAAAGCCGTTACCTTTCTCTCCTTTTCTGCTTCCACTAAACCCCCCACTAAGTCTTTTCAAGTGAGATCAGTTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGATTTCTGGGACTAAGAGGAAGTATTACATGCTTGGTGGGAAAGGGGGAGTAGGGAAGACAAGTTGTGCTGCTTCGCTTGCTGTTAAATTTGCCAATAATGGACACCCCACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTTTTTGCTCTTGAAATTAACCCTGAGAAGTTTAGGGAAGAGTTTCAAAATGCCGCCCAGAAAAAGGGTGGAACCGGAGTCAAAGACTTCATGGATGGCATGGGCCTTGGAATGATTGCAGATCAGTTGGGAGAACTAAAACTGGGAGAATTACTGGATTCACCTCCTCCTGGACTGGATGAAGCTATTGCGATCTCCAAGGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGGGTCACACATTACGATTATTGTCCTTACCCGATTTCTTGGATGCATCCATTGGGAAGATACTGAAGCTAAGACAAAAGATAGCTTCTGCTACCTCAGCAATTAAATCCGTATTTGGGCAAGAAGAAACCCGACAGAATGCTGCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACGGTGATGGCAGTTAGTGAATCATCTAGATTGAGTGCTTCCTTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCGTCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGGATCAAATGCGTGCTCTTGATATAGTTCAGAATGATCCAGAACTCTCCAGTTTATCAATGATCCAGGCACCACTCGTAGATGTTGAGATAAGAGGTGTTCCAGCTCTCAAATTTCTTGGTGACATTATTTGGAAATGATTTACACAGTTACTCAAGCAATGATTAGGTTAAATTTAGTAATTTGCTGAAGTTGGCAGTTGAAACCATAGACACATGGCATGATATCAGGGCTCATCAGATTTTGTATGATGAAGTTTTGGAGCACTTGAGATGTTCAGATTCTGGTACTGGCAGTTCTTAAAGAGACACTGGCTTCCAATATTCACACGCTAGAGTTTCAAAACACCAGAAAGCTTTTTTGGTTTTTCACATTATAAATATTGTTATTGTAAATTTATTTCTCCAGTAATTGTATCTGCACTTTTTATTTTTTTTGTTCTAATCCCCTTATTTAAGCCTTTTTTTTTTGTTGGGGGCTGTAATGGTCTTTATGTTTTGAAGTGTTGACTGAGATATTCTTGACGCACACATGAAACATATAAGAAAAGTTATATTTCAAATGTTGATTATCATCAACAAATATATTTTAGTAGTTGAGTTTGAATAATCTAAATAACTCAATATTGAGGAGAAATGTTCAGAAGACCAAAACAATAACTGTGAAGAACTAGACATAAATTACAATGGTCATAAATTGAGGCCAAAATCAGATAATATAAAAGGATCCGAATGGCTCAAACGCCATTCAAACCTAATTGATATAAGGCACGTAAGCTATATTTAAATATTAAAAATAATACAATCATTCCGATGTCTCATGCTGTTGCTGCAGTACTTTTAGACTTCTTTCTTGGTTCTAATCGTCAATTAAGTACTAAAATTAATAGCAATGAAAAATAAATTTACTAGAATGAAAGAAAATAACCACTAAATATGGCCATGCAACAATGACATGACTAATTGATCACATCTAAAATGTATAAAGGCCAATAACCAGTATCAGCCCCAAAAAAATTATCAGACATTCTTCAAATCATGAGAATCCTAATGAAATTCCTATAAGTGGTCATGCTGGCCTCTCCAATTTGTACAACTCAGATTTGTAAGACGTATAATTTGGTAGCCTGAAGTTTGGCCTTTACTTCTTTCGGAAGGTGACCATACAGAAAAATGCTATAGCCCGGCAAATTACACCCATTAGAATGAGGATAGATATGCACAAACTCCAATCGTGAAGATTATAGCCAGTTTTCAAAAGTGAACCACAACGAGTTATGAGCCACACTCCCTGATACCTGC
>Glyma10g35320.2 sequence type=CDS gene model=Glyma10g35320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATGTCGCTCTGTTCTTTCATCTTCTCCTCACATAACGAACTCCATGGCCATCAAGGAGGGTGTCCTCTCCTTCGCACCCAACCCTCCTCTGCTTCTTCGTCTCCCGAAAGCCGTTACCTTTCTCTCCTTTTCTGCTTCCACTAAACCCCCCACTAAGTCTTTTCAAGTGAGATCAGTTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGATTTCTGGGACTAAGAGGAAGTATTACATGCTTGGTGGGAAAGGGGGAGTAGGGAAGACAAGTTGTGCTGCTTCGCTTGCTGTTAAATTTGCCAATAATGGACACCCCACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTTTTTGCTCTTGAAATTAACCCTGAGAAGTTTAGGGAAGAGTTTCAAAATGCCGCCCAGAAAAAGGGTGGAACCGGAGTCAAAGACTTCATGGATGGCATGGGCCTTGGAATGATTGCAGATCAGTTGGGAGAACTAAAACTGGGAGAATTACTGGATTCACCTCCTCCTGGACTGGATGAAGCTATTGCGATCTCCAAGGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGGGTCACACATTACGATTATTGTCCTTACCCGATTTCTTGGATGCATCCATTGGGAAGATACTGAAGCTAAGACAAAAGATAGCTTCTGCTACCTCAGCAATTAAATCCGTATTTGGGCAAGAAGAAACCCGACAGAATGCTGCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACGGTGATGGCAGTTAGTGAATCATCTAGATTGAGTGCTTCCTTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCGTCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGGATCAAATGCGTGCTCTTGATATAGTTCAGAATGATCCAGAACTCTCCAGTTTATCAATGATCCAGGCACCACTCGTAGATGTTGAGATAAGAGGTGTTCCAGCTCTCAAATTTCTTGGTGACATTATTTGGAAATGA >Glyma10g35320.3 sequence type=CDS gene model=Glyma10g35320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATGTCGCTCTGTTCTTTCATCTTCTCCTCACATAACGAACTCCATGGCCATCAAGGAGGGTGTCCTCTCCTTCGCACCCAACCCTCCTCTGCTTCTTCGTCTCCCGAAAGCCGTTACCTTTCTCTCCTTTTCTGCTTCCACTAAACCCCCCACTAAGTCTTTTCAAGTGAGATCAGTTGCTGGTACTACAGAAGCTGCATCGGGGTTTGATGAGATGATTTCTGGGACTAAGAGGAAGTATTACATGCTTGGTGGGAAAGGGGGAGTAGGGAAGACAAGTTGTGCTGCTTCGCTTGCTGTTAAATTTGCCAATAATGGACACCCCACTCTCGTGGTTTCCACCGATCCAGCGCATTCTTTGAGTGATTCTTTTGCTCAGGATTTGACTGGGGGTGCATTGGTGCCAGTGGAAGGACCTGATTATCCACTTTTTGCTCTTGAAATTAACCCTGAGAAGTTTAGGGAAGAGTTTCAAAATGCCGCCCAGAAAAAGGGTGGAACCGGAGTCAAAGACTTCATGGATGGCATGGGCCTTGGAATGATTGCAGATCAGTTGGGAGAACTAAAACTGGGAGAATTACTGGATTCACCTCCTCCTGGACTGGATGAAGCTATTGCGATCTCCAAGGTTATACAATTTCTCGAATCACAGGAATATAGCATGTTTACTCGAATAGTATTTGATACAGCACCTACGGGTCACACATTACGATTATTGTCCTTACCCGATTTCTTGGATGCATCCATTGGGAAGATACTGAAGCTAAGACAAAAGATAGCTTCTGCTACCTCAGCAATTAAATCCGTATTTGGGCAAGAAGAAACCCGACAGAATGCTGCTGATAAATTGGAGAAACTCAGGGAGAGGATGATAAAAGTGCGTGAACTCTTTCGTGATACTGATTCAACCGAATTTGTCATTGTTACAATCCCCACGGTGATGGCAGTTAGTGAATCATCTAGATTGAGTGCTTCCTTGAAGAAGGAAAATGTTCCTGTGAAGAGACTTATTGTCAACCAGATTCTTCCACCGTCTACATCTGATTGCAAGTTTTGTGCTATGAAAAGAAAGGATCAAATGCGTGCTCTTGATATAGTTCAGAATGATCCAGAACTCTCCAGTTTATCAATGATCCAGGCACCACTCGTAGATGTTGAGATAAGAGGTGTTCCAGCTCTCAAATTTCTTGGTGACATTATTTGGAAATGA
>Glyma10g35320.2 sequence type=predicted peptide gene model=Glyma10g35320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACRSVLSSSPHITNSMAIKEGVLSFAPNPPLLLRLPKAVTFLSFSASTKPPTKSFQVRSVAGTTEAASGFDEMISGTKRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGALVPVEGPDYPLFALEINPEKFREEFQNAAQKKGGTGVKDFMDGMGLGMIADQLGELKLGELLDSPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLRQKIASATSAIKSVFGQEETRQNAADKLEKLRERMIKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSASLKKENVPVKRLIVNQILPPSTSDCKFCAMKRKDQMRALDIVQNDPELSSLSMIQAPLVDVEIRGVPALKFLGDIIWK* >Glyma10g35320.3 sequence type=predicted peptide gene model=Glyma10g35320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MACRSVLSSSPHITNSMAIKEGVLSFAPNPPLLLRLPKAVTFLSFSASTKPPTKSFQVRSVAGTTEAASGFDEMISGTKRKYYMLGGKGGVGKTSCAASLAVKFANNGHPTLVVSTDPAHSLSDSFAQDLTGGALVPVEGPDYPLFALEINPEKFREEFQNAAQKKGGTGVKDFMDGMGLGMIADQLGELKLGELLDSPPPGLDEAIAISKVIQFLESQEYSMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLRQKIASATSAIKSVFGQEETRQNAADKLEKLRERMIKVRELFRDTDSTEFVIVTIPTVMAVSESSRLSASLKKENVPVKRLIVNQILPPSTSDCKFCAMKRKDQMRALDIVQNDPELSSLSMIQAPLVDVEIRGVPALKFLGDIIWK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
