SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10360 | AT | Annotation by Michelle Graham. TAIR10: pumilio 4 | chr3:3211276-3215144 REVERSE LENGTH=1003 | SoyBase | E_val: 0 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0003729 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: mRNA binding | SoyBase | N/A | ISS |
| KOG1488 | KOG | Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) | JGI | ISS | |
| PTHR12537 | Panther | RNA BINDING PROTEIN PUMILIO-RELATED | JGI | ISS | |
| PTHR12537:SF12 | Panther | PUMILIO | JGI | ISS | |
| PF00806 | PFAM | Pumilio-family RNA binding repeat | JGI | ISS | |
| PF07990 | PFAM | Nucleic acid binding protein NABP | JGI | ISS | |
| UniRef100_G7I500 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L4 n=1 Tax=Medicago truncatula RepID=G7I500_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C331 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C331 related cluster n=1 Tax=unknown RepID=UPI000233C331 | SoyBase | E_val: 0 | ISS |
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Glyma10g35290 not represented in the dataset |
Glyma10g35290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g32230 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g209000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35290.1 sequence type=CDS gene model=Glyma10g35290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCAGATGGGCGGTGGGAGTAAGGTAGATTTGCAAACATTAGATGAGGGTATGCAGCCTTTGGCAAATGGGACTATTGAAGACACCTTGCAGAGTGAGCTGGAGAAGATACTGCAAGAGCAGCGTAATCGGCAATTTATCAATCGAGAGAGGGAATACAATATTAGTAGGAGTGGAAGTGCACCGCCGACAGTGGAGGGATCGTTGAGTGCTTTTGGGAGCCTAAGGAACTCTGATTTCGGATTGATCAATGATAGGAGGAGTAATAACAATGGACTTTTGACTGAAGATGAGATACGATCGCATCCTGCATATCTTTCTTATTATTACTCACATGAGAGTATAAATCCTAGGTTGCCTCCACCTTTGTTGTCGAAAGAAGACTGGCGTGTTGCACAAAGGTTTCATGGTGGTGGGTCTTCTTCAATTGAGGGATTTGGGGACTGGAGGAAGAATGTAGCTCCCAATGGCGATAGTTCGTCTCTATTTTCAATGCAGCCAGGATTTTCTGTGCAACAGGTAGAGAATGATTTGATGGAACTGAGCAAAGCCAGTGGATGGAATGTCTCTAGGCAGGGTTCAAGTCAGATGCTCGACAGACATATGGGTGGTTTGACAAGAATGTCAGGAGCTGGTCTTGGTGGGAGGAGAACGAGTTATACTGACATTCTTCAGGAAGGACTTGAGCAACCTACAATGTTGTCTAGCACCATGTCACGTCCAGCGAGTCACAATGCATTTGGTGATATTATGGGTTCAACTGGCATTGTTGATCGTGAATCCTTTGAGGGCTTGCGTTCTTCAGCTTCTACCCCTGGTTTGGTTGGACTTCAGAACCATGGTGTAAATCTTTCTCATAGTTTTGCACCCTCTGTGGGCACTTCTCTGTCAAGGGTGAAAACCCCTGAACCACAGGTTATTGGGAGACCTGTTGGGTCTGCAGCTTCCCAAATGGGTGGTAAAGTTTTCTCTGTTGAGAATAGTGGTATGGGCGTGGGCAGCCAGCATGGCCATTCTTCCAATATGACTGATCTTACTGATGTGGTGTCTTCTTTAGCTGGGTTAAATTTGTCAGGTGTTAGACATGCAGAGCAAGATAGTCTTTTGAAATCTAAGCTACAAATGGATGTTGATAACCATGCTGATGTTCTACTAAACACGCAAAGCAATGTTAATTTGCCCAGACATAATGATATTGTGACAAACCTTAACACCTTTAGTTCAAATGACCATGTCAATCTACTGAAAAAAACTGCTTCTTCTGCTAATCTTCGCTCAAAAGTGCATTCTACTGGAAATGCAGCAAGTTTGCCAAGTGCAGACTTCACTGGCCATGTTCCTAGTGCATATCTTGTAAACTCGAAATTGAATTCTGTTTCGATAAATAATCTCGAGACAGCTATGAGACTTCGCAGAGATGGACAAAGTTTAGATGCACAAGGAAACCATGTTGGTCCTGAACTTCATTCCACAACTCTGGACCCACGCTTCATCCAATGCTTGCAGCAAAGTGCTGATTACTCGATGCAAGGGATGAGTAGTTCTGGTCATCCTCTTCAAATGAGAAATTTCCCCGATGCTTCACATGGAGATTTGGAGGGACTTAGGAAAGCATATCTTGAGACACTTCTTACTCAACAAAAGCAACAGTATGAACTACCACTTCTGAGCAAATCTGGGCTGACTAATGGGTTCTATGGGAGTCAGCCATATGGTCTTGGCATGCCATATTCTGGAAAGCAGATTGCAAATTCCACACTTCCTTCTCTTGGATCTGGAAATCCACTCTTTGAGAATGAACGTATTTCACGCTTAAATTCCATGATGAGAAGTTCAATGGGAGGTTCTGGTGGCTCATGGCATGCTGATATTTGCAATAATATAGAGGGAAGATTTGCTCCATCCTTACTAGACGAGTTCAAGAACAAGAAGACCAGGCCTTTTGAACTTCCAGATATCATTGATCATGTGGTTCAATTCAGTACTGATCAGTATGGTAGCCGCTTTATTCAGCAGAAATTAGAAACGGCATCTGTAGAAGAGAAGACCAAGATATTTCCTGAGATCATTCCTCATGCTCGTGCCTTAATGACTGATGTTTTTGGCAATTATGTTATACAAAAATTTTTTGAGCATGGTACCGAAAGTCAAAGAAAGGAATTAGCCAACCAACTTACAGGTCATGTTTTACCTCTTAGTCTGCAAATGTATGGTTGCAGAGTGATTCAAAAGGCCTTGGAGGTGGTTGATGTGGATCAGCAGGGTCAAATGGTGTCTGAGCTCAATGGTGCAATAATGAAATGTGTACGTGATCAAAATGGAAACCATGTTATTCAGAAGTGTATAGAGTGTGTCCCTCAAGATAAAATTCAGTTTATTGTTTCATCCTTTTATGGGCAAGTTGTTGCACTTTCTACTCATCCTTATGGGTGCAGAGTTATCCAGAGGGTTCTAGAACATTGTGATGATCAAAATACACAACAAATTATCATGGAGGAAATCATGCAATCTGTCAGCACTTTAGCACAGGATCAATATGGAAATTATGTTATTCAGCATATTGTGGAACATGGTAAACCACATGAACGGACTACCATTATCAGCAAGCTTGCTGGTCAGATTGTTAAGATGAGCCAGCAAAAGTTTGCTTCAAATGTTATTGAGAAATGTTTGGCTTTTGGTAGTCCTGAAGAACGTCAGATTTTGGTGAATGAAATGCTTGGCACTTCTGATGAGAATGAGCCCTTACAGGCTATGATGAAGGACCCTTTTGGAAATTATGTAGTGCAAAAGGTTCTTGAGACTTGTGACGATCGAAGTCTTGAGCTGATCCTTTCTCGCATCAAGGTTCACTTAAATGCACTGAAGCGGTATACTTATGGCAAACATATAGTTTCCCGTGTGGAGAAGCTGATAACCACTGGAGAAAGGCGCATAGGGTTGTTGGCCTAA
>Glyma10g35290.1 sequence type=predicted peptide gene model=Glyma10g35290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MQMGGGSKVDLQTLDEGMQPLANGTIEDTLQSELEKILQEQRNRQFINREREYNISRSGSAPPTVEGSLSAFGSLRNSDFGLINDRRSNNNGLLTEDEIRSHPAYLSYYYSHESINPRLPPPLLSKEDWRVAQRFHGGGSSSIEGFGDWRKNVAPNGDSSSLFSMQPGFSVQQVENDLMELSKASGWNVSRQGSSQMLDRHMGGLTRMSGAGLGGRRTSYTDILQEGLEQPTMLSSTMSRPASHNAFGDIMGSTGIVDRESFEGLRSSASTPGLVGLQNHGVNLSHSFAPSVGTSLSRVKTPEPQVIGRPVGSAASQMGGKVFSVENSGMGVGSQHGHSSNMTDLTDVVSSLAGLNLSGVRHAEQDSLLKSKLQMDVDNHADVLLNTQSNVNLPRHNDIVTNLNTFSSNDHVNLLKKTASSANLRSKVHSTGNAASLPSADFTGHVPSAYLVNSKLNSVSINNLETAMRLRRDGQSLDAQGNHVGPELHSTTLDPRFIQCLQQSADYSMQGMSSSGHPLQMRNFPDASHGDLEGLRKAYLETLLTQQKQQYELPLLSKSGLTNGFYGSQPYGLGMPYSGKQIANSTLPSLGSGNPLFENERISRLNSMMRSSMGGSGGSWHADICNNIEGRFAPSLLDEFKNKKTRPFELPDIIDHVVQFSTDQYGSRFIQQKLETASVEEKTKIFPEIIPHARALMTDVFGNYVIQKFFEHGTESQRKELANQLTGHVLPLSLQMYGCRVIQKALEVVDVDQQGQMVSELNGAIMKCVRDQNGNHVIQKCIECVPQDKIQFIVSSFYGQVVALSTHPYGCRVIQRVLEHCDDQNTQQIIMEEIMQSVSTLAQDQYGNYVIQHIVEHGKPHERTTIISKLAGQIVKMSQQKFASNVIEKCLAFGSPEERQILVNEMLGTSDENEPLQAMMKDPFGNYVVQKVLETCDDRSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGERRIGLLA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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