Glyma10g35230 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g35230): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g35230): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma10g35230

Feature Type:	gene_model
Chromosome:	Gm10
Start:	43422385
stop:	43430247
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g35230

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54840	AT	Annotation by Michelle Graham. TAIR10: Ras-related small GTP-binding family protein \| chr3:20318597-20320782 FORWARD LENGTH=202	SoyBase	E_val: 7.00E-124	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0007264	GO-bp	Annotation by Michelle Graham. GO Biological Process: small GTPase mediated signal transduction	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0016197	GO-bp	Annotation by Michelle Graham. GO Biological Process: endosomal transport	SoyBase	N/A	ISS
GO:0045022	GO-bp	Annotation by Michelle Graham. GO Biological Process: early endosome to late endosome transport	SoyBase	N/A	ISS
GO:0005768	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endosome	SoyBase	N/A	ISS
GO:0005769	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: early endosome	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0010009	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: external side of endosome membrane	SoyBase	N/A	ISS
GO:0003924	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTPase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005525	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GTP binding	SoyBase	N/A	ISS
KOG0075	KOG	GTP-binding ADP-ribosylation factor-like protein	JGI		ISS
KOG0092	KOG	GTPase Rab5/YPT51 and related small G protein superfamily GTPases	JGI		ISS
PTHR24073	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24073:SF254	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00071	PFAM	Ras family	JGI		ISS
UniRef100_I1NHI2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1NHI2_SOYBN	SoyBase	E_val: 6.00E-143	ISS
UniRef100_Q40210	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RAB5B n=1 Tax=Lotus japonicus RepID=Q40210_LOTJA	SoyBase	E_val: 2.00E-136	ISS

Expression Patterns of Glyma10g35230

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g35230 not represented in the dataset	Glyma10g35230 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g35230

Paralog	Evidence	Comments
Glyma20g32320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g35230 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g208300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g35230

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g35230

Limit To All Plant Sequences

>Glyma10g35230.2   sequence type=transcript   gene model=Glyma10g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATTATATAAAGAATTTTCATTTTCATTTTAGCCTTTAAACCTACGAAGTGGAGATCCTCGTCCTCACGGAAAGCATGATATAGGAGCCAACATTTTTTGTGCTAAGTGCAAACCACGCCAGAATTTCATTATTTCCATTAACTCCCGATTCGGCTTAAATTGGAACACCACCAATTTTCGTGGGAACCAACAAAACAAAAAAAGGGTCCAATTTTTTGAAAATTATTACCATCATTCATATTCATCAACGACCCCTCTTCTGTGCCCACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAGGTATGCTGCGTTAGCACCGCTATATTACCGTGGTGCAGCAGTTGCAGTTATTGTTTATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAGGATGGCACTGACTATGCAGAGAAGAATGGTATGTTTTTCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGAATGAGAATGTACGAACAATGGAAAATAGTTAGCTGTTGTGATTGTTATGGCAAATAAGGTTGGAGATGGTTACGTCATACATTGGGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAGCAGTTCAGTAAGGGAAGGGATCTGCATTAGCTTTGGATCCTTCAAAACTATATAATGTATGGATTGTGTTTATGTATATTGTGATTAGATAATTTCTATGGTCTTTTTATCAACCTGTAATAATAATATCCTGGAGGTCATGTCAGATAGATGATACGTATTAGGCTATGCTTTGTGAGACCCACAAATACGAGTCATGTCTGTTATGATTTCATATCCCTTGACTTGTCTCTTATTGATTGGTATGCCTAATTAAGGCTATAATATCAATGATGCCAAGTGAGACGCCCATGCATTTGGATTTGGTTGTTACAGACCATGCTTTGTGAGAACCACTAATCAATGCTAAATTGAACATATTTGGATGTTGGTGGTTTTATAAATTTACATTGCGTCTTACGTGGACTGATCTTGGTGCATAATCTTTTTAATACCACTACTTTAGATTATAATTTTAGACTTGGGAGGCATATGGAATCGATTTGTTTAGATTTATCATT

>Glyma10g35230.3   sequence type=transcript   gene model=Glyma10g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATTATATAAAGAATTTTCATTTTCATTTTAGCCTTTAAACCTACGAAGTGGAGATCCTCGTCCTCACGGAAAGCATGATATAGGAGCCAACATTTTTTGTGCTAAGTGCAAACCACGCCAGAATTTCATTATTTCCATTAACTCCCGATTCGGCTTAAATTGGAACACCACCAATTTTCGTGGGAACCAACAAAACAAAAAAAGGGTCCAATTTTTTGAAAATTATTACCATCATTCATATTCATCAACGACCCCTCTTCTGTGCCCACTTCCAAATCTTCTCCTCTCGCTATGGGTTGCGGCTCCTCCCTTCCAGATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAGGTATGCTGCGTTAGCACCGCTATATTACCGTGGTGCAGCAGTTGCAGTTATTGTTTATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAGAGAAGAATGGTATGTTTTTCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGATGTAGCCAGATAGCAGTTCAGTAAGGGAAGGGATCTGCATTAGCTTTGGATCCTTCAAAACTATATAATGTATGGATTGTGTTTATGTATATTGTGATTAGATAATTTCTATGGTCTTTTTATCAACCTGTAATAATAATATCCTGGAGGTCATGTCAGATAGATGATACGTATTAGGCTATGCTTTGTGAGACCCACAAATACGAGTCATGTCTGTTATGATTTCATATCCCTTGACTTGTCTCTTATTGATTGGTATGCCTAATTAAGGCTATAATATCAATGATGCCAAGTGAGACGCCCATGCATTTGGATTTGGTTGTTACAGACCATGCTTTGTGAGAACCACTAATCAATGCTAAATTGAACATATTTGGATGTTGGTGGTTTTATAAATTTACATTGCGTCTTACGTGGACTGATCTTGGTGCATAATCTTTTTAATACCACTACTTTAGATTATAATTTTAGACTTGGGAGGCATATGGAATCGATTTGTTTAGATTTATCATT

Coding sequences of Glyma10g35230

Limit To All Plant Sequences

>Glyma10g35230.1   sequence type=CDS   gene model=Glyma10g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCGGCTCCTCCCTTCCAGATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAGGTATGCTGCGTTAGCACCGCTATATTACCGTGGTGCAGCAGTTGCAGTTATTGTTTATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAGGATGGCACTGACTATGCAGAGAAGAATGGTATGTTTTTCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGGAAATTGCCAAAAGACTGCCTCGCCCATCAGTTAGTTGA

>Glyma10g35230.2   sequence type=CDS   gene model=Glyma10g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCGGCTCCTCCCTTCCAGATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAGGTATGCTGCGTTAGCACCGCTATATTACCGTGGTGCAGCAGTTGCAGTTATTGTTTATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAGGATGGCACTGACTATGCAGAGAAGAATGGTATGTTTTTCATAGAGACATCTGCAAAGACAGCAGATAATATAAATGAACTGTTTGAGAATGAGAATGTACGAACAATGGAAAATAGTTAG

>Glyma10g35230.3   sequence type=CDS   gene model=Glyma10g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGCGGCTCCTCCCTTCCAGATAGGGGCTCAAGGCAGTTGGGTCGACCCAATTCAGAGAATGGTGGAGGGCAGGACGCCAAGAATCTGAGGGTCAAGCTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGGTAACTGTTGGAGCTTCTTTTTTGTCGCAAACAATAGCTCTGCAAGACTCTACAACAGTCAAGTTTGAAATATGGGATACTGCTGGTCAAGAGAGGTATGCTGCGTTAGCACCGCTATATTACCGTGGTGCAGCAGTTGCAGTTATTGTTTATGATATAACAAGCCCAGAATCTTTCAGCAAAGCACAGTACTGGGTTAAGGAGCTACAAAAACATGGAAGCCCTGATATAGTGATGGCACTGGTCGGTAATAAAGCTGATCTTCTTGAGAAGCGGGAAGTTGCTGTCCAGAGAAGAATGGTATGTTTTTCATAG

Predicted protein sequences of Glyma10g35230

Limit To All Plant Sequences

>Glyma10g35230.1   sequence type=predicted peptide   gene model=Glyma10g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCGSSLPDRGSRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLEKREVAVQDGTDYAEKNGMFFIETSAKTADNINELFEEIAKRLPRPSVS*

>Glyma10g35230.2   sequence type=predicted peptide   gene model=Glyma10g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCGSSLPDRGSRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLEKREVAVQDGTDYAEKNGMFFIETSAKTADNINELFENENVRTMENS*

>Glyma10g35230.3   sequence type=predicted peptide   gene model=Glyma10g35230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGCGSSLPDRGSRQLGRPNSENGGGQDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVIVYDITSPESFSKAQYWVKELQKHGSPDIVMALVGNKADLLEKREVAVQRRMVCFS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain