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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G54860 | AT | Annotation by Michelle Graham. TAIR10: Sec1/munc18-like (SM) proteins superfamily | chr3:20324286-20329841 REVERSE LENGTH=592 | SoyBase | E_val: 0 | ISS |
| GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
| GO:0006904 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis | SoyBase | N/A | ISS |
| GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
| GO:0007033 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vacuole organization | SoyBase | N/A | ISS |
| GO:0009306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein secretion | SoyBase | N/A | ISS |
| GO:0016192 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0048193 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0008565 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein transporter activity | SoyBase | N/A | ISS |
| KOG1302 | KOG | Vacuolar sorting protein VPS33/slp1 (Sec1 family) | JGI | ISS | |
| PTHR11679 | Panther | VESICLE PROTEIN SORTING-ASSOCIATED | JGI | ISS | |
| PTHR11679:SF1 | Panther | SYNTAXIN BINDING PROTEIN-1,2,3 | JGI | ISS | |
| PF00995 | PFAM | Sec1 family | JGI | ISS | |
| UniRef100_B9S0W7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Vacuolar protein sorting, putative n=1 Tax=Ricinus communis RepID=B9S0W7_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233D7E0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233D7E0 related cluster n=1 Tax=unknown RepID=UPI000233D7E0 | SoyBase | E_val: 0 | ISS |
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Glyma10g35210 not represented in the dataset |
Glyma10g35210 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g208100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35210.2 sequence type=transcript gene model=Glyma10g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TGAAATCCACCATGAGTCGGGCCAAAGTTTGGGCCTGAGATCTGCGGGTTCGAGGAAGTAAAGGGCGCCTGGGTGCGTGCGTGGGTGTTTGGGGGAGAAGAGTTTGATGAAGAAGAGAAGATCGGGGATTAACGAACTATGAATTGAACTTTCTCAATGGCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCTCGCTTATCATACAGACATCCATTCTCAAGGAGCATGGAGTTGAATTGCGGCATCTTTCCGGGGACCCAATTCAAACTGACTGCAGCAAAGTAGTTTACATTGTGCATGCTCAGCCCAAGTTGATGAGATTCATATGTTCTAATATTCATAATGATGTATCGAAAGGACTGCAAAGAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAGTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCCTTGTATAGTGTACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAAGAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCCATTCACAAACTTGAGTTTTCTTTTGGAGTGATACCAAATGTGAGGGCAAAAGGAAAAGCATCTGTGCGTGTTGCAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGATATGGTTGTGCCAGAGATAAATACAGTAATCCTTTTAGATAGAGAGGTGGACATGGTTACTCCTTTGTGTTCCCAATTAACATATGAGGGGCTACTTGACGAGTTTCTGCACATCAACAATGGTTCTGTAGAGCTTGATGCATCTATTATGGGTCTTCAGCAAGAAGGGAAGAAAACTAAAGTTCCACTTAATTCAAGTGACAAGCTTTTTAAGGAGATACGAGATCTCAACTTTGAAGTTGTTGTCCAGATTTTGCGCCAAAAAGCTACTTCCATGAAGCAAGACTACACAGAAATGACAACTACTACGCAGACAGTTTCCGAGTTGAAGGACTTTGTGAAAAAGCTGAACTCATTGCCAGAGATGACCAGGCACATAAATCTTGCTCAGCATCTATCAACATTCACATCAAAGCCTTCATTTCTTGGGCAACTTGATATGGAACATACAATTGTAGAGGCCCAGAGTTATGATATATGCTTTGAGTATATTGAAGAACTGATCCATAAGCAGGAGCCTTTGACAACAGTCTTACGCCTTCTAATCCTATTTTCGATTACTAATTCTGGGTTGCCAAAGAAGCATTTTGACTACTTCAGGAGAGAACTACTCCACAGCTATGGATTTGAGCACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAACCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGCCAAACCTTGGTTGAAACGTTTATGGAAAAGCTAGGTTGATTAATGAGTGTAGCTTTGTCAGTTTATCATCCCGAGTATCTTTGTTTGTTTGTGGTGGTGAGTTTATCTTGATGATGCCTTACCAATGCTATGCCTAACGAGTTCTCTTTGGACGACACTGAACTGATGGTTTGATGAAAGCTTTATTTGTGCTATAAAATCCTCCTGTATTGTTTTTCTTAGAGGGACAATGGGGGGAGGGTGGGACCTAGTCCTTTGAGGGGACTGTCTGGAATTAATAGTATGAGTGCTATTTTTCTATGTGCTCTATTTCATTGTGTTATTCTTGATTTTAGTCCAAGAGATGAATGAATGATGCTAGAAATTCTCAAAGCTAGAAATGGTGAAGAGATGAATGATGCTAATGTTAAAGCAAAGAATGTTGATCCTTCATGAGTTAATGCAAGAAGATATTAATGTGTAAAAAATTCTCTTCTACACTTTCAATAATTGTATAGGTCTATTTGATAACAGATAATGTCTTTTTTCCCCTTTGTCAGGTTTTAATTTGCTTAGGCTTATCTAGAATCGAAGATGATATCTTAGGAA
>Glyma10g35210.1 sequence type=CDS gene model=Glyma10g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCAGATTCCCAACCTAGACAATGCTCCTGTCAATCTCACATCCATTAGGGAGCATTCGCAAAAAGAGCTCCTCAACATCCTCAAGAATGTTCGAGGAAAGAAGTGTTTAGTCATTGATCCGAAGCTCGGAGACTCTCTCTCGCTTATCATACAGACATCCATTCTCAAGGAGCATGGAGTTGAATTGCGGCATCTTTCCGGGGACCCAATTCAAACTGACTGCAGCAAAGTAGTTTACATTGTGCATGCTCAGCCCAAGTTGATGAGATTCATATGTTCTAATATTCATAATGATGTATCGAAAGGACTGCAAAGAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAGTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCCTTGTATAGTGTACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAAGAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCCATTCACAAACTTGAGTTTTCTTTTGGAGTGATACCAAATGTGAGGGCAAAAGGAAAAGCATCTGTGCGTGTTGCAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGATATGGTTGTGCCAGAGATAAATACAGTAATCCTTTTAGATAGAGAGGTGGACATGGTTACTCCTTTGTGTTCCCAATTAACATATGAGGGGCTACTTGACGAGTTTCTGCACATCAACAATGGTTCTGTAGAGCTTGATGCATCTATTATGGGTCTTCAGCAAGAAGGGAAGAAAACTAAAGTTCCACTTAATTCAAGTGACAAGCTTTTTAAGGAGATACGAGATCTCAACTTTGAAGTTGTTGTCCAGATTTTGCGCCAAAAAGCTACTTCCATGAAGCAAGACTACACAGAAATGACAACTACTACGCAGACAGTTTCCGAGTTGAAGGACTTTGTGAAAAAGCTGAACTCATTGCCAGAGATGACCAGGCACATAAATCTTGCTCAGCATCTATCAACATTCACATCAAAGCCTTCATTTCTTGGGCAACTTGATATGGAACATACAATTGTAGAGGCCCAGAGTTATGATATATGCTTTGAGTATATTGAAGAACTGATCCATAAGCAGGAGCCTTTGACAACAGTCTTACGCCTTCTAATCCTATTTTCGATTACTAATTCTGGGTTGCCAAAGAAGCATTTTGACTACTTCAGGAGAGAACTACTCCACAGCTATGGATTTGAGCACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAACCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGCCAAACCTTGGTTGAAACGTTTATGGAAAAGCTAGGTTGA >Glyma10g35210.2 sequence type=CDS gene model=Glyma10g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGATTCATATGTTCTAATATTCATAATGATGTATCGAAAGGACTGCAAAGAGAATATCATGTTTATTTTGTCCCTCGCCGCACTGTTGTTTGTGAGAAAGTTCTTGAGGAAGAGAAATTACATAACATGGTTACAATAGGGGAATATCCCTTGTATAGTGTACCAATGGATGAGGATGTATTATCATTTGAACTTGATCTCTCTTACAAAGAATGCCAAGTTGATGGTGATACAAGCTCACTTTGGCACATTGCTAAAGCCATTCACAAACTTGAGTTTTCTTTTGGAGTGATACCAAATGTGAGGGCAAAAGGAAAAGCATCTGTGCGTGTTGCAGACATCCTAAACCGAATGCAAGCTGAGGAACCAGTTAACTCATCTGATATGGTTGTGCCAGAGATAAATACAGTAATCCTTTTAGATAGAGAGGTGGACATGGTTACTCCTTTGTGTTCCCAATTAACATATGAGGGGCTACTTGACGAGTTTCTGCACATCAACAATGGTTCTGTAGAGCTTGATGCATCTATTATGGGTCTTCAGCAAGAAGGGAAGAAAACTAAAGTTCCACTTAATTCAAGTGACAAGCTTTTTAAGGAGATACGAGATCTCAACTTTGAAGTTGTTGTCCAGATTTTGCGCCAAAAAGCTACTTCCATGAAGCAAGACTACACAGAAATGACAACTACTACGCAGACAGTTTCCGAGTTGAAGGACTTTGTGAAAAAGCTGAACTCATTGCCAGAGATGACCAGGCACATAAATCTTGCTCAGCATCTATCAACATTCACATCAAAGCCTTCATTTCTTGGGCAACTTGATATGGAACATACAATTGTAGAGGCCCAGAGTTATGATATATGCTTTGAGTATATTGAAGAACTGATCCATAAGCAGGAGCCTTTGACAACAGTCTTACGCCTTCTAATCCTATTTTCGATTACTAATTCTGGGTTGCCAAAGAAGCATTTTGACTACTTCAGGAGAGAACTACTCCACAGCTATGGATTTGAGCACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAGGAGTCAAAAAGCAATTGGCTTACTATAAAACGTGCTCTACAGCTTGTGGTTGAAGACACTGATACGGCCAACCCCAATGATATTGCTTATGTCTTCTCTGGATATGCACCACTCAGCATTCGACTGGTCCAGCATGCCATTCGATCTGGATGGCGTCCTGTTGAAGAAATTTTGAAGCTACTGCCTGGACCTCATTTGGAAATGAAGAGGGGTGGATTCTCAAATAGCCCATCATTTGACACTTTATCAGGGATTCAATCCAGCATAGCCAAAGTACCTGATGGAAGGCGTGCTGTGGTGCTTGTTGTCTTTGTTGGGGGCGTTACCTTTGCAGAGATTTCTGCACTTCGATTTTTATGTACTCAGGAGGGAATGGCATATGATTTGATTATTGCAACAACAAAAATAGTCAATGGCCAAACCTTGGTTGAAACGTTTATGGAAAAGCTAGGTTGA
>Glyma10g35210.1 sequence type=predicted peptide gene model=Glyma10g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAQIPNLDNAPVNLTSIREHSQKELLNILKNVRGKKCLVIDPKLGDSLSLIIQTSILKEHGVELRHLSGDPIQTDCSKVVYIVHAQPKLMRFICSNIHNDVSKGLQREYHVYFVPRRTVVCEKVLEEEKLHNMVTIGEYPLYSVPMDEDVLSFELDLSYKECQVDGDTSSLWHIAKAIHKLEFSFGVIPNVRAKGKASVRVADILNRMQAEEPVNSSDMVVPEINTVILLDREVDMVTPLCSQLTYEGLLDEFLHINNGSVELDASIMGLQQEGKKTKVPLNSSDKLFKEIRDLNFEVVVQILRQKATSMKQDYTEMTTTTQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDMEHTIVEAQSYDICFEYIEELIHKQEPLTTVLRLLILFSITNSGLPKKHFDYFRRELLHSYGFEHIAMLNNLEKAGLFKKQESKSNWLTIKRALQLVVEDTDTANPNDIAYVFSGYAPLSIRLVQHAIRSGWRPVEEILKLLPGPHLEMKRGGFSNSPSFDTLSGIQSSIAKVPDGRRAVVLVVFVGGVTFAEISALRFLCTQEGMAYDLIIATTKIVNGQTLVETFMEKLG* >Glyma10g35210.2 sequence type=predicted peptide gene model=Glyma10g35210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRFICSNIHNDVSKGLQREYHVYFVPRRTVVCEKVLEEEKLHNMVTIGEYPLYSVPMDEDVLSFELDLSYKECQVDGDTSSLWHIAKAIHKLEFSFGVIPNVRAKGKASVRVADILNRMQAEEPVNSSDMVVPEINTVILLDREVDMVTPLCSQLTYEGLLDEFLHINNGSVELDASIMGLQQEGKKTKVPLNSSDKLFKEIRDLNFEVVVQILRQKATSMKQDYTEMTTTTQTVSELKDFVKKLNSLPEMTRHINLAQHLSTFTSKPSFLGQLDMEHTIVEAQSYDICFEYIEELIHKQEPLTTVLRLLILFSITNSGLPKKHFDYFRRELLHSYGFEHIAMLNNLEKAGLFKKQESKSNWLTIKRALQLVVEDTDTANPNDIAYVFSGYAPLSIRLVQHAIRSGWRPVEEILKLLPGPHLEMKRGGFSNSPSFDTLSGIQSSIAKVPDGRRAVVLVVFVGGVTFAEISALRFLCTQEGMAYDLIIATTKIVNGQTLVETFMEKLG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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