SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10380 | AT | Annotation by Michelle Graham. TAIR10: subunit of exocyst complex 8 | chr3:3219922-3228356 REVERSE LENGTH=1053 | SoyBase | E_val: 0 | ISS |
| GO:0006007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucose catabolic process | SoyBase | N/A | ISS |
| GO:0006904 | GO-bp | Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis | SoyBase | N/A | ISS |
| GO:0009846 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen germination | SoyBase | N/A | ISS |
| GO:0009860 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube growth | SoyBase | N/A | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0048354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: mucilage biosynthetic process involved in seed coat development | SoyBase | N/A | ISS |
| GO:0000145 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: exocyst | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR14146 | Panther | EXOCYST COMPONENET SEC8 | JGI | ISS | |
| PF04048 | PFAM | Sec8 exocyst complex component specific domain | JGI | ISS | |
| UniRef100_Q93YU5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Probable exocyst complex component 4 n=2 Tax=Arabidopsis thaliana RepID=EXOC4_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C32F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C32F related cluster n=1 Tax=unknown RepID=UPI000233C32F | SoyBase | E_val: 0 | ISS |
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Glyma10g35190 not represented in the dataset |
Glyma10g35190 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g32370 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g207900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35190.1 sequence type=CDS gene model=Glyma10g35190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAATTTTTGATGAGTTACCTTTGCCTTCAGAAAAAGCTTATTTGAGAGAAGACCTCTCTAGAATAGATGAGAGTTGGGTTGCTGCTCGTTTTGATTCACTACCTCATGTTGTTCACATTTTGACATCAAAAGACCGTGATGCTGCCGCTCAATTTTTGAAGGAGCAAAGTGATATTATTGAGGAGGTTGTGGATGAAGTAGTACATTCCTATCATAGTGGCTTCAATAGAGCTATCCAAAACTATTCCCAGATCTTGAAACTCTTCAGTGAATCCACTGAAAGTATATCTGTCTTAAAAGTAGATTTGGGAGAGGCCAAGAGGCGCCTTAGTGCCCGCAATAAGCAATTGCATCAACTATGGTATCGGTCAGTCACACTGCGACATATAATATCCTTATTGGATCAAATTGAAGACATTGCCAAGGTTCCGGCTCGCATCGAGAAACTCATTGCTGAGAAGCAATTTTATGCCGCGGTTCAATTGCATGTGCAATCAATACTGATGCTTGAGCGAGGCCTCCAAACTGTTGGGGCGCTTCAAGATGTCCGTTCTGAGTTAACGAAGTTACGTGGAGTCCTCTTTTATAAGATTTTGGAGGATTTGCATGCCCATTTATACAATAAGGGTGAATATAGTGCTGCTGGCTCAAGTTTGTTAGAGAATGATGACGAAATACCAACCACCACTGCTGTTGCACTTGCTGCACATAATTCACAACCTCTGTCTCGAAGAACAAGATCACTCAAAGGTGACAATCAGAATAATCTCCAGATTGATGGATCGTATAGGCCAGCATCTGTGGATGGAGGTTCTTTTGATGGCCATGATGAGGCAGATTTGAATGAGGAAGCTACCTTAGATGGGAATATGGCAACAACGAGAATCAATGGTAATGATATACCAAAGGATTCCAACAATGCTCTTCGTCAAATGCCAACATGGCTCTCAAATTCGACACCTGATGAATTTCTTGAAACAATTAGAAAAAGTGATGCTCCGCTTCATGTGAAGTATCTCCAGACCATGGTCGAGTGCCTTTGCATGCTTGGCAAAGTTGCAGCTGCTGGAGCTATTATATGCCAAAGATTGCGGCCAACACTTCACGAGATAATTACATCCAAGATTAAAGCTCATGCAGAGCTTTTGAATTCATCAAGGTCTAGCATTGGTCAGGATTCCCAGGCTGGAACAGGTAATCTGCACTTCATAAAAGGTCAACTAGAAAGTTATCAGTTGCCAAAACAGAAGCGTAAGAATGGAATATCTATTGCTGGAACTCTGTTGGCTGTGAGCCCTGTATCACCTCTTATGGCTCCTGGTGGGAAAGCACAGGTTGCTGCTAAGGAGCTTCTTGATTCAATTTTGGATGCTGTTGTTCGAATATTTGAGAATCATGTCATTGTTGGGGAGCTTTTGGAAGCAAAAGCAAGTCAGCATGCTGACATAAACACGCCAAAATCATTGCCAGTAGATGTAAATTGGAACCCTGATTCTGAAGCATCTCAAGTCACCGGAGGTTACAGCATAGGTTTCTCCCTGACAGTGTTACAGAGTGAATGCCAACAACTTATATGTGAAATTCTGCGGGCCACTCCTGAAGCAGCATCTGCTGATGCTGCTGTGCAAACAGCTAGGCTTGCGAGCAAAGTCCCTTCTAAAGATAAAAGGGATGGATCTGAAGATGGTCTTACCTTTGCATTTCGCTTTACAGATGCTTCAATATCTATTCCTAACCAGGGAGTTGATCTTGTTCGCCAAGGTTGGAGTAGGAAGGGTCCCAATGTGCTTCAAGAGGGTTATGGTTCTGCAGCAGTTTTGCCTGAGGAGGGCATATATTTAGCAGCATCCATATACCGACCTGTGCTTCAGTTCACGGATAAAGTTGCTTCAATGCTGCCAACAAAGTATTCCCAACTCGGCAATGATGGGTTGCTAGCTTTTGTGGAGAACTTTGTGAAGGACCACTTTTTACCAACTATGTTTGTAGACTACCGAAAAGGCGTACAGCAAGCCATATCGAGTCCAGCTGCATTTCGTCCAAGGGCACATGTTGCTACTACTTACACTTCATCAATTGAGAAGGGTCGACCTGTTTTACAAGGATTATTAGCTATAGATCACTTAACAAAGGAGGTGCTTGGCTGGGCACAAGCAATGCCCAAGTTCTCTAATGATCTGGTGAAGTATGTGCAAACTTTTCTGGAGAGGACTTATGAAAGATGCCGAACTGCATACATGGAGGCTGTTCTTGAGAAGCAGAGTTATATGCTTATTGGGAGGCATGATATTGAGAAGTTGATGAGGATTGACCCCTCAAGTGCATATTTACCGAATCTGCTTGGTCAGTTAAATGTGGAAAGTAATTCATCTGATGCTGAAACAATTGAGGCTGAATTAGAACTTAGTGAATTACTGCTAAGTTTGCGTCCTATTAAGCAGGAAAACCTAATCCATGATGACAACAAACTTATTCTGTTGGCATCCCTTAGTGACTCATTAGAGTATGTTGCAGACTCTATTGAAAGGCTTGGACAGACAACTCAAAGAGCATCAAATCATGTTGGGGGAAAATACCATCACAGTCATTCAGACAGTGCACCTACAAGGAGTTTAGTTTCATTTGCTCAAGATTATAGGAAACTGGCAATTGATTGCCTTAAGGTTTTACGCATAGAGATGCAATTGGAGACAGTATTCCATATGCAGGAAATGGCAAATACAGAATACTTGGATGACCAAGATGCTGAAGAGCCGGATGACTTCATCATTTCGCTCACTGCACAGATAACACGAAGAGATGAGGAAATGGCTCCTTTTATTTCAAATGCAAAGCGGAATTATATATTTGGTGGAATTTGTGGGGTTGCAGCAAATGCATCTGTCAAGGCTTTGGCGGATATGAAATCCATAAATCTTTTTGGTGTTCAGCAAATTTGTCGAAATGCTATTGCATTAGAACAGGCATTGGCAGCTATTCCATCCATAAATAGTGAAGCAGTGCAACAGAGATTGGATCGAGTCCGCACCTACTATGAACTATTGAACATGCCATTTGAGGCTTTGGTTGCCTTCATTACAGAACATATACACTTGTTCACCCCTGTGGAGTATGCCAAGCTTCTTAATGTTCAGGTTCCTGGAAGGGAAATTCCTCCTGATGCACAAGATAGATTATCTGAAATATTATCCGTGTAG
>Glyma10g35190.1 sequence type=predicted peptide gene model=Glyma10g35190 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGIFDELPLPSEKAYLREDLSRIDESWVAARFDSLPHVVHILTSKDRDAAAQFLKEQSDIIEEVVDEVVHSYHSGFNRAIQNYSQILKLFSESTESISVLKVDLGEAKRRLSARNKQLHQLWYRSVTLRHIISLLDQIEDIAKVPARIEKLIAEKQFYAAVQLHVQSILMLERGLQTVGALQDVRSELTKLRGVLFYKILEDLHAHLYNKGEYSAAGSSLLENDDEIPTTTAVALAAHNSQPLSRRTRSLKGDNQNNLQIDGSYRPASVDGGSFDGHDEADLNEEATLDGNMATTRINGNDIPKDSNNALRQMPTWLSNSTPDEFLETIRKSDAPLHVKYLQTMVECLCMLGKVAAAGAIICQRLRPTLHEIITSKIKAHAELLNSSRSSIGQDSQAGTGNLHFIKGQLESYQLPKQKRKNGISIAGTLLAVSPVSPLMAPGGKAQVAAKELLDSILDAVVRIFENHVIVGELLEAKASQHADINTPKSLPVDVNWNPDSEASQVTGGYSIGFSLTVLQSECQQLICEILRATPEAASADAAVQTARLASKVPSKDKRDGSEDGLTFAFRFTDASISIPNQGVDLVRQGWSRKGPNVLQEGYGSAAVLPEEGIYLAASIYRPVLQFTDKVASMLPTKYSQLGNDGLLAFVENFVKDHFLPTMFVDYRKGVQQAISSPAAFRPRAHVATTYTSSIEKGRPVLQGLLAIDHLTKEVLGWAQAMPKFSNDLVKYVQTFLERTYERCRTAYMEAVLEKQSYMLIGRHDIEKLMRIDPSSAYLPNLLGQLNVESNSSDAETIEAELELSELLLSLRPIKQENLIHDDNKLILLASLSDSLEYVADSIERLGQTTQRASNHVGGKYHHSHSDSAPTRSLVSFAQDYRKLAIDCLKVLRIEMQLETVFHMQEMANTEYLDDQDAEEPDDFIISLTAQITRRDEEMAPFISNAKRNYIFGGICGVAANASVKALADMKSINLFGVQQICRNAIALEQALAAIPSINSEAVQQRLDRVRTYYELLNMPFEALVAFITEHIHLFTPVEYAKLLNVQVPGREIPPDAQDRLSEILSV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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