SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39140 | AT | Annotation by Michelle Graham. TAIR10: pseudouridine synthase family protein | chr2:16330238-16333153 FORWARD LENGTH=410 | SoyBase | E_val: 3.00E-166 | ISS |
| GO:0000488 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | SoyBase | N/A | ISS |
| GO:0000489 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | SoyBase | N/A | ISS |
| GO:0001522 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pseudouridine synthesis | SoyBase | N/A | ISS |
| GO:0009451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA modification | SoyBase | N/A | ISS |
| GO:0032544 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plastid translation | SoyBase | N/A | ISS |
| GO:0009501 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: amyloplast | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0009982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: pseudouridine synthase activity | SoyBase | N/A | ISS |
| GO:0016866 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: intramolecular transferase activity | SoyBase | N/A | ISS |
| PTHR21600 | Panther | RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B | JGI | ISS | |
| PTHR21600:SF2 | Panther | RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B | JGI | ISS | |
| PF00849 | PFAM | RNA pseudouridylate synthase | JGI | ISS | |
| PF01479 | PFAM | S4 domain | JGI | ISS | |
| UniRef100_D7LCF4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Pseudouridine synthase family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7LCF4_ARALL | SoyBase | E_val: 2.00E-164 | ISS |
| UniRef100_I1LCX1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCX1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g35180 not represented in the dataset |
Glyma10g35180 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g32381 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g207800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35180.2 sequence type=transcript gene model=Glyma10g35180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CTTTTGAAAACCAGTAGAACAAGTAAAGTAGGCACTCCACTCCTAAAATCAACTTCTTATCCTTCTTACTTCATAGCAAACAGTTTGGAACCCCCCAAAAATGGGTGCAACGACGGCCATTGCCGCACTCTCTCTTCACTGCTTCTCCAAATCCCACACACACTTTTCACCCTTTCGCACTCTCCCTCGCCTCACATGCTCCTTCTCTTCCTCCATCAAATTCAACATCTCCTTCGCTCCCCCTAAGCCCAAGCCCAAGCCCGAACCCGACGCCTCAAACGAGCCCGACGGGCCGCTCCTCATCCCGTGGATCGTCCGGGGCGAGGACGGCAACCTCAGGCTCCAATCAGAACCTCCCCCGAGCCTCCTCAATGCCATCGCCACCGCCCAAACCGGAACCAAAAAGGACAATAAGCAAACCAAAACCACCGCCGCCACCGCCACCAACACCACTAAACCTCAAAAGGCTCGCTCCACAGCGCCGCCGCAGCATTCGAAGGCGGCGCGGCGGTTCTATAACCAAAACATCAAGGAATCCTCCGCCGCGCGCCTCAGCAAGGTTCTCGCCGCCTCCGGAGTTGCGTCCAGGAGAAGCTGCGAAGAGCTTATCTTCGAAGGGAAGGTTACGGTGAATGGTACCGTGTGTAATACGCCTCAGACTAAAGTTGATCCTGCGAAGGATGTTATCTATGTGAACGGGAACAGGCTTCCGAAGAGGCAGCCTCAGAAGGTTTATCTGGCATTGAACAAACCCAAAGGGTATATATGTTCATCTGGGGAGAACGAGTCTAAATCTGTGATAAGTTTATTTGATGATTACTTGAACAGTTGGGGTAAAAAGCATCCGGGAGTACCCACACCACGGTTATTTACTGTAGGGCGCCTTGACGTTGCTACCACTGGGTTAATTATTGTGACTAATGATGGAGATTTTGCTCAAAAGCTTTCGCATCCTTCATCAAATTTATCAAAAGAATACATTGCAACAATTGATGGTTTAGTTCACAAGAGGCACTTAATAGCCATAAGCGAGGGAACTACTGTTGAGGGTGTCCTTTGTGTGCCTGATGTTGTGGAGTTACTTCCACGTCAGCCAGAGATGCAAAGAACTCGAATTCGCATTGTGGTTCATGAAGGTAGGAAACATGAAGTTCGTGAACTCGTCAAAAGAGCTGGACTTGAGATTCATTCATTAAAGCGAGTACGCATTGTGCACACTACTTTCCGGAGTGTTTAACGTGAAGCCAATATCATGCTCTTGCAATCAGCATATATGTATAGTCTAGAAGAACTGGGAGAAGATTTTAAACTACTGCTTAGAAGAGATATGACTTTTTCCGATGGACGTGAACCAACCCGGCGGATTGCTGGTATCTTTATTGAAATTGTTGTAAACGGTGATTACGTGCCTGTATGTAAAATGATACAAGTTTAACCTAGAGCGCCTGTTCAAATTAAGGGACTACTCGGACTCTAATTTGGAAAAAAATAATAGAAAGAATGGAGATCGAAATTTCCGGAAATATTATTTTTTAGACTAAACTCAATTTTTCAATGATTGGGCTGCATATTAATAGAAAGAGGGATTTTTTTTCTGCACCCAACATTTT
>Glyma10g35180.1 sequence type=CDS gene model=Glyma10g35180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGCAACGACGGCCATTGCCGCACTCTCTCTTCACTGCTTCTCCAAATCCCACACACACTTTTCACCCTTTCGCACTCTCCCTCGCCTCACATGCTCCTTCTCTTCCTCCATCAAATTCAACATCTCCTTCGCTCCCCCTAAGCCCAAGCCCAAGCCCGAACCCGACGCCTCAAACGAGCCCGACGGGCCGCTCCTCATCCCGTGGATCGTCCGGGGCGAGGACGGCAACCTCAGGCTCCAATCAGAACCTCCCCCGAGCCTCCTCAATGCCATCGCCACCGCCCAAACCGGAACCAAAAAGGACAATAAGCAAACCAAAACCACCGCCGCCACCGCCACCAACACCACTAAACCTCAAAAGGCTCGCTCCACAGCGCCGCCGCAGCATTCGAAGGCGGCGCGGCGGTTCTATAACCAAAACATCAAGGAATCCTCCGCCGCGCGCCTCAGCAAGGTTCTCGCCGCCTCCGGAGTTGCGTCCAGGAGAAGCTGCGAAGAGCTTATCTTCGAAGGGAAGGTTACGGTGAATGGTACCGTGTGTAATACGCCTCAGACTAAAGTTGATCCTGCGAAGGATGTTATCTATGTGAACGGGAACAGGCTTCCGAAGAGGCAGCCTCAGAAGGTTTATCTGGCATTGAACAAACCCAAAGGGTATATATGTTCATCTGGGGAGAACGAGTCTAAATCTGTGATAAGTTTATTTGATGATTACTTGAACAGTTGGGGTAAAAAGCATCCGGGAGTACCCACACCACGGTTATTTACTGTAGGGCGCCTTGACGTTGCTACCACTGGGTTAATTATTGTGACTAATGATGGAGATTTTGCTCAAAAGCTTTCGCATCCTTCATCAAATTTATCAAAAGAATACATTGCAACAATTGATGGTTTAGTTCACAAGAGGCACTTAATAGCCATAAGCGAGGGAACTACTGTTGAGGGTGTCCTTTGTGTGCCTGATGTTGTGGAGTTACTTCCACGTCAGCCAGAGATGCAAAGAACTCGAATTCGCATTGTGGTTCATGAAGGTAGGAAACATGAAGTTCGTGAACTCGTCAAAAGAGCTGGACTTGAGATTCATTCATTAAAGCGAGTACGCATTGGTGGGTTTAGACTTCCACCAGACCTTGGGTTAGGAAAGTATATTGAGTTAAATAAAACGAATCTCAACGCATTGGGGTGGAAGAGCTAA >Glyma10g35180.2 sequence type=CDS gene model=Glyma10g35180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGTGCAACGACGGCCATTGCCGCACTCTCTCTTCACTGCTTCTCCAAATCCCACACACACTTTTCACCCTTTCGCACTCTCCCTCGCCTCACATGCTCCTTCTCTTCCTCCATCAAATTCAACATCTCCTTCGCTCCCCCTAAGCCCAAGCCCAAGCCCGAACCCGACGCCTCAAACGAGCCCGACGGGCCGCTCCTCATCCCGTGGATCGTCCGGGGCGAGGACGGCAACCTCAGGCTCCAATCAGAACCTCCCCCGAGCCTCCTCAATGCCATCGCCACCGCCCAAACCGGAACCAAAAAGGACAATAAGCAAACCAAAACCACCGCCGCCACCGCCACCAACACCACTAAACCTCAAAAGGCTCGCTCCACAGCGCCGCCGCAGCATTCGAAGGCGGCGCGGCGGTTCTATAACCAAAACATCAAGGAATCCTCCGCCGCGCGCCTCAGCAAGGTTCTCGCCGCCTCCGGAGTTGCGTCCAGGAGAAGCTGCGAAGAGCTTATCTTCGAAGGGAAGGTTACGGTGAATGGTACCGTGTGTAATACGCCTCAGACTAAAGTTGATCCTGCGAAGGATGTTATCTATGTGAACGGGAACAGGCTTCCGAAGAGGCAGCCTCAGAAGGTTTATCTGGCATTGAACAAACCCAAAGGGTATATATGTTCATCTGGGGAGAACGAGTCTAAATCTGTGATAAGTTTATTTGATGATTACTTGAACAGTTGGGGTAAAAAGCATCCGGGAGTACCCACACCACGGTTATTTACTGTAGGGCGCCTTGACGTTGCTACCACTGGGTTAATTATTGTGACTAATGATGGAGATTTTGCTCAAAAGCTTTCGCATCCTTCATCAAATTTATCAAAAGAATACATTGCAACAATTGATGGTTTAGTTCACAAGAGGCACTTAATAGCCATAAGCGAGGGAACTACTGTTGAGGGTGTCCTTTGTGTGCCTGATGTTGTGGAGTTACTTCCACGTCAGCCAGAGATGCAAAGAACTCGAATTCGCATTGTGGTTCATGAAGGTAGGAAACATGAAGTTCGTGAACTCGTCAAAAGAGCTGGACTTGAGATTCATTCATTAAAGCGAGTACGCATTGTGCACACTACTTTCCGGAGTGTTTAA
>Glyma10g35180.1 sequence type=predicted peptide gene model=Glyma10g35180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGATTAIAALSLHCFSKSHTHFSPFRTLPRLTCSFSSSIKFNISFAPPKPKPKPEPDASNEPDGPLLIPWIVRGEDGNLRLQSEPPPSLLNAIATAQTGTKKDNKQTKTTAATATNTTKPQKARSTAPPQHSKAARRFYNQNIKESSAARLSKVLAASGVASRRSCEELIFEGKVTVNGTVCNTPQTKVDPAKDVIYVNGNRLPKRQPQKVYLALNKPKGYICSSGENESKSVISLFDDYLNSWGKKHPGVPTPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATIDGLVHKRHLIAISEGTTVEGVLCVPDVVELLPRQPEMQRTRIRIVVHEGRKHEVRELVKRAGLEIHSLKRVRIGGFRLPPDLGLGKYIELNKTNLNALGWKS* >Glyma10g35180.2 sequence type=predicted peptide gene model=Glyma10g35180 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGATTAIAALSLHCFSKSHTHFSPFRTLPRLTCSFSSSIKFNISFAPPKPKPKPEPDASNEPDGPLLIPWIVRGEDGNLRLQSEPPPSLLNAIATAQTGTKKDNKQTKTTAATATNTTKPQKARSTAPPQHSKAARRFYNQNIKESSAARLSKVLAASGVASRRSCEELIFEGKVTVNGTVCNTPQTKVDPAKDVIYVNGNRLPKRQPQKVYLALNKPKGYICSSGENESKSVISLFDDYLNSWGKKHPGVPTPRLFTVGRLDVATTGLIIVTNDGDFAQKLSHPSSNLSKEYIATIDGLVHKRHLIAISEGTTVEGVLCVPDVVELLPRQPEMQRTRIRIVVHEGRKHEVRELVKRAGLEIHSLKRVRIVHTTFRSV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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