SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G35630 | AT | Annotation by Michelle Graham. TAIR10: ARM repeat superfamily protein | chr2:14966828-14980361 FORWARD LENGTH=1978 | SoyBase | E_val: 0 | ISS |
| GO:0000226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization | SoyBase | N/A | ISS |
| GO:0000910 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis | SoyBase | N/A | ISS |
| GO:0000911 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0007017 | GO-bp | Annotation by Michelle Graham. GO Biological Process: microtubule-based process | SoyBase | N/A | ISS |
| GO:0007129 | GO-bp | Annotation by Michelle Graham. GO Biological Process: synapsis | SoyBase | N/A | ISS |
| GO:0007131 | GO-bp | Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0009920 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell plate formation involved in plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010564 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle process | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0051322 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anaphase | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005819 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: spindle | SoyBase | N/A | ISS |
| GO:0005874 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: microtubule | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0009524 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phragmoplast | SoyBase | N/A | ISS |
| GO:0009574 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: preprophase band | SoyBase | N/A | ISS |
| GO:0030981 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cortical microtubule cytoskeleton | SoyBase | N/A | ISS |
| GO:0008017 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: microtubule binding | SoyBase | N/A | ISS |
| KOG1820 | KOG | Microtubule-associated protein | JGI | ISS | |
| PTHR12609 | Panther | MICROTUBULE ASSOCIATED PROTEIN XMAP215 | JGI | ISS | |
| PF02985 | PFAM | HEAT repeat | JGI | ISS | |
| PF12348 | PFAM | CLASP N terminal | JGI | ISS | |
| UniRef100_B9T7P5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Microtubule associated protein xmap215, putative n=1 Tax=Ricinus communis RepID=B9T7P5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233C32D | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233C32D related cluster n=1 Tax=unknown RepID=UPI000233C32D | SoyBase | E_val: 0 | ISS |
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Glyma10g35140 not represented in the dataset |
Glyma10g35140 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g32430 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g207500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35140.2 sequence type=CDS gene model=Glyma10g35140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGGAGGAAGAGAAGTTGCTGAAGGAGGCGAAGAAACTGCCATGGGAGGATCGCCTCTTCCACAAGAATTGGAAGGTGCGCAACGAGGCGAACATCGATTTGGCCTCGCTCTGCGACTCCATCACCGATCCCAAGGACTCCCGCATCCGCGAATTCGGTCATTTTTTCAGAAAGACGGTGGCGGATTCGAATGCGCCGGTGCAGGAGAAGGCGCTCGATGCGTTGATTGCTTACTTGCGAGCTGCCGACGCCGACGCCTCGAGGTACGGGAAGGAAGTCTGTGATGCGGTTGTGGCGAAATGTCTGACGGGGAGGCCGAAGACGGTGGAGAAGGCTCAGGCAGTGTTTTTGCTATGGATTGAATTAGAGGCCGTTGATGCGTTTCTGGATGCAATGGAGAAAGCAATAAAAAACAAAGTTGCTAAAGCGGTGGTACCTGCAATAGATGTTATGTTTCAAGCTTTAAGTGATTTTGGAGCAAAAATTGTGCCTCCAAAAAGAATTTTGAAGATGCTTCCGGAACTCTTTGATCATCAAGATCAAAATGTTCGTGCATCCTCTAAAGGGTTGACTCTTGAACTTTGCCGTTGGATTGGTAAAGATAGTGTAAAATCAATTTTGTTTGAGAAAATGAGAGACACGATGAAAAAAGAGCTAGAAGCAGAGCTTGTAAATGTTACAGGAACAGCAAAGCCCACACGCAAAATAAGATCTGAGCAAGATAAGGAACCTGAACAGGAAGCTGTGTCAGAGGTTGTGGGTCCTGGCCCTTGTGAAGAATCTGGGAATGATGCTCCTCAAGAAATCGACGAATATGAACTTGTTGATCCTGTTGATATATTGACTCCTTTGGAGAAGTCTGGATTTTGGGATGGAGTGAAAGCTACCAAATGGTCTGAACGGAAGGAGGCTGTTGCTGAGCTAACAAAGCTTGCATCAACTAAAAGAATTTCTCCTGGTGATTTCTCTGAAGTTTGTCGGACCTTAAAAAAGCTTATTACAGATGTGAATATTGCTGTTGCAGTTGAAGCTGTCCAGGCTATTGGCAATCTTGCTCGTGGATTAAGAACTCATTTTTCTGCAAGTTCTCGTTTTTTATTGCCTGTTTTACTTGAAAAATTGAAGGAGAAAAAACCTGCTTTGGCTGAGGCATTGATGCAGACTCTTCAAGCAATGCATAAAGCTGGATGCATCAGCCTTATAGATATTGTTGAAGATGTTAAGACAGCCACAAAAAACAAAGTCCCTCTTGTGCGATCGTTAACCTTGACCTGGGTGACTTTTTGTATTGAAACAAGTAACAAGGTTGTTATTACAAAGGTGCACAAGGATTATGTGCCAATCTGTATGGAGTGCCTAAATGACGGTACTCCCGAAGTCAGGGATGCTGCCTTTTCAGCATTGGCAGGAATAGCTAAGTCAGTTGGCATGAGACCTCTGGAGAGATCGTTGGAGAAACTTGATGATGTTAGAAGAAAGAAGCTTTCGGAAATGATTTCAGGTTCTGAAGATGCTGTGCCTGGTGCTTCTTCTGCAGCTTCTGTGCAAAATACACGCGTAAGTGCATCTTCTGCAGAGACCTCTGAAAGTGTACTTGTCAAAAGGTCGGCAGCAGGCATGCTTAGTGGAAAGAGACCTGTTCAGTCAGTTCCTGCTGTTAAGAAAGTGGGGGTTGTAAAGTTGGGGACAAACAAAAAAACAGATGGAGTTCCACAGGTGAAGGCTTTAAAATCAGTTGAACCACCTGAGGATGTTGAGCCTACTGAGATGAGTCTTGAAGAGATTGAAAGCCGAATAGGTTCTCTTATAGAGTCGGATACTATCACTCTATTAAAAAGTGCTGTGTGGAAGGAGCGTCTAGAAGCCATTTCTTCACTGAAACAGCAAGTAGAAGGCTTACAGGACCTTGACCAATCAGTAGAAATTTTGATTCGTTTAGTCTGCACTTTACCTGGATGGGGCGAGAAAAATGTTCAGGTTCAGCAGCAGGTTATTGAAGTTATCACTCATATAAGTTCAACTGCAACTAAATTTCCAAAGAAGTGTGTAGTACTTTGCCTTTCGGGACTAAGTGAACGTGTAGCAGATATTAAGACACGTGCACATGCTATGAAATGTCTGAGTACCTTGTCTGAAGCAGTTGGTCCAGGATTCATTTTTGAAAGACTTTACAAGATCATGAAGGAGCATAAGAATCCCAAGGTTCTTAGTGAGGGAATTTTGTGGATGGTTTCTGCTGTTGAAGATTTTGGTGTCTCACATATAAAGCTTAAGGATTTAATTGATTTTCTTAAAGAAATTGGGCTGCAGTCAAGTAATGCTGCGACTAGAAATGCATCAATTAAGTTCTTGGGTGTTCTGCATAGATTTGTTGGTCCAGACATTAAAGGGTTTCTTACTGATGTAAAGCCTGCACTGCTCAGTGCCCTGGATACAGAGTATGAGAAGAATCCATTTGAGGGAGCTTCTGCAGTTACCAAGAGAACTGTCAGGGCAAAAGACTCATCTTCAACTGTTGTTGCTGGTGGACTGGATAGCTTGCCTCGGGAAGACATCAGTGGAAAGATCTCACCAACTCTCCTGAAGAGCTTGGAAAGCCCTGATTGGAAGGTTCGTATGGAGTCTGTTGATGCTGTAAACAAAATATTGGAAGAGGCTAATAAGCGCATTCAAGCAACTGGAACTGGTGAGTTGTTTGGGGCTCTTAGGGGACGACTCCTTGATAGCAACAAAAACATTGTCATGGCTTCCTTGACAGCAATTGGCAATGTTGCATCAGCAATGGGTCAAGCTGTAGAGAAGGCAAGCAAGGGTATTCTGTCTGATATATTGAAATGTCTTGGTGACAACAAGAAGCACATGAGAGAATGTGTACTGAATACCTTAGATGCTTGGCTGGCTGCTGTCCATCTGGATAAAATGGTTCCGTATATTGCAATTGCTTTGATGGACTCTAAACTTGGTGCGGAAGGGCGTAAAGATCTTTTTGATTGGTTATCGAGGCAACTTTCTGGGTTAAGTAGTTTTGCTGAAGCTGCACAACTGCTGAAGCCTGCCTCTTCTGCAATGACAGATAAATCTTCCGATGTTCGCAAGGCATCAGAGGCTTGTATTAATGAGATACTGAGAGTTAGTGGACATGAAATGATCGAAAAGATGGTTAAAGACATTCATGGACCAGCACTGACACTAATTGTTGAGAAGTTGAAACCATATGGAGCTTTTCAAGAGTCATTTGAGTCAGGTAGAGCAGTTTCAGTGGGTGCAATATCAAAAGCAAAGGCTGGGAAATCAACTGCCAATGGTGTTTCAAAACATGGAAATAGAGCTGTATCTTCTAGAGTTGTGGCAACAAAAGGTGCCAAGTCTGAATCAATATCTGTTCAAGATATAGCGGTCCAGTCTCAAGCCTTGTTAAATATCAAGGATTCAAACAAGGAAGATCGAGAGAGAATGGTGGTTCGAAGGTTTAAGTTTGAGGACCCACGTATTGAGCAAATTCAAGATCTTGAGAATGATATGATGAAGTATTTCAGAGAAGATTTACATAGGAGACTCTTAAGTGCAGATTTTAAGAAGCAAGTTGATGGACTTGAAATGCTGCAGAAGGCACTCCCATCCATTGCTAAGGAAGTTATAGAAGTTTTGGACATTCTTCTGAGGTGGTTTGTGTTGCAGTTCTGCAAATCAAACACAACATGTCTATTGAAGGTGCTGGAATTTCTTCCGGAACTGCTTGACACTTTGAAGGACGAGGGGTACTCTTTGACCGAATCTGAAGGGGCAGTGTTTCTTCCATGCTTAGTAGAGAAGTTAGGGCATAACATTGAGAAAGTACGAGAAAAAATGCGGGAGCTGACAAAACAATTTGTTGCCATATACTCTGCGTGTAAATGTTTCCCTTATATATTAGAGGGTTTGCGCTCAAAGAATAACCGAACTCGAATTGAATGTGCTGATCTTGTTGGATTTATTATTGATCATCATGGTGCAGAGATTAGTGGGCAGCTAAAGTCATTGCAAATTGTTGCAAGTTTGACTGCAGAACGGGATGGTGAAACTAGGAAAGCTGCATTAAATACACTAGCTACTGGTTATAAGATTCTAGGTGAGGACATATGGAGATATGTTGGGAAGCTAACTGATGCTCAAAAGAGCATGTTAGATGATAGATTTAAGTGGAAGGTTCGGGAGATGGAAAAGAAGAAGGAAGGAAAGCCTGGTGAAGCAAGGGCCATTTCAAGGCGCTCAGTCAGGGAAAATGGGTCTGATGTCGCAGAACAAAGTGGAGAAATGACTAGATCTCTTGCTGGTCCAATATTGAGGAAAAATTATGGTCAACCTGATAGTAACATTGATAGACAGTTGATGCCCCGTCCCATGACTGTTGCTAGTGGCCCCACAGATTGGAATGAAGCACTCGATATTATTTCTTTTGGTTCTCCTGAGCAGTCTGTTGATGGAATGAAAGTTATTTGTCATGAGTTAGCTCAGGCCACTAGTGATCCTGAAGGAAGTGCTATGGATGAACTTGTGAAAGATGCAGATAGGCTAGTTTCATGCCTTGCTAATAAGGTCGCAAGAACTTTTGACTTCAGTTTGACTGGTGGTGCCTCATCACGATCTTGTAAATATGTGCTGAACACTCTCATGCAGACTTTTCAGAATAAAAGATTAGCGCATGCTGTAAAGGAGAGCACACTTGACAGTCTCATTACTGAGCTTCTTCTGTGGCTCTTGGATGATAGGGTTCCTCATATGGATGATGGAAGCCAATTGTTGAAAGCTTTAAATGTATTGATGCTTAAGATTCTGGATAATGCAGATAGGACTTCATCCTTTGTTGTCTTGATCAATCTTTTACGGCCACTAGATTCATCCAGGTGGCCTTCACCAGCATCAAATGAGTCCCTTGCTTCCAGAAATCAGAAGTTCTCTGATCTAGTTGTGAAATGCCTTATCAAGCTTACAAAGGTTCTTCAGAGCACTATCTATGATGTTGACCTTGATCGCATACTTCAAAGCATCCATTTGTACCTGCAAGACTTGGGAATGGAGGAAATTAGGAGAAGGGCTGGTGCTGATGACAAACCTTTACGAATGGTAAAAACTGTTCTGCATGAACTTGTCAAGCTTCGTGGTGCAGCAATAAAGGGTCATCTTTCAATGGTTCCTATCGATGCTAAACCTCAACCCATCATCCTTGCCTACATTGAACTTAATCTTGAGACTTTGGCTGCTGCAAGAATGTTGACTGCATCTGGACCTGGGGGACAAAACCATTGGGGTGATTCAGCAACCAATAATTCAGCCTCGGGCACCCATTCGGCTGATGCCCAATTAAAGCAAGAGCTTGCTGCTATATTTAAGAAGATTGGAGAGAAGCAAACTTGCACAATTGGTCTATATGAACTATATCGGATTACCCAATTGTACCCAAAGGTTGACATATTTGCTCAGCTTCAAAATGCTAGTGAGGCATTTCGCACCTACATTAGAGATGGTCTTGCTCAGATGGAGAAGAATGCTGCAGCTGGAAGAACTCCTTCGAGTTTACCGATGCCAACCCCTCCACCGGCATCTTTAAATATATCTTCCCCTGATTTTGCACCTCTCTCACCTGTAAACGCAAATCCATTGGGTGATGCTAAATTAAATGTGAAACCTGAGCCAACAAATTTTAATTTACCCCCTTCATCATACAATGAGGAGAATAGGGCTGTGAATGCCATTACTTCTAGAGCATTAAATTCTGACTATACATTAGGTGACCAAAGAAATGATAGATTTATGACAGGAGTAACCAGTGGAACATTGGATGCCATCAGAGAGAGGATGAAGAGCATGCAATTAGCAGCTGCTGCTGGGAGTACAGAATCTGGTGGTAGGCACTTAACAAGTGCAAATGACAACTTCAATCAAGGACTTCCTCCTCCTAGTCAGATTCCTCATGCATCAGAGCATGTTGGTACTGAGAATACAATGCACGGTGGCGTACTTCCTATGGATGAGAAAGCATTGTCCGGGCTTCAAGCGCGGATGGAAAGATTGAAAAGTGGATCTCTTGAACCTCTGTAA
>Glyma10g35140.2 sequence type=predicted peptide gene model=Glyma10g35140 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSEEEKLLKEAKKLPWEDRLFHKNWKVRNEANIDLASLCDSITDPKDSRIREFGHFFRKTVADSNAPVQEKALDALIAYLRAADADASRYGKEVCDAVVAKCLTGRPKTVEKAQAVFLLWIELEAVDAFLDAMEKAIKNKVAKAVVPAIDVMFQALSDFGAKIVPPKRILKMLPELFDHQDQNVRASSKGLTLELCRWIGKDSVKSILFEKMRDTMKKELEAELVNVTGTAKPTRKIRSEQDKEPEQEAVSEVVGPGPCEESGNDAPQEIDEYELVDPVDILTPLEKSGFWDGVKATKWSERKEAVAELTKLASTKRISPGDFSEVCRTLKKLITDVNIAVAVEAVQAIGNLARGLRTHFSASSRFLLPVLLEKLKEKKPALAEALMQTLQAMHKAGCISLIDIVEDVKTATKNKVPLVRSLTLTWVTFCIETSNKVVITKVHKDYVPICMECLNDGTPEVRDAAFSALAGIAKSVGMRPLERSLEKLDDVRRKKLSEMISGSEDAVPGASSAASVQNTRVSASSAETSESVLVKRSAAGMLSGKRPVQSVPAVKKVGVVKLGTNKKTDGVPQVKALKSVEPPEDVEPTEMSLEEIESRIGSLIESDTITLLKSAVWKERLEAISSLKQQVEGLQDLDQSVEILIRLVCTLPGWGEKNVQVQQQVIEVITHISSTATKFPKKCVVLCLSGLSERVADIKTRAHAMKCLSTLSEAVGPGFIFERLYKIMKEHKNPKVLSEGILWMVSAVEDFGVSHIKLKDLIDFLKEIGLQSSNAATRNASIKFLGVLHRFVGPDIKGFLTDVKPALLSALDTEYEKNPFEGASAVTKRTVRAKDSSSTVVAGGLDSLPREDISGKISPTLLKSLESPDWKVRMESVDAVNKILEEANKRIQATGTGELFGALRGRLLDSNKNIVMASLTAIGNVASAMGQAVEKASKGILSDILKCLGDNKKHMRECVLNTLDAWLAAVHLDKMVPYIAIALMDSKLGAEGRKDLFDWLSRQLSGLSSFAEAAQLLKPASSAMTDKSSDVRKASEACINEILRVSGHEMIEKMVKDIHGPALTLIVEKLKPYGAFQESFESGRAVSVGAISKAKAGKSTANGVSKHGNRAVSSRVVATKGAKSESISVQDIAVQSQALLNIKDSNKEDRERMVVRRFKFEDPRIEQIQDLENDMMKYFREDLHRRLLSADFKKQVDGLEMLQKALPSIAKEVIEVLDILLRWFVLQFCKSNTTCLLKVLEFLPELLDTLKDEGYSLTESEGAVFLPCLVEKLGHNIEKVREKMRELTKQFVAIYSACKCFPYILEGLRSKNNRTRIECADLVGFIIDHHGAEISGQLKSLQIVASLTAERDGETRKAALNTLATGYKILGEDIWRYVGKLTDAQKSMLDDRFKWKVREMEKKKEGKPGEARAISRRSVRENGSDVAEQSGEMTRSLAGPILRKNYGQPDSNIDRQLMPRPMTVASGPTDWNEALDIISFGSPEQSVDGMKVICHELAQATSDPEGSAMDELVKDADRLVSCLANKVARTFDFSLTGGASSRSCKYVLNTLMQTFQNKRLAHAVKESTLDSLITELLLWLLDDRVPHMDDGSQLLKALNVLMLKILDNADRTSSFVVLINLLRPLDSSRWPSPASNESLASRNQKFSDLVVKCLIKLTKVLQSTIYDVDLDRILQSIHLYLQDLGMEEIRRRAGADDKPLRMVKTVLHELVKLRGAAIKGHLSMVPIDAKPQPIILAYIELNLETLAAARMLTASGPGGQNHWGDSATNNSASGTHSADAQLKQELAAIFKKIGEKQTCTIGLYELYRITQLYPKVDIFAQLQNASEAFRTYIRDGLAQMEKNAAAGRTPSSLPMPTPPPASLNISSPDFAPLSPVNANPLGDAKLNVKPEPTNFNLPPSSYNEENRAVNAITSRALNSDYTLGDQRNDRFMTGVTSGTLDAIRERMKSMQLAAAAGSTESGGRHLTSANDNFNQGLPPPSQIPHASEHVGTENTMHGGVLPMDEKALSGLQARMERLKSGSLEPL*
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