SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G10405 | AT | Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: chloroplast; Has 44 Blast hits to 44 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | chr3:3233978-3235118 REVERSE LENGTH=212 | SoyBase | E_val: 1.00E-68 | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| UniRef100_I1LCW0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LCW0_SOYBN | SoyBase | E_val: 5.00E-145 | ISS |
| UniRef100_Q015I8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: WGS project CAID00000000 data, contig chromosome 07 n=1 Tax=Ostreococcus tauri RepID=Q015I8_OSTTA | SoyBase | E_val: 9.00E-18 | ISS |
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Glyma10g35130 not represented in the dataset |
Glyma10g35130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g32438 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g207400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g35130.2 sequence type=transcript gene model=Glyma10g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTGAGGTGAATGTAAGTAAAACTCTTTTACACGTATCAATCATTTTATCACGTGATTTTCTTATCACTATATAATAATATAAACGTATCATTATCTGCATAGTAGAACAAAATCAGAGAAACTTGGAGCAGCTGCAAAATCATGTTATCTGCTATTGCCTTTGGATTCTCAGCGAATTGGTGGTTGCGCTGTCACGGGCGAACGCCTCCTCCTTTATCTTTTCCGGTTTCAGTGTCTTATTCTTCCTCTTTCAACTCCAACTCAACTAAGTTCAACTATATTCATAGAGCATCCTCTGAAGGACTTCCTAATGAGTTGGTTGAAGACTCAAAATTTGTTCCTTTGAATGAGGAGGATCCTATATATGGTCCACCTGCCTTATTGTTGTTGGGCTTTGAAGCAGATGAAGCTTTGAAGATTCGACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTAAAGGTCATCTATTGTACTGAAGACATGATTATGCGTTCGCTTTGGGAGGCAATGCATACAACACAACCCAATGTAGAAGATGTCAAGATAGCCAAGTCACTTCCTCGGATATGCTTCTTATCTGGTTTAAGTGGAGAGGAGATGATGATGTTCATAGATTCTTTCCCCGAAACTGGTAACAAAAACATGATCACATCCTGAATTATGCCCTTAGAATCTGTTGAAGATGAAGAAATCTTTCTTTCTTAATATTTCTGAGTCTTGGCAGATTTCACTACAGTTTGGAGTTTATGTTATGCAGGACTAAAACCAGCTGCATTTGCGGCACTTGTTCCGAACAGTGCTAATAAACCACTGGAGGAGTTGATAGATGAAATAATGGGAGACCATGAGATGTTGGTATGTATTTTGTTTCCAAAACCAATTCTTATCATTTTCAATGAGCTTATGATTATAGAAAAAGATCTTTTATGACTGCAGACTGGAGAACAGCTATGAAGAGATTGGAAAAGAGATCTGATCTGATTGAAACCAACAATTTTTTGCAGTATCAGGGCATCAAACTATGCATTATAAAATATAAATCCCAATCTACTGAGGATTTTAAGTATATGAAATACTGTCTTTTGTGACGCAAGTTAGCAACTGATTGTTCCTAACTGTTTAATTAGTACTTAATTGGATATTCTTTTGTTACTGCCTACTTGAAAACATGGAAGGAATCTCTTATTCTTTTGTTAATTTCACGTTCTAAAACTCGTAAAGAGGTGATGAAAGTTGAGACTCAAGGCAAAAT >Glyma10g35130.3 sequence type=transcript gene model=Glyma10g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTGAGGTGAATGTAAGTAAAACTCTTTTACACGTATCAATCATTTTATCACGTGATTTTCTTATCACTATATAATAATATAAACGTATCATTATCTGCATAGTAGAACAAAATCAGAGAAACTTGGAGCAGCTGCAAAATCATGTTATCTGCTATTGCCTTTGGATTCTCAGCGAATTGGTGGTTGCGCTGTCACGGGCGAACGCCTCCTCCTTTATCTTTTCCGGTTTCAGTGTCTTATTCTTCCTCTTTCAACTCCAACTCAACTAAGTTCAACTATATTCATAGAGCATCCTCTGAAGGACTTCCTAATGAGTTGGTTGAAGACTCAAAATTTGTTCCTTTGAATGAGGAGGATCCTATATATGGTCCACCTATTCGACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTAAAGGTCATCTATTGTACTGAAGACATGATTATGCGTTCGCTTTGGGAGGCAATGCATACAACACAACCCAATGTAGAAGATGTCAAGATAGCCAAGTCACTTCCTCGGATATGCTTCTTATCTGGTTTAAGTGGAGAGGAGATGATGATGTTCATAGATTCTTTCCCCGAAACTGGACTAAAACCAGCTGCATTTGCGGCACTTGTTCCGAACAGTGCTAATAAACCACTGGAGGAGTTGATAGATGAAATAATGGGAGACCATGAGATGTTGACTGGAGAACAGCTATGAAGAGATTGGAAAAGAGATCTGATCTGATTGAAACCAACAATTTTTTGCAGTATCAGGGCATCAAACTATGCATTATAAAATATAAATCCCAATCTACTGAGGATTTTAAGTATATGAAATACTGTCTTTTGTGACGCAAGTTAGCAACTGATTGTTCCTAACTGTTTAATTAGTACTTAATTGGATATTCTTTTGTTACTGCCTACTTGAAAACATGGAAGGAATCTCTTATTCTTTTGTTAATTTCACGTTCTAAAACTCGTAAAGAGGTGATGAAAGTTGAGACTCAAGGCAAAAT
>Glyma10g35130.1 sequence type=CDS gene model=Glyma10g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTATCTGCTATTGCCTTTGGATTCTCAGCGAATTGGTGGTTGCGCTGTCACGGGCGAACGCCTCCTCCTTTATCTTTTCCGGTTTCAGTGTCTTATTCTTCCTCTTTCAACTCCAACTCAACTAAGTTCAACTATATTCATAGAGCATCCTCTGAAGGACTTCCTAATGAGTTGGTTGAAGACTCAAAATTTGTTCCTTTGAATGAGGAGGATCCTATATATGGTCCACCTGCCTTATTGTTGTTGGGCTTTGAAGCAGATGAAGCTTTGAAGATTCGACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTAAAGGTCATCTATTGTACTGAAGACATGATTATGCGTTCGCTTTGGGAGGCAATGCATACAACACAACCCAATGTAGAAGATGTCAAGATAGCCAAGTCACTTCCTCGGATATGCTTCTTATCTGGTTTAAGTGGAGAGGAGATGATGATGTTCATAGATTCTTTCCCCGAAACTGGACTAAAACCAGCTGCATTTGCGGCACTTGTTCCGAACAGTGCTAATAAACCACTGGAGGAGTTGATAGATGAAATAATGGGAGACCATGAGATGTTGACTGGAGAACAGCTATGA >Glyma10g35130.2 sequence type=CDS gene model=Glyma10g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTATCTGCTATTGCCTTTGGATTCTCAGCGAATTGGTGGTTGCGCTGTCACGGGCGAACGCCTCCTCCTTTATCTTTTCCGGTTTCAGTGTCTTATTCTTCCTCTTTCAACTCCAACTCAACTAAGTTCAACTATATTCATAGAGCATCCTCTGAAGGACTTCCTAATGAGTTGGTTGAAGACTCAAAATTTGTTCCTTTGAATGAGGAGGATCCTATATATGGTCCACCTGCCTTATTGTTGTTGGGCTTTGAAGCAGATGAAGCTTTGAAGATTCGACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTAAAGGTCATCTATTGTACTGAAGACATGATTATGCGTTCGCTTTGGGAGGCAATGCATACAACACAACCCAATGTAGAAGATGTCAAGATAGCCAAGTCACTTCCTCGGATATGCTTCTTATCTGGTTTAAGTGGAGAGGAGATGATGATGTTCATAGATTCTTTCCCCGAAACTGGTAACAAAAACATGATCACATCCTGA >Glyma10g35130.3 sequence type=CDS gene model=Glyma10g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTATCTGCTATTGCCTTTGGATTCTCAGCGAATTGGTGGTTGCGCTGTCACGGGCGAACGCCTCCTCCTTTATCTTTTCCGGTTTCAGTGTCTTATTCTTCCTCTTTCAACTCCAACTCAACTAAGTTCAACTATATTCATAGAGCATCCTCTGAAGGACTTCCTAATGAGTTGGTTGAAGACTCAAAATTTGTTCCTTTGAATGAGGAGGATCCTATATATGGTCCACCTATTCGACAGCTTTTGAAAGAGTTGGATGGTGAATTCCTAAAGGTCATCTATTGTACTGAAGACATGATTATGCGTTCGCTTTGGGAGGCAATGCATACAACACAACCCAATGTAGAAGATGTCAAGATAGCCAAGTCACTTCCTCGGATATGCTTCTTATCTGGTTTAAGTGGAGAGGAGATGATGATGTTCATAGATTCTTTCCCCGAAACTGGACTAAAACCAGCTGCATTTGCGGCACTTGTTCCGAACAGTGCTAATAAACCACTGGAGGAGTTGATAGATGAAATAATGGGAGACCATGAGATGTTGACTGGAGAACAGCTATGA
>Glyma10g35130.1 sequence type=predicted peptide gene model=Glyma10g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSAIAFGFSANWWLRCHGRTPPPLSFPVSVSYSSSFNSNSTKFNYIHRASSEGLPNELVEDSKFVPLNEEDPIYGPPALLLLGFEADEALKIRQLLKELDGEFLKVIYCTEDMIMRSLWEAMHTTQPNVEDVKIAKSLPRICFLSGLSGEEMMMFIDSFPETGLKPAAFAALVPNSANKPLEELIDEIMGDHEMLTGEQL* >Glyma10g35130.2 sequence type=predicted peptide gene model=Glyma10g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSAIAFGFSANWWLRCHGRTPPPLSFPVSVSYSSSFNSNSTKFNYIHRASSEGLPNELVEDSKFVPLNEEDPIYGPPALLLLGFEADEALKIRQLLKELDGEFLKVIYCTEDMIMRSLWEAMHTTQPNVEDVKIAKSLPRICFLSGLSGEEMMMFIDSFPETGNKNMITS* >Glyma10g35130.3 sequence type=predicted peptide gene model=Glyma10g35130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLSAIAFGFSANWWLRCHGRTPPPLSFPVSVSYSSSFNSNSTKFNYIHRASSEGLPNELVEDSKFVPLNEEDPIYGPPIRQLLKELDGEFLKVIYCTEDMIMRSLWEAMHTTQPNVEDVKIAKSLPRICFLSGLSGEEMMMFIDSFPETGLKPAAFAALVPNSANKPLEELIDEIMGDHEMLTGEQL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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