Glyma10g35111 - SoyBase

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Report for Sequence Feature Glyma10g35111

Feature Type:	gene_model
Chromosome:	Gm10
Start:	43292051
stop:	43298020
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g35111

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G54880	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G25360.2); Has 137 Blast hits to 137 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). \| chr3:20337078-20337786 REVERSE LENGTH=112	SoyBase	E_val: 3.00E-34	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_UPI0001B63626	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0001B63626 related cluster n=1 Tax=unknown RepID=UPI0001B63626	SoyBase	E_val: 1.00E-86	ISS

Expression Patterns of Glyma10g35111

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g35111 not represented in the dataset	Glyma10g35111 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g35111

Paralog	Evidence	Comments
Glyma20g32446	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g35111 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g207200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g35111

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g35111

Limit To All Plant Sequences

>Glyma10g35111.2   sequence type=transcript   gene model=Glyma10g35111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAACTGGTGGCAAGTCGCCACAGACACATACACACGTCCACAAGCAGAAAATGAAAACGTTGAGAGCTGAGAAAATGACATGTTTTTGTGAATGCTTGTAATGACTCAGACCCACGTTTTCAAAATCGTACCTTGAAATTCTCTGCTTCTGTTTCACTTGCAATTAATCTCTTTGCTCAGCCACCACCCACCACCCACCACCAACCGTGACTCAAAGCACCATAAGGCAACAATGATTGATGACCATCAGTTCTTTTTGAATCCCGTGACATTCAAGTGGCTATAATCATAAGGAAGCTTGGAGGTACTTCTAGTCTTTAGAAGGAAACAGGCATTAATATTTATTGTATAATTATTGCGGGGATTGGTCATTTAATTTGGATATGATGGAGTTCTGTGCTGAAAGTTCCCATTCGAATGGGAAACACACTTTGAAGCATTCTAAATCTGCAGATGAAGTGAAGAGATCCAGAGAAAAGGCCCATAGAAGTTCTCATTCCAATGGAAAGCAAAATGTGAAGCAAACTTCTACTTTTGTTAATCATGCTGCAATTGCTTGGCATGAGGATAGAACAAAATGGGTTGGTGATAAGTCTCAACATCCACCAAGAACAGCTAAGGATCCAATTATTAGCTGGTCAACATCATATGAAGAGCTGCTGTCAACTAACGAACCTTTTGCTGAGCCAATACCCTTACCAGAGATGGTAGATTTCTTAGTCGATATTTGGCTTGAAGATGAAGGCTTCTTTGACTAAATTGTTGAAAGTTTTAGTTAAATGGCAACTGAAACAAGAAATTTTTAAAGCCTTTGTAGGTGTCCACATATTGATCAGGATGGTGAAGGGAGACAATCGATGGTCTCCACATTAACCTCCTAGCATGAAATCCTTTTATATGTAGAAGTAATCTTCAGGGTTAATGGTTATTATTTTCCACCATTTATCTAATAGAAAATTTCATTGTTTTATATACATGTATGTAGTTTATTTGTATCTGCTGATCCATCAGCAAACATACAAGTTCATATGCATGTCCTAAATAGATGCTTTGATCAATGCCACTTATACATTCATAATTGAAAAGTTAATAATTAACTTTGGCGTGAGA

>Glyma10g35111.3   sequence type=transcript   gene model=Glyma10g35111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCATTTGTACTTACCTTGTTGAATTTTCCTTTTGCCAGTTTATTAACTAGTGTTGCACAACAAACACAAATTGCACTTTGCCAATATTTTTCTTTTTGAAGCTGTTTCCTAATTATGCAGCAACAATGATTGATGACCATCAGTTCTTTTTGAATCCCGTGACATTCAAGTGGCTATAATCATAAGGAAGCTTGGAGGTACTTCTAGTCTTTAGAAGGAAACAGGCATTAATATTTATTGTATAATTATTGCGGGGATTGGTCATTTAATTTGGATATGATGGAGTTCTGTGCTGAAAGTTCCCATTCGAATGGGAAACACACTTTGAAGCATTCTAAATCTGCAGATGAAGTGAAGAGATCCAGAGAAAAGGCCCATAGAAGTTCTCATTCCAATGGAAAGCAAAATGTGAAGCAAACTTCTACTTTTGTTAATCATGCTGCAATTGCTTGGCATGAGGATAGAACAAAATGGGTTGGTGATAAGTCTCAACATCCACCAAGAACAGCTAAGGATCCAATTATTAGCTGGTCAACATCATATGAAGAGCTGCTGTCAACTAACGAACCTTTTGCTGAGCCAATACCCTTACCAGAGATGGTAGATTTCTTAGTCGATATTTGGCTTGAAGATGAAGGCTTCTTTGACTAAATTGTTGAAAGTTTTAGTTAAATGGCAACTGAAACAAGAAATTTTTAAAGCCTTTGTAGGTGTCCACATATTGATCAGGATGGTGAAGGGAGACAATCGATGGTCTCCACATTAACCTCCTAGCATGAAATCCTTTTATATGTAGAAGTAATCTTCAGGGTTAATGGTTATTATTTTCCACCATTTATCTAATAGAAAATTTCATTGTTTTATATACATGTATGTAGTTTATTTGTATCTGCTGATCCATCAGCAAACATACAAGTTCATATGCATGTCCTAAATAGATGCTTTGATCAATGCCACTTATACATTCATAATTGAAAAGTTAATAATTAACTTTGGCGTGAGA

Coding sequences of Glyma10g35111

Limit To All Plant Sequences

>Glyma10g35111.1   sequence type=CDS   gene model=Glyma10g35111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTTCTGTGCTGAAAGTTCCCATTCGAATGGGAAACACACTTTGAAGCATTCTAAATCTGCAGATGAAGTGAAGAGATCCAGAGAAAAGGCCCATAGAAGTTCTCATTCCAATGGAAAGCAAAATGTGAAGCAAACTTCTACTTTTGTTAATCATGCTGCAATTGCTTGGCATGAGGATAGAACAAAATGGGTTGGTGATAAGTCTCAACATCCACCAAGAACAGCTAAGGATCCAATTATTAGCTGGTCAACATCATATGAAGAGCTGCTGTCAACTAACGAACCTTTTGCTGAGCCAATACCCTTACCAGAGATGGTAGATTTCTTAGTCGATATTTGGCTTGAAGATGAAGGCTTCTTTGACTAA

>Glyma10g35111.2   sequence type=CDS   gene model=Glyma10g35111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTTCTGTGCTGAAAGTTCCCATTCGAATGGGAAACACACTTTGAAGCATTCTAAATCTGCAGATGAAGTGAAGAGATCCAGAGAAAAGGCCCATAGAAGTTCTCATTCCAATGGAAAGCAAAATGTGAAGCAAACTTCTACTTTTGTTAATCATGCTGCAATTGCTTGGCATGAGGATAGAACAAAATGGGTTGGTGATAAGTCTCAACATCCACCAAGAACAGCTAAGGATCCAATTATTAGCTGGTCAACATCATATGAAGAGCTGCTGTCAACTAACGAACCTTTTGCTGAGCCAATACCCTTACCAGAGATGGTAGATTTCTTAGTCGATATTTGGCTTGAAGATGAAGGCTTCTTTGACTAA

>Glyma10g35111.3   sequence type=CDS   gene model=Glyma10g35111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGTTCTGTGCTGAAAGTTCCCATTCGAATGGGAAACACACTTTGAAGCATTCTAAATCTGCAGATGAAGTGAAGAGATCCAGAGAAAAGGCCCATAGAAGTTCTCATTCCAATGGAAAGCAAAATGTGAAGCAAACTTCTACTTTTGTTAATCATGCTGCAATTGCTTGGCATGAGGATAGAACAAAATGGGTTGGTGATAAGTCTCAACATCCACCAAGAACAGCTAAGGATCCAATTATTAGCTGGTCAACATCATATGAAGAGCTGCTGTCAACTAACGAACCTTTTGCTGAGCCAATACCCTTACCAGAGATGGTAGATTTCTTAGTCGATATTTGGCTTGAAGATGAAGGCTTCTTTGACTAA

Predicted protein sequences of Glyma10g35111

Limit To All Plant Sequences

>Glyma10g35111.1   sequence type=predicted peptide   gene model=Glyma10g35111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEFCAESSHSNGKHTLKHSKSADEVKRSREKAHRSSHSNGKQNVKQTSTFVNHAAIAWHEDRTKWVGDKSQHPPRTAKDPIISWSTSYEELLSTNEPFAEPIPLPEMVDFLVDIWLEDEGFFD*

>Glyma10g35111.2   sequence type=predicted peptide   gene model=Glyma10g35111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEFCAESSHSNGKHTLKHSKSADEVKRSREKAHRSSHSNGKQNVKQTSTFVNHAAIAWHEDRTKWVGDKSQHPPRTAKDPIISWSTSYEELLSTNEPFAEPIPLPEMVDFLVDIWLEDEGFFD*

>Glyma10g35111.3   sequence type=predicted peptide   gene model=Glyma10g35111   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEFCAESSHSNGKHTLKHSKSADEVKRSREKAHRSSHSNGKQNVKQTSTFVNHAAIAWHEDRTKWVGDKSQHPPRTAKDPIISWSTSYEELLSTNEPFAEPIPLPEMVDFLVDIWLEDEGFFD*

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