Glyma10g35010 - SoyBase

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Report for Sequence Feature Glyma10g35010

Feature Type:	gene_model
Chromosome:	Gm10
Start:	43170281
stop:	43171820
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g35010

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04560	AT	Annotation by Michelle Graham. TAIR10: AWPM-19-like family protein \| chr1:1245070-1245888 FORWARD LENGTH=186	SoyBase	E_val: 1.00E-89	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05512	PFAM	AWPM-19-like family	JGI		ISS
UniRef100_Q39872	UniRef	Annotation by Michelle Graham. Best UniRef hit: PGmPM3 n=1 Tax=Glycine max RepID=Q39872_SOYBN	SoyBase	E_val: 5.00E-127	ISS
UniRef100_Q39872	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PGmPM3 n=1 Tax=Glycine max RepID=Q39872_SOYBN	SoyBase	E_val: 5.00E-127	ISS

Expression Patterns of Glyma10g35010

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g35010

Paralog	Evidence	Comments
Glyma20g32550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g35010 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g205900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g35010

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g35010

Limit To All Plant Sequences

>Glyma10g35010.2   sequence type=transcript   gene model=Glyma10g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGCAACGAAGCACGACGTGAGAGAGATTGTGAAGTAGAAATCGGTGCAAGAAATTCTCCACTTTATCTAAAAAAATTCGGTGAGTTTGTGAAGACAAAAAATCACTAGCTACTCAAAAATGGCCACAGTAGGAAGGAACGTTGCAGCTCCTTTGCTGTTTCTTAACTTGATCATGTATTTTATTGTTCTTGGCTTTGCTAGTTGGTGCCTCAACAGGTTCATCAATGGCCAAACTTACCACCCTAGTAAGCTTATACACTTCATCTATCCATTTCCATACCATTTCCCCTTCACTATTTTGTCATTTTATATATTATCATTTGATTGATTGGTTCATCATTCACGTTACAAAACGTTACTTTTTCTAACTTCCCCCATCATCTATTGGAGACTACAACAACATTCATTAATGATTCACAGAGTGGACAGTAAAGTGTCTAAGCTAAGATAATTAACAATGGTCTTATAATTATTTGAATTTATGAACTGGTAGCAGTTAGTTAATTAATGACAAAAAATAGCATCTTGTCGTTACATTCCGAATTGAAAAAAGTGTTAAATTAAAATGACCCCTTGTTTTTTATTTTCCTTTCAGGTTTTGGTGGAAATGGTGCAACCATGTTTTTCTTAACCTTCTCCATACTAGCAGCTGTTCTGGGCATCGTGTCCAAACTTTTGGGTGGGAATCACATGAGGACATGGAGGAGTGACAGTTTAGCATCTGCAGGAGCCACATCAATGGTTGCTTGGGCAGTCACAGCTCTAGCATTTGGGTTGGCTTGCAAGCAAATACACTTAGGAGGGCATAGAGGGTGGAGGCTGAGGGTAGTGGAGGCATTCATAATAATACTAACATTCACACAGTTGTTGTACCTGATACTGATCCACGCGGGGCTATATAGCAGCAGATATGGTCCCGGGTACCATGACACTGACTATGGTCATGGACATGGTGTGGGAGGGACTACAGGAGATCCAATGCACAAGCCTGCTACTGCAGGAACTCGTGTCTAAGTGCCACTGCACTGCACCACCTTTGTTAATTTCTTCTCTTCAATCATGTTCTACTTTACCTTTTGTTGGAACTTTCTTTTTTTCATTGTCTTTGGTTTAGATCACTTGGATTGTGTAATGTCTTTGTTGGCTTGTTGTTTTCTTACACATGATAGTCACTTTGTAGCATGACATTGTGTGGTGTATATGAATGGCTGTAATTGATTTTGTATCAGCCCTCTATCATGTGTATCTATGTTTGTGGTTCCACATCTCAGACATGAATTTTTCATGCTTACTGAGAAGTTAATAAATTTCTTAGACGTAACCTTTTACTTCTCAACGGATTTAACTCATCGT

Coding sequences of Glyma10g35010

Limit To All Plant Sequences

>Glyma10g35010.1   sequence type=CDS   gene model=Glyma10g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACAGTAGGAAGGAACGTTGCAGCTCCTTTGCTGTTTCTTAACTTGATCATGTATTTTATTGTTCTTGGCTTTGCTAGTTGGTGCCTCAACAGGTTCATCAATGGCCAAACTTACCACCCTAGTTTTGGTGGAAATGGTGCAACCATGTTTTTCTTAACCTTCTCCATACTAGCAGCTGTTCTGGGCATCGTGTCCAAACTTTTGGGTGGGAATCACATGAGGACATGGAGGAGTGACAGTTTAGCATCTGCAGGAGCCACATCAATGGTTGCTTGGGCAGTCACAGCTCTAGCATTTGGGTTGGCTTGCAAGCAAATACACTTAGGAGGGCATAGAGGGTGGAGGCTGAGGGTAGTGGAGGCATTCATAATAATACTAACATTCACACAGTTGTTGTACCTGATACTGATCCACGCGGGGCTATATAGCAGCAGATATGGTCCCGGGTACCATGACACTGACTATGGTCATGGACATGGTGTGGGAGGGACTACAGGAGATCCAATGCACAAGCCTGCTACTGCAGGAACTCGTGTCTAA

>Glyma10g35010.2   sequence type=CDS   gene model=Glyma10g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTTTTCTTAACCTTCTCCATACTAGCAGCTGTTCTGGGCATCGTGTCCAAACTTTTGGGTGGGAATCACATGAGGACATGGAGGAGTGACAGTTTAGCATCTGCAGGAGCCACATCAATGGTTGCTTGGGCAGTCACAGCTCTAGCATTTGGGTTGGCTTGCAAGCAAATACACTTAGGAGGGCATAGAGGGTGGAGGCTGAGGGTAGTGGAGGCATTCATAATAATACTAACATTCACACAGTTGTTGTACCTGATACTGATCCACGCGGGGCTATATAGCAGCAGATATGGTCCCGGGTACCATGACACTGACTATGGTCATGGACATGGTGTGGGAGGGACTACAGGAGATCCAATGCACAAGCCTGCTACTGCAGGAACTCGTGTCTAA

Predicted protein sequences of Glyma10g35010

Limit To All Plant Sequences

>Glyma10g35010.1   sequence type=predicted peptide   gene model=Glyma10g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATVGRNVAAPLLFLNLIMYFIVLGFASWCLNRFINGQTYHPSFGGNGATMFFLTFSILAAVLGIVSKLLGGNHMRTWRSDSLASAGATSMVAWAVTALAFGLACKQIHLGGHRGWRLRVVEAFIIILTFTQLLYLILIHAGLYSSRYGPGYHDTDYGHGHGVGGTTGDPMHKPATAGTRV*

>Glyma10g35010.2   sequence type=predicted peptide   gene model=Glyma10g35010   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MFFLTFSILAAVLGIVSKLLGGNHMRTWRSDSLASAGATSMVAWAVTALAFGLACKQIHLGGHRGWRLRVVEAFIIILTFTQLLYLILIHAGLYSSRYGPGYHDTDYGHGHGVGGTTGDPMHKPATAGTRV*

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