Glyma10g34970 - SoyBase

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Report for Sequence Feature Glyma10g34970

Feature Type:	gene_model
Chromosome:	Gm10
Start:	43123175
stop:	43132364
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g34970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G68750	AT	Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxylase 4 \| chr1:25822942-25828104 REVERSE LENGTH=1032	SoyBase	E_val: 0	ISS
GO:0006099	GO-bp	Annotation by Michelle Graham. GO Biological Process: tricarboxylic acid cycle	SoyBase	N/A	ISS
GO:0015977	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbon fixation	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008964	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxylase activity	SoyBase	N/A	ISS
PF00311	PFAM	Phosphoenolpyruvate carboxylase	JGI		ISS
UniRef100_Q6Q2Z9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxylase n=1 Tax=Glycine max RepID=Q6Q2Z9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q6Q2Z9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Phosphoenolpyruvate carboxylase n=1 Tax=Glycine max RepID=Q6Q2Z9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g34970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma10g34970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g205500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g34970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g34970

Limit To All Plant Sequences

>Glyma10g34970.1   sequence type=CDS   gene model=Glyma10g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACTGACATCACTGATGATATTGCTGAGGAAATCTCCTTCCAGAGCTTCGATGATGACTGCAGGTTGCTTGGTAATCTCCTCAATGACATTCTCCAGCGTGAAGTTGGCACCAACTTGCTTGACAAGATCGAAAGGACTCGAGTCCTTGCTCAGAGTGGTTGTAATATGAGGCAGGCGGGTATTGTAAACATGGCAGAGATGCTTGAGAAGCAGTTGGCTTCGGAGTTATCAAAGATGACACTAGAAGAAGCTTTCACCCTTGCTCGTGCCTTCAGCCATTATCTTACTTTGATGGGTATAGCTGAGACCCACCATAGGGTTCGTAAAGGAGGGAATATGGCACAAATTGCAAAATCTTGCGATGATATATTTAACCAGCTGGTGCAGGGTGGAGTCCCCCCAGAAGAACTTTATGACACAGTCTGCAAGCAGGAGGTTGAAATTGTTCTCACTGCTCATCCCACACAGATTAACCGTCGAACCTTACAGTTTAAACACATTAGAATTGCTCATCTTTTGGATTACAATGATCGACCTGATCTTAGCACTGAAGATCGAGAAATGGTGATTGAAGATCTGGTGAGAGAGATAACTTCAATATGGCAGACAGATGAGCTTAGGCGCCAGAAACCCACTCCAGTTGATGAAGCTAGAGCTGGTTTCAATATTGTGGAGCAGTCACTCTGGAAAGCTGTCCCTCATTATTTACGTCGTGTCAGCAATGCATTAAAGAAGCATACAGGAAAGCCACTTCCTTTGACTTGCACTCCCATAAAGTTTGGATCTTGGATGGGAGGTGATAGAGATGGAAACCCAAATGTGACAGCAAAGGTCACAAAAGATGTTTCACTTCTATCTAGATGGATGGCGATTGACCTCTATATTCGGGAAGTGGATAGCCTCAGATTTGAGCTATCCATGAACCAGTGCAGTGATAGGTTGTCAAGATTGGCACATGAAATTCTAGAAGCTAAGCATGAGAATCGCCGTGAGAATTGGAATCAGTCTGCGAATAGAAGTCTCACACTTCCAACACAACTTCCAGCTAGAGCTCATTTACCTTCTATTGCTGAAAATGGTGAATCTCGGCATCCCAGACTAGACATTCCAGCACCTGATTACATGCAATCCAATCACAAGGATGGTGGGGTTTCTGTAAGTTCAACTACATCAAAACTTGCCAATCCCAATACTCGATTACCAGGAACAAGTTCAGCAAATTCCAGTGCTTCTTCAGCTGCACTTGGTCAAAAGAAATTGTATGCAGAATCCCAGACAGGAAAGTCCACTTTTCAAAAGCTTTTGGAGCCAATGCTTCCTCAACTTCCTGGAATTGCTCCTTATAGAATTGTCCTGGGGAATGTTAAGGATAAGCTTGAGAAAAGTCGTAGACGGTTAGAAATTCTTCTTGAGGATGTTGCATGTGACTATGATCCTTTGGATTACTATGAAACATCTGATCAGCTTTTGGAACCTCTGCTCCTCTGTTATGAATCTCTGCAATCGTGTGGATCTGGGGTGCTAGCTGATGGTCGACTTGCTGATCTGATTCGTAGAGTTGCTACCTTTGGAATGGTGTTAATGAAGCTTGACTTGCGTCAGGAATCTGGGAGACATGCAGAAGCACTTGATGCAATAACACAGTACTTAGATATGGGTACTTACAGTGAATGGGATGAAGAAAAGAAGTTGGACTTCTTAACAAGAGAACTTAAAGGGAAGAGGCCTCTTGTTCCTGTTAGTATAGAGGTTCATCCTGATGTTAAAGAAGTCTTGGATACATTCCGAATTGCCGCTGAACTGGGGAGTGATTCACTTGGAGCTTATGTGATCTCTATGGCCTCAAATGCAAGTGATGTCCTTGCAGTAGAGCTTTTACAGAAGGATGCACGGCTTGCTGCTATTGGGGAGTTGGGAAAAGCATGTCCTGGTGGAACGTTGCGGGTTGTCCCTCTGTTTGAAACTGTGAAAGACCTGAGAGGAGCTGGTTCAGTTATCCGGAAACTTTTATCAATAGACTGGTACCATGAACACATCATTAAGAACCATAATGGACATCAAGAGGTTATGGTTGGATATTCTGATTCTGGTAAAGATGCTGGTCGCTTTACTGCTGCTTGGGAACTTTACAAAGCTCAGGAGGATGTTGTAGCTGCTTGCAATGATTATGGAATAAAGGTTACTCTATTCCATGGTCGTGGAGGCAGTATTGGTCGTGGTGGTGGCCCAACATATCTGGCTATTCAGTCCCAACCCCCTGGCTCTGTGATGGGAACGCTTCGGTCTACTGAGCAGGGAGAGATGGTAGAGGCTAAGTTTGGGTTGCCACAGATAGCTGTTAGACAACTTGAGATATACACAACAGCTGTACTACTTGCAACCCTTCGTCCACCTATCCCACCCCGAGAAGAAAAATGGCGTAATGTCATGGAAGAGATCTCAAACATCAGTTGTCAGTGTTACCGCAATGTAGTGTATGAAAATCCAGAATTCCTGGCCTACTTCCATGAAGCCACACCAGAGGCAGAACTTGGCTTCCTTAACATAGGTAGCCGCCCTACAAGAAGGAAGAGCTCAGTAGGAATCGGACACCTTCGTGCAATTCCCTGGTTATTTGCATGGACACAAACAAGATTCGTTCTTCCAGCTTGGCTTGGAGTCGGAGCAGGTTTAAAAGGAGCTTGCGAGAAAGGTTACACCGAAGAGCTAAAAGCCATGTACAAAGAATGGCCCTTCTTTCAAAGTACCATAGATCTTATTGAGATGGTTTTGGGGAAAGCTGACATTCCTATAGCCAAGCACTATGATGAAGTCCTTGTGTCAAAGGAGAGGCAAGAGCTTGGCCATGAACTAAGAAGTGAGCTCATGACAGCTGAAAAGTTTGTCATGGTTATTAGTGGGCACGAGAAACTTCAGCAGAATAATAGGAGCTTGAGGAGGCTAATTGAGAATAGACTTCCCTTCCTTAATCCCTTGAACATGTTGCAGGTGGAGATACTCAAGAGGTTAAGACGTGATGATGACAACCGTAAGATCAGAGATGCTTTGCTTATCACCATAAATGGGATTGCTGCAGGGATGAAGAATACAGGTTGA

Predicted protein sequences of Glyma10g34970

Limit To All Plant Sequences

>Glyma10g34970.1   sequence type=predicted peptide   gene model=Glyma10g34970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTDITDDIAEEISFQSFDDDCRLLGNLLNDILQREVGTNLLDKIERTRVLAQSGCNMRQAGIVNMAEMLEKQLASELSKMTLEEAFTLARAFSHYLTLMGIAETHHRVRKGGNMAQIAKSCDDIFNQLVQGGVPPEELYDTVCKQEVEIVLTAHPTQINRRTLQFKHIRIAHLLDYNDRPDLSTEDREMVIEDLVREITSIWQTDELRRQKPTPVDEARAGFNIVEQSLWKAVPHYLRRVSNALKKHTGKPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYIREVDSLRFELSMNQCSDRLSRLAHEILEAKHENRRENWNQSANRSLTLPTQLPARAHLPSIAENGESRHPRLDIPAPDYMQSNHKDGGVSVSSTTSKLANPNTRLPGTSSANSSASSAALGQKKLYAESQTGKSTFQKLLEPMLPQLPGIAPYRIVLGNVKDKLEKSRRRLEILLEDVACDYDPLDYYETSDQLLEPLLLCYESLQSCGSGVLADGRLADLIRRVATFGMVLMKLDLRQESGRHAEALDAITQYLDMGTYSEWDEEKKLDFLTRELKGKRPLVPVSIEVHPDVKEVLDTFRIAAELGSDSLGAYVISMASNASDVLAVELLQKDARLAAIGELGKACPGGTLRVVPLFETVKDLRGAGSVIRKLLSIDWYHEHIIKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNDYGIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVEAKFGLPQIAVRQLEIYTTAVLLATLRPPIPPREEKWRNVMEEISNISCQCYRNVVYENPEFLAYFHEATPEAELGFLNIGSRPTRRKSSVGIGHLRAIPWLFAWTQTRFVLPAWLGVGAGLKGACEKGYTEELKAMYKEWPFFQSTIDLIEMVLGKADIPIAKHYDEVLVSKERQELGHELRSELMTAEKFVMVISGHEKLQQNNRSLRRLIENRLPFLNPLNMLQVEILKRLRRDDDNRKIRDALLITINGIAAGMKNTG*

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