SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G16980 | AT | Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr2:7376376-7380944 FORWARD LENGTH=461 | SoyBase | E_val: 1.00E-74 | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005215 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transporter activity | SoyBase | N/A | ISS |
| GO:0008493 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: tetracycline transporter activity | SoyBase | N/A | ISS |
| KOG2816 | KOG | Predicted transporter ADD1 (major facilitator superfamily) | JGI | ISS | |
| PTHR24003 | Panther | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR | JGI | ISS | |
| PTHR24003:SF15 | Panther | JGI | ISS | ||
| PF07690 | PFAM | Major Facilitator Superfamily | JGI | ISS | |
| UniRef100_G7I365 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Hippocampus abundant transcript-like protein n=1 Tax=Medicago truncatula RepID=G7I365_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1LCT5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LCT5_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma10g34820 not represented in the dataset |
Glyma10g34820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma20g32811 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.10g203700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma10g34820.1 sequence type=CDS gene model=Glyma10g34820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTGCAAAGGTGCACAACAAACATGTCATGGTTGAGTGGCCTCAGAGAACTGAGGCCTTTGCTTCACTTGCTGCTGCCACTTAGCATCCATTGGGTAGCTGAGGAGATGACAGTTTCTGTTCTTGTTGATGTCACAACCTCTGCTTTGTGCCCTGGAGAGTCAACTTGCTCAAAAGCTATTTACATCAATGGGGTCCAACAAACGATTGTTGGAATTTTCAAGATGGTGGTACTTCCACTACTGGGTCAGCTCTCAGATGAGTATGGCCGTAAACCCTTGCTCCTGATTACCATATCCACGGCTATATTTCCCTTTGTTTTACTTGTCTGGCATCAGTCTGAGGAATATGTCTATGCCTACTATGTGCTTCGCACAATTTCAAATATAATCAGTCAAGGGAGTATTTTCTGCATTTCTGTTGCATATGCAGCAGATGTTGTCAATGAAAGCAAAAGGGCAGCAGTATTTGGTTGGATTACTGGTCTCCTTTCTGCTTCACATGTTCTGGGGGATGTACTGGCTTGGTCTCTTCCTGAAAAGTACATTTTTGCGGTTTCAATAGTACTATTGACTTCTTGTCCTGTTTATATGAAATTCTTCCTTGTTGAAACGGTGATACCGGCTCCGAAAAATGATCGTGAGTCAGGTTGCTGGGCTAAAATTGTTGATGTTCCCCGACAAAGATATATATCTATGAGGAGAGCTGCGGAAATAGTAATTTTCAGTCCCACTTTGAGGGGCATGGCTCTTGTGTCCTTCTTTTATGAGCTGGGAATGTCAGGCATAAGCAGTGTTTTGCTGTACTATTTGAAAGCTGTTTTTGGTTTTAACAAAAATCAGTTCTCAGAACTTCTGATGATGGTGGGAATTGGTTCAATCTTTTCTCAGATGTTGTTGCTTCCAATACTCAATCCATTGGTTGGAGAGAAAGTTATACTCTGCTCTGCCTTGCTTGCATCAATAGCATATGCTTGGCTCTATGGATTAGCATGGGCACCTTGGGTACCATACTTAAGTGCCTCTTTTGGTATCATCTATGTCCTTGTGAAACCTGCCACTTATGCTATTATTTCAAATGCGTCAAGCTCAACCAATCAGGGAAAAGCACAAACATTTATTGCTGGGACACAATCTATATCTGATTTGCTATCTCCTATTGCTATGAGTCCATTGACTTCATGGTTTTTATCTAGCAATGCTCCTTTTGAATGCAAAGGTTTTAGCATTATATGTGCATCCATATGCATGATAATTTCTCTTTGTTTTGCTTGCTTGCTGAAGCCAGCTGATACTAGTTCGAGTAATGACATAGAGGGAAGCCAAGAGACCCCGCTTCTGACTGATAATTGA
>Glyma10g34820.1 sequence type=predicted peptide gene model=Glyma10g34820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLQRCTTNMSWLSGLRELRPLLHLLLPLSIHWVAEEMTVSVLVDVTTSALCPGESTCSKAIYINGVQQTIVGIFKMVVLPLLGQLSDEYGRKPLLLITISTAIFPFVLLVWHQSEEYVYAYYVLRTISNIISQGSIFCISVAYAADVVNESKRAAVFGWITGLLSASHVLGDVLAWSLPEKYIFAVSIVLLTSCPVYMKFFLVETVIPAPKNDRESGCWAKIVDVPRQRYISMRRAAEIVIFSPTLRGMALVSFFYELGMSGISSVLLYYLKAVFGFNKNQFSELLMMVGIGSIFSQMLLLPILNPLVGEKVILCSALLASIAYAWLYGLAWAPWVPYLSASFGIIYVLVKPATYAIISNASSSTNQGKAQTFIAGTQSISDLLSPIAMSPLTSWFLSSNAPFECKGFSIICASICMIISLCFACLLKPADTSSSNDIEGSQETPLLTDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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