Glyma10g34380 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: Undefined variable $sxsome in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $sstart in /var/www/html/include/SeqFeatClass.php on line 665

Warning: Undefined variable $send in /var/www/html/include/SeqFeatClass.php on line 665

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma10g34380): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma10g34380): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma10g34380

Feature Type:	gene_model
Chromosome:	Gm10
Start:	42530853
stop:	42537087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g34380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52190	AT	Annotation by Michelle Graham. TAIR10: phosphate transporter traffic facilitator1 \| chr3:19354117-19356910 REVERSE LENGTH=398	SoyBase	E_val: 0	ISS
GO:0006612	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane	SoyBase	N/A	ISS
GO:0006817	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphate ion transport	SoyBase	N/A	ISS
GO:0006820	GO-bp	Annotation by Michelle Graham. GO Biological Process: anion transport	SoyBase	N/A	ISS
GO:0006862	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide transport	SoyBase	N/A	ISS
GO:0006865	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0010363	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response	SoyBase	N/A	ISS
GO:0015696	GO-bp	Annotation by Michelle Graham. GO Biological Process: ammonium transport	SoyBase	N/A	ISS
GO:0015802	GO-bp	Annotation by Michelle Graham. GO Biological Process: basic amino acid transport	SoyBase	N/A	ISS
GO:0016036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular response to phosphate starvation	SoyBase	N/A	ISS
GO:0043069	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0043269	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of ion transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
KOG0771	KOG	Prolactin regulatory element-binding protein/Protein transport protein SEC12p	JGI		ISS
PTHR23284	Panther	SEC12P-LIKE	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_I1LCP4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LCP4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8GYE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SEC12-like protein 1 n=2 Tax=Arabidopsis thaliana RepID=PHF1_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g34380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g34380 not represented in the dataset	Glyma10g34380 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g34380

Paralog	Evidence	Comments
Glyma20g33180	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g34380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g200200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g34380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma10g34380

Limit To All Plant Sequences

>Glyma10g34380.1   sequence type=CDS   gene model=Glyma10g34380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTCTCATTTTCGTCTCTGACATTTCTATTTAAAATTTGCCGAAGAATCCAATTCAGCGATCTCCGAAGAGCTCCATTTGTTGCACTCCAATTGGAAAAAAGAAGTGAACTTGCGATCTGGGTATCCAATTTTCGAACTCTTTCGATGGGGAATGATGCAGGGTCACCGCAGGGTCCGGTTACGTGTGGGTCGTGGATTCGGAGGCCCGAGAATTTGAATTTGGTGGTGTTGGGAAGGTCCAGACGTGGCAGTTCTTGTCCTTCTCTCTTAGAGATTTTCTCCTTCGATCCCAAAACCACTTCTTTGTCTACCTCTCCTCTGACCACTTATGTGTTGGAAGCAGAGGAAGGTGATCCTGTTGCCATTACAGTTCACCCAAGTGGGGATGATTTTGTGTGCGCTCTCAGCAATGGTAGCTGCAAATTGTTTGAGCTGTATGGTCGTGAAACAAACATGAAGTTGTTGGCTAAGGAACTGGCTCCTCTACAGGGTATTGGTCCTCAGAAATGTATTTCTTTTAGTGTTGATGGGTCTAAATTTGCTGCTGGCGGAATGGATGGACATCTCAGAATCATGGAGTGGCCTAGTATGCGTGTGATTTTGGATGAACCTAGAGCACACAATTCAGTTCAGGATATGGATTTTAGTCTAGATTCAGAATTTCTAGCTTCAACTTCTACTGATGGTTCAGCAAGAATCTGGAAGACTGAAGATGGTGTTCCTTTGAATACTTTGTCTCGCAACTCGGATGAAAAGATTGAATTATGTCGATTTTCCAAGGACGGAACCAAACCATTTTTATTTTGCTCTGTTCAAAAAGGTGATACTTCTGTCACTGCGGTTTATGATATTAGCACATGGAATAAAATTGGGCATAAGAGGCTGATTAGAAAGTCTGCTTCAGTAATGTCAATTAGCAATGATGGGAAATACCTTTCTCTGGGCAGTAAAGATGGAGACATATGTGTAGTTGAAGTAAAGAAAATGCAGATATACCATTATAGCAAGAGACTGCACCTGGGTACAAATATTGCATCGCTTGAGTTCTGTCCCGGGGAAAGGGTTGTACTTACAACCTCAGTAGAATGGGGAGCGCTGGTCACTAAGCTGACTGTACCTAAAGATTGGAAAGAATGGCAGATCTATTTGGTGCTATTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATATTCTTTGAGAACTCTGATTCATTCTGGAACTTTCCCATGGGCAAAGACCAACCAGCAAGACCAAGGTTTAAACCTGTGTTAAAAGATCCCCAGTCTTATGATGATCAAAATATTTGGGGGCCAGTAGATATGTGA

Predicted protein sequences of Glyma10g34380

Limit To All Plant Sequences

>Glyma10g34380.1   sequence type=predicted peptide   gene model=Glyma10g34380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSFSSLTFLFKICRRIQFSDLRRAPFVALQLEKRSELAIWVSNFRTLSMGNDAGSPQGPVTCGSWIRRPENLNLVVLGRSRRGSSCPSLLEIFSFDPKTTSLSTSPLTTYVLEAEEGDPVAITVHPSGDDFVCALSNGSCKLFELYGRETNMKLLAKELAPLQGIGPQKCISFSVDGSKFAAGGMDGHLRIMEWPSMRVILDEPRAHNSVQDMDFSLDSEFLASTSTDGSARIWKTEDGVPLNTLSRNSDEKIELCRFSKDGTKPFLFCSVQKGDTSVTAVYDISTWNKIGHKRLIRKSASVMSISNDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIASLEFCPGERVVLTTSVEWGALVTKLTVPKDWKEWQIYLVLLGLFLASAVAFYIFFENSDSFWNFPMGKDQPARPRFKPVLKDPQSYDDQNIWGPVDM*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain