Glyma10g34370 - SoyBase

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Report for Sequence Feature Glyma10g34370

Feature Type:	gene_model
Chromosome:	Gm10
Start:	42522158
stop:	42530147
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma10g34370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52180	AT	Annotation by Michelle Graham. TAIR10: dual specificity protein phosphatase (DsPTP1) family protein \| chr3:19349884-19353459 REVERSE LENGTH=379	SoyBase	E_val: 1.00E-170	ISS
GO:0000023	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose metabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0005983	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch catabolic process	SoyBase	N/A	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0016311	GO-bp	Annotation by Michelle Graham. GO Biological Process: dephosphorylation	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019761	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process	SoyBase	N/A	ISS
GO:0043085	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008138	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein tyrosine/serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
GO:0019203	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate phosphatase activity	SoyBase	N/A	ISS
GO:0030247	GO-mf	Annotation by Michelle Graham. GO Molecular Function: polysaccharide binding	SoyBase	N/A	ISS
PTHR10343	Panther	5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT	JGI		ISS
PTHR10343:SF15	Panther	ATPTPKIS1/DSP4/SEX4 (STARCH-EXCESS 4), POLYSACCHAR	JGI		ISS
PF00782	PFAM	Dual specificity phosphatase, catalytic domain	JGI		ISS
UniRef100_G4LTX4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dual protein phosphatase 4 n=1 Tax=Castanea sativa RepID=G4LTX4_CASSA	SoyBase	E_val: 0	ISS
UniRef100_I1LCP2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1LCP2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma10g34370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma10g34370 not represented in the dataset	Glyma10g34370 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma10g34370

Paralog	Evidence	Comments
Glyma20g33190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma10g34370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.10g200100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma10g34370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma10g34370

Limit To All Plant Sequences

>Glyma10g34370.2   sequence type=transcript   gene model=Glyma10g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGACGAATGAATTAAAATCATCAAATTTTAAAATCACGAGATTCATCAAACTAAAAGTTCAAAATGATTAATTCTAATTCAGCAAGAAATGAATGCCCTTTTGAGCCAACGGAGGTGAATAGAAATGGACCCACAAATAGAATATGATAATAGCAGCTCAGAAAGAAACGCAAGTTTTGGCATGGGTGTGAGCTCTGGAACTCCACTCGTGATCCAACACGATAGAGAGAGAAAAAGGGTCTTGCCTTTTTTTCTGCTTTTGATTTGACTCTTTACAAATACAAATAAATAATAAAATCCCATCAAGAAGAAATAAATATCAAGCCCAACCCAGTGCAGTGCTGCAGGGACTGTCACTGAACTCAAAAATGAACTGTCTTCGGAATCTTTCTCGGTTTGTTTGTTAATCCTTCTTCCTTTCTCCATTCCATCTCTTTATTTCTATAATCCAAATCGAATCGAATGAGAATCAGATTCCTTCTTTTTCCAGATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAGGAAGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATCTACGGAGGCGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCTGGGTTATAAACTTAACGAGGCTCATACACTACTTCAGAGCAAAAGGTCGTGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACAGCGATGAGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGGCTGATGATCCTGATCTCACAACAGATGAACAACTCAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATTAGTGAACCATCAATTCACGTGGTTGTTGATATGAAAAATACTAGATGCGCGCATACATGTTACCTAATAAGATTAATCTAAACCTTACAATATGTTGGGTTCCTGCGGTTTATTGAGTTCCATAGTAATCAAATGTCTTGGAAATTATTTAAATAGCACCATGACCTTCAAATTTCAATGTACCATGAAATAGAATGTGGCTATAAAATGAGTTTTACATTTATATCCTCATAGATGTGGAAGTAATTGTATAATGTTTTCGGAATATGTGAATTCAACATATTAATGGTTAATGAATGAATAAAGTATTGTTAAAACTTAA

Coding sequences of Glyma10g34370

Limit To All Plant Sequences

>Glyma10g34370.1   sequence type=CDS   gene model=Glyma10g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACTGTCTTCGGAATCTTTCTCGATTCTCTGTTTTGCCCTTCGAAACACCTGTTACGCGCCACCGCAAGAACCTTCCCCTTTCCCTGGGTTTCGTCAACAATTCTCGTCAATATCCAACTATGGCCCTCAAGGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAGGAAGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATCTACGGAGGCGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCTGGGTTATAAACTTAACGAGGCTCATACACTACTTCAGAGCAAAAGGTCGTGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACAGCGATGAGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGGCTGATGATCCTGATCTCACAACAGATGAACAACTCAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATTAG

>Glyma10g34370.2   sequence type=CDS   gene model=Glyma10g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCTCAAGGCTGCCTCAGGTTCTATACCAAGTGCAGACACAAGTAGTGCCGATAAGGAGGAAGAAAAGTCTGAGACATATAGTCATAACATGACAGAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTATAATTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTAGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATTCAGACCTTGAATATTTTGGAGTTGATATTAATGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTGAGATAAGGGACTTTGATGCATTTGATCTACGGAGGCGGCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCCAATGGAGGTGTAACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCTGGGTTATAAACTTAACGAGGCTCATACACTACTTCAGAGCAAAAGGTCGTGCTTTCCAAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTGTCATGGGAAGACAAAAATTGCTCTACCGTGGAAATTTCAGGACTTGATATTGGATGGGGGCAGAGAATACCCCTAAATTTTGATGACAAAGAGGGTTTGTGGTTTCTCAAGAGGGAATTGCCTGAAGGACTCTACGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAACAGCGATGAGCTTATAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAGTCCTTGATGATACAAGCAGTGTTCGTGCCTCTCTTCGGAAGAGATTGACGGCTGATGATCCTGATCTCACAACAGATGAACAACTCAGAATAAAGGAGTTTCTTGAAGCTTGTCCTGATGAGGATTAG

Predicted protein sequences of Glyma10g34370

Limit To All Plant Sequences

>Glyma10g34370.1   sequence type=predicted peptide   gene model=Glyma10g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNCLRNLSRFSVLPFETPVTRHRKNLPLSLGFVNNSRQYPTMALKAASGSIPSADTSSADKEEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDSDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDAFDLRRRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKSVTLSWEDKNCSTVEISGLDIGWGQRIPLNFDDKEGLWFLKRELPEGLYEYKYIVDGEWTCNSDELITSPNKDGHVNNFIQVLDDTSSVRASLRKRLTADDPDLTTDEQLRIKEFLEACPDED*

>Glyma10g34370.2   sequence type=predicted peptide   gene model=Glyma10g34370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALKAASGSIPSADTSSADKEEEKSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDSDLEYFGVDINAIREYAKTCNDIQHLRAEIRDFDAFDLRRRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPAVALAYMFWVLGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGLSKKSVTLSWEDKNCSTVEISGLDIGWGQRIPLNFDDKEGLWFLKRELPEGLYEYKYIVDGEWTCNSDELITSPNKDGHVNNFIQVLDDTSSVRASLRKRLTADDPDLTTDEQLRIKEFLEACPDED*

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